Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3iyq.std.txt Дата изменения: Mon Oct 8 03:51:01 2012 Дата индексирования: Sun Feb 3 22:23:29 2013 Кодировка:

REM -------------------------------------------------------------------- 3IYQ
REM 3IYQ
REM STRIDE: Knowledge-based secondary structure assignment 3IYQ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3IYQ
REM 3IYQ
REM Residue accessible surface area calculation 3IYQ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3IYQ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3IYQ
REM 3IYQ
REM ------------------------ General information ----------------------- 3IYQ
REM 3IYQ
HDR RIBOSOMAL PROTEIN/RNA 16-APR-10 3IYQ 3IYQ
CMP MOL_ID: 1; 3IYQ
CMP MOLECULE: TMRNA; 3IYQ
CMP CHAIN: A; 3IYQ
CMP MOL_ID: 2; 3IYQ
CMP MOLECULE: SSRA-BINDING PROTEIN; 3IYQ
CMP CHAIN: B 3IYQ
SRC MOL_ID: 1; 3IYQ
SRC ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; 3IYQ
SRC ORGANISM_TAXID: 300852; 3IYQ
SRC STRAIN: HB8; 3IYQ
SRC MOL_ID: 2; 3IYQ
SRC ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; 3IYQ
SRC ORGANISM_TAXID: 300852; 3IYQ
SRC STRAIN: HB8 3IYQ
AUT F.WEIS,P.BRON,E.GIUDICE,J.P.ROLLAND,D.THOMAS,B.FELDEN,R.GILLE 3IYQ
REM 3IYQ
REM -------------------- Secondary structure summary ------------------- 3IYQ
REM 3IYQ
CHN /data/npidb/pdb/pdb_new/all/pdb3iyq.pdb B 3IYQ
REM 3IYQ
REM . . . . . 3IYQ
SEQ 1 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDG 50 3IYQ
STR BTTTTTTTT EEEEEE HHHHHHHHH TTTTEEE TT 3IYQ
REM 3IYQ
REM . . . . . 3IYQ
SEQ 51 ELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLV 100 3IYQ
STR TTEEE TTT TTTT TTTT EE B HHHHHTTHHHHHHTTTEEE 3IYQ
REM 3IYQ
REM . . 3IYQ
SEQ 101 PLKIYFNERGYAKVLLGLARGK 122 3IYQ
STR EEEEEETTTT EEEEEEEE 3IYQ
REM 3IYQ
REM 3IYQ
REM 3IYQ
LOC AlphaHelix GLY 28 B ALA 36 B 3IYQ
LOC AlphaHelix LYS 83 B ARG 87 B 3IYQ
LOC AlphaHelix LEU 90 B GLN 95 B 3IYQ
LOC Strand GLU 18 B GLY 23 B 3IYQ
LOC Strand PHE 45 B ARG 47 B 3IYQ
LOC Strand TYR 54 B GLU 56 B 3IYQ
LOC Strand ARG 77 B LYS 78 B 3IYQ
LOC Strand THR 99 B PHE 107 B 3IYQ
LOC Strand ALA 113 B ALA 120 B 3IYQ
LOC TurnIV ASN 7 B ALA 10 B 3IYQ
LOC TurnIV ARG 9 B HIS 12 B 3IYQ
LOC TurnIV ALA 10 B ASP 13 B 3IYQ
LOC TurnIV ARG 11 B TYR 14 B 3IYQ
LOC TurnII PHE 41 B SER 44 B 3IYQ
LOC TurnIV ASP 50 B LEU 53 B 3IYQ
LOC TurnIV SER 67 B ASN 70 B 3IYQ
LOC TurnI ASP 72 B ARG 75 B 3IYQ
LOC TurnIV ARG 87 B LEU 90 B 3IYQ
LOC TurnIV LYS 96 B THR 99 B 3IYQ
LOC TurnIV ASN 108 B GLY 111 B 3IYQ
LOC GammaInv LEU 58 B ILE 60 B 3IYQ
REM 3IYQ
REM --------------- Detailed secondary structure assignment------------- 3IYQ
REM 3IYQ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3IYQ
ASG ALA B 2 1 C Coil 360.00 145.43 62.6 3IYQ
ASG PRO B 3 2 C Coil -75.84 -8.99 91.5 3IYQ
ASG VAL B 4 3 C Coil -80.54 33.77 112.6 3IYQ
ASG LEU B 5 4 C Coil -71.02 114.74 35.5 3IYQ
ASG GLU B 6 5 B Bridge -161.98 147.38 43.3 3IYQ
ASG ASN B 7 6 T Turn -73.27 108.80 5.2 3IYQ
ASG ARG B 8 7 T Turn -90.59 9.09 158.0 3IYQ
ASG ARG B 9 8 T Turn -62.83 -32.99 51.4 3IYQ
ASG ALA B 10 9 T Turn -65.49 34.13 18.4 3IYQ
ASG ARG B 11 10 T Turn -161.33 6.32 158.6 3IYQ
ASG HIS B 12 11 T Turn -152.78 15.72 181.2 3IYQ
ASG ASP B 13 12 T Turn -153.54 -69.95 94.7 3IYQ
ASG TYR B 14 13 T Turn -120.74 135.25 6.1 3IYQ
ASG GLU B 15 14 C Coil -84.79 159.27 86.6 3IYQ
ASG ILE B 16 15 C Coil -122.23 125.47 27.2 3IYQ
ASG LEU B 17 16 C Coil -104.66 -23.81 125.1 3IYQ
ASG GLU B 18 17 E Strand -150.34 157.75 81.4 3IYQ
ASG THR B 19 18 E Strand -142.68 139.19 95.8 3IYQ
ASG TYR B 20 19 E Strand -132.68 169.19 26.5 3IYQ
ASG GLU B 21 20 E Strand -121.08 142.24 58.8 3IYQ
ASG ALA B 22 21 E Strand -156.56 167.61 0.8 3IYQ
ASG GLY B 23 22 E Strand -108.33 170.59 17.0 3IYQ
ASG ILE B 24 23 C Coil -148.94 137.33 10.4 3IYQ
ASG ALA B 25 24 C Coil -66.31 99.98 69.1 3IYQ
ASG LEU B 26 25 C Coil -83.14 -141.32 20.0 3IYQ
ASG LYS B 27 26 C Coil -163.45 163.75 156.1 3IYQ
ASG GLY B 28 27 H AlphaHelix -63.23 -35.76 49.4 3IYQ
ASG THR B 29 28 H AlphaHelix -58.17 -36.57 15.3 3IYQ
ASG GLU B 30 29 H AlphaHelix -62.80 -43.67 0.0 3IYQ
ASG VAL B 31 30 H AlphaHelix -63.32 -45.28 39.7 3IYQ
ASG LYS B 32 31 H AlphaHelix -66.35 -12.43 101.9 3IYQ
ASG SER B 33 32 H AlphaHelix -57.78 -33.78 0.0 3IYQ
ASG LEU B 34 33 H AlphaHelix -60.54 -41.33 30.7 3IYQ
ASG ARG B 35 34 H AlphaHelix -54.77 -48.33 125.1 3IYQ
ASG ALA B 36 35 H AlphaHelix -72.89 -56.34 54.7 3IYQ
ASG GLY B 37 36 C Coil 105.41 84.77 36.8 3IYQ
ASG LYS B 38 37 C Coil -119.25 5.40 84.9 3IYQ
ASG VAL B 39 38 C Coil -118.91 131.62 18.6 3IYQ
ASG ASP B 40 39 C Coil -135.39 165.46 62.7 3IYQ
ASG PHE B 41 40 T Turn -112.84 1.94 0.2 3IYQ
ASG THR B 42 41 T Turn -58.30 137.17 57.7 3IYQ
ASG GLY B 43 42 T Turn 80.47 5.42 33.9 3IYQ
ASG SER B 44 43 T Turn -118.32 129.71 0.2 3IYQ
ASG PHE B 45 44 E Strand -150.75 152.15 54.3 3IYQ
ASG ALA B 46 45 E Strand -65.79 152.03 0.3 3IYQ
ASG ARG B 47 46 E Strand -145.86 168.01 81.0 3IYQ
ASG PHE B 48 47 C Coil -146.41 143.47 62.7 3IYQ
ASG GLU B 49 48 C Coil 158.58 -35.94 112.8 3IYQ
ASG ASP B 50 49 T Turn -67.32 155.75 41.2 3IYQ
ASG GLY B 51 50 T Turn -74.72 -46.18 78.6 3IYQ
ASG GLU B 52 51 T Turn -65.86 150.98 88.1 3IYQ
ASG LEU B 53 52 T Turn -63.03 138.77 8.4 3IYQ
ASG TYR B 54 53 E Strand -131.02 157.42 47.9 3IYQ
ASG LEU B 55 54 E Strand -123.41 134.37 0.0 3IYQ
ASG GLU B 56 55 E Strand -143.13 163.01 11.8 3IYQ
ASG ASN B 57 56 C Coil 79.18 20.52 58.6 3IYQ
ASG LEU B 58 57 T Turn -87.37 112.98 0.0 3IYQ
ASG TYR B 59 58 T Turn -77.89 68.88 111.6 3IYQ
ASG ILE B 60 59 T Turn -67.12 -40.89 0.0 3IYQ
ASG ALA B 61 60 C Coil 56.86 65.25 30.8 3IYQ
ASG PRO B 62 61 C Coil -17.80 134.57 2.4 3IYQ
ASG TYR B 63 62 C Coil -144.91 117.72 89.8 3IYQ
ASG GLU B 64 63 C Coil -93.98 -98.07 0.2 3IYQ
ASG LYS B 65 64 C Coil -141.31 -62.78 153.1 3IYQ
ASG GLY B 66 65 C Coil -87.81 -127.34 40.7 3IYQ
ASG SER B 67 66 T Turn -108.56 -4.48 105.1 3IYQ
ASG TYR B 68 67 T Turn -21.36 -64.80 159.7 3IYQ
ASG ALA B 69 68 T Turn -154.65 66.77 42.6 3IYQ
ASG ASN B 70 69 T Turn -72.34 65.93 96.9 3IYQ
ASG VAL B 71 70 C Coil -63.10 151.80 61.0 3IYQ
ASG ASP B 72 71 T Turn -62.06 124.82 78.1 3IYQ
ASG PRO B 73 72 T Turn -86.67 -16.60 12.2 3IYQ
ASG ARG B 74 73 T Turn -67.40 -37.58 95.9 3IYQ
ASG ARG B 75 74 T Turn -28.72 140.65 82.2 3IYQ
ASG LYS B 76 75 C Coil -54.10 130.38 75.9 3IYQ
ASG ARG B 77 76 E Strand -138.16 135.52 8.2 3IYQ
ASG LYS B 78 77 E Strand -64.88 148.20 90.4 3IYQ
ASG LEU B 79 78 C Coil -111.45 108.67 7.6 3IYQ
ASG LEU B 80 79 B Bridge -81.12 135.53 118.7 3IYQ
ASG LEU B 81 80 C Coil -174.27 82.37 16.0 3IYQ
ASG HIS B 82 81 C Coil -28.59 139.56 99.9 3IYQ
ASG LYS B 83 82 H AlphaHelix -59.53 -28.57 123.4 3IYQ
ASG HIS B 84 83 H AlphaHelix -60.09 -36.81 121.9 3IYQ
ASG GLU B 85 84 H AlphaHelix -79.34 -55.50 65.8 3IYQ
ASG LEU B 86 85 H AlphaHelix -63.00 -42.86 26.3 3IYQ
ASG ARG B 87 86 H AlphaHelix -85.04 13.66 185.8 3IYQ
ASG ARG B 88 87 T Turn -118.23 10.94 194.0 3IYQ
ASG LEU B 89 88 T Turn -150.00 -3.56 6.8 3IYQ
ASG LEU B 90 89 H AlphaHelix -55.26 -39.11 59.3 3IYQ
ASG GLY B 91 90 H AlphaHelix -60.45 -25.92 19.1 3IYQ
ASG LYS B 92 91 H AlphaHelix -63.90 -39.03 46.1 3IYQ
ASG VAL B 93 92 H AlphaHelix -64.23 -45.58 0.0 3IYQ
ASG GLU B 94 93 H AlphaHelix -65.43 -52.87 81.3 3IYQ
ASG GLN B 95 94 H AlphaHelix -98.25 3.67 145.9 3IYQ
ASG LYS B 96 95 T Turn 67.94 -13.28 72.6 3IYQ
ASG GLY B 97 96 T Turn -75.94 -14.13 37.9 3IYQ
ASG LEU B 98 97 T Turn -134.59 52.70 65.9 3IYQ
ASG THR B 99 98 E Strand -57.99 123.81 8.2 3IYQ
ASG LEU B 100 99 E Strand -66.08 109.39 0.2 3IYQ
ASG VAL B 101 100 E Strand -120.15 142.20 0.2 3IYQ
ASG PRO B 102 101 E Strand -55.81 119.44 0.0 3IYQ
ASG LEU B 103 102 E Strand -87.29 -43.99 19.2 3IYQ
ASG LYS B 104 103 E Strand -151.17 151.07 49.7 3IYQ
ASG ILE B 105 104 E Strand -111.95 145.07 10.1 3IYQ
ASG TYR B 106 105 E Strand -151.71 168.22 69.4 3IYQ
ASG PHE B 107 106 E Strand -105.82 135.44 99.2 3IYQ
ASG ASN B 108 107 T Turn -90.04 -148.60 29.5 3IYQ
ASG GLU B 109 108 T Turn -71.69 -15.20 145.3 3IYQ
ASG ARG B 110 109 T Turn -142.73 36.66 129.5 3IYQ
ASG GLY B 111 110 T Turn 76.14 1.41 52.2 3IYQ
ASG TYR B 112 111 C Coil -94.57 139.71 127.0 3IYQ
ASG ALA B 113 112 E Strand -68.44 117.10 15.0 3IYQ
ASG LYS B 114 113 E Strand -124.49 152.51 31.7 3IYQ
ASG VAL B 115 114 E Strand -122.86 133.91 0.0 3IYQ
ASG LEU B 116 115 E Strand -91.58 121.49 50.9 3IYQ
ASG LEU B 117 116 E Strand -109.44 112.58 0.0 3IYQ
ASG GLY B 118 117 E Strand -111.15 158.64 0.0 3IYQ
ASG LEU B 119 118 E Strand -81.97 94.79 1.0 3IYQ
ASG ALA B 120 119 E Strand -104.47 -165.92 0.0 3IYQ
ASG ARG B 121 120 C Coil -165.92 155.86 79.6 3IYQ
ASG GLY B 122 121 C Coil 60.87 29.47 72.3 3IYQ
ASG LYS B 123 122 C Coil -112.00 360.00 18.5 3IYQ