Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3ldy.std.txt Дата изменения: Wed May 23 13:18:01 2012 Дата индексирования: Tue Oct 2 12:31:26 2012 Кодировка:

REM -------------------------------------------------------------------- 3LDY
REM 3LDY
REM STRIDE: Knowledge-based secondary structure assignment 3LDY
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3LDY
REM 3LDY
REM Residue accessible surface area calculation 3LDY
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3LDY
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3LDY
REM 3LDY
REM ------------------------ General information ----------------------- 3LDY
REM 3LDY
HDR HYDROLASE/DNA 13-JAN-10 3LDY 3LDY
CMP MOL_ID: 1; 3LDY
CMP MOLECULE: RESTRICTION ENDONUCLEASE PACI; 3LDY
CMP CHAIN: A; 3LDY
CMP ENGINEERED: YES; 3LDY
CMP MOL_ID: 2; 3LDY
CMP MOLECULE: DNA (5'-D(*GP*AP*GP*GP*CP*TP*TP*A)-3'); 3LDY
CMP CHAIN: B; 3LDY
CMP ENGINEERED: YES; 3LDY
CMP MOL_ID: 3; 3LDY
CMP MOLECULE: DNA (5'-D(P*AP*TP*TP*AP*AP*GP*CP*CP*TP*C)-3'); 3LDY
CMP CHAIN: C; 3LDY
CMP ENGINEERED: YES 3LDY
SRC MOL_ID: 1; 3LDY
SRC ORGANISM_SCIENTIFIC: PSEUDOMONAS ALCALIGENES; 3LDY
SRC ORGANISM_TAXID: 43263; 3LDY
SRC GENE: PACIR; 3LDY
SRC EXPRESSION_SYSTEM: PSEUDOMONAS ALCALIGENES; 3LDY
SRC EXPRESSION_SYSTEM_TAXID: 43263; 3LDY
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3LDY
SRC EXPRESSION_SYSTEM_PLASMID: PVS1; 3LDY
SRC MOL_ID: 2; 3LDY
SRC SYNTHETIC: YES; 3LDY
SRC MOL_ID: 3; 3LDY
SRC SYNTHETIC: YES 3LDY
AUT B.W.SHEN,D.HEITER,S.-H.CHAN,S.-Y.XU,G.WILSON,B.L.STODDARD 3LDY
REM 3LDY
REM -------------------- Secondary structure summary ------------------- 3LDY
REM 3LDY
CHN /data/npidb/pdb/pdb_new/all/pdb3ldy.pdb A 3LDY
REM 3LDY
REM . . . . . 3LDY
SEQ 1 MTQCPRCQRNLAADEFYAGSSKMCKGCMTWQNLSYNANKEGHANTFTKAT 50 3LDY
STR EETTTTT EE GGGB BHHHHHHHHHHHHHHHH B HHH 3LDY
REM 3LDY
REM . . . . . 3LDY
SEQ 51 FLAWYGLSAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRSDSFEGY 100 3LDY
STR HHHHH GGG BTTTTT BHHHHHH BTTTT B EEEETTTTT B 3LDY
REM 3LDY
REM . . . . 3LDY
SEQ 101 SPQNARLACFICNRIKSNIFSASEMDVLGEAISKAWHGRGIA 142 3LDY
STR TTTTEEEE HHHHHHHTTTT HHHHHHHHHHHHHHHHHH 3LDY
REM 3LDY
REM 3LDY
REM 3LDY
LOC AlphaHelix LYS 25 A GLU 40 A 3LDY
LOC AlphaHelix LYS 48 A TYR 55 A 3LDY
LOC AlphaHelix GLU 70 A SER 75 A 3LDY
LOC AlphaHelix PHE 110 A LYS 116 A 3LDY
LOC AlphaHelix ALA 122 A ARG 139 A 3LDY
LOC 310Helix ALA 13 A GLU 15 A 3LDY
LOC 310Helix SER 58 A GLN 60 A 3LDY
LOC Strand THR 2 A GLN 3 A 3LDY
LOC Strand ASN 10 A LEU 11 A 3LDY
LOC Strand GLY 90 A ARG 93 A 3LDY
LOC Strand ALA 105 A ALA 108 A 3LDY
LOC TurnIV CYS 4 A CYS 7 A 3LDY
LOC TurnIV PRO 5 A GLN 8 A 3LDY
LOC TurnIV CYS 63 A CYS 66 A 3LDY
LOC TurnI GLY 64 A GLY 67 A 3LDY
LOC TurnI ASN 80 A GLY 83 A 3LDY
LOC TurnVIII ARG 93 A SER 96 A 3LDY
LOC TurnI ASP 95 A GLU 98 A 3LDY
LOC TurnI SER 101 A ASN 104 A 3LDY
LOC TurnI PRO 102 A ALA 105 A 3LDY
LOC TurnII' LYS 116 A ILE 119 A 3LDY
LOC TurnIV SER 117 A PHE 120 A 3LDY
REM 3LDY
REM --------------- Detailed secondary structure assignment------------- 3LDY
REM 3LDY
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3LDY
ASG MET A 1 1 C Coil 360.00 124.05 172.0 3LDY
ASG THR A 2 2 E Strand -141.49 173.24 93.0 3LDY
ASG GLN A 3 3 E Strand -101.32 133.72 114.7 3LDY
ASG CYS A 4 4 T Turn -79.83 125.57 0.0 3LDY
ASG PRO A 5 5 T Turn -65.03 -9.80 87.9 3LDY
ASG ARG A 6 6 T Turn -101.37 -63.11 120.2 3LDY
ASG CYS A 7 7 T Turn -84.00 -8.71 29.7 3LDY
ASG GLN A 8 8 T Turn 56.66 15.46 120.0 3LDY
ASG ARG A 9 9 C Coil -70.77 150.81 65.8 3LDY
ASG ASN A 10 10 E Strand -91.12 112.91 103.4 3LDY
ASG LEU A 11 11 E Strand -130.01 151.09 8.9 3LDY
ASG ALA A 12 12 C Coil -69.93 154.54 49.4 3LDY
ASG ALA A 13 13 G 310Helix -46.97 -31.66 84.0 3LDY
ASG ASP A 14 14 G 310Helix -75.21 -4.24 70.9 3LDY
ASG GLU A 15 15 G 310Helix -92.63 -6.03 1.0 3LDY
ASG PHE A 16 16 B Bridge -107.16 164.79 32.6 3LDY
ASG TYR A 17 17 C Coil -86.29 163.82 42.6 3LDY
ASG ALA A 18 18 C Coil -92.29 -24.28 90.6 3LDY
ASG GLY A 19 19 C Coil -85.88 -154.58 54.6 3LDY
ASG SER A 20 20 C Coil -82.16 -2.11 125.5 3LDY
ASG SER A 21 21 C Coil -73.52 139.29 43.6 3LDY
ASG LYS A 22 22 C Coil -96.49 -27.78 175.2 3LDY
ASG MET A 23 23 C Coil -74.96 154.96 31.0 3LDY
ASG CYS A 24 24 B Bridge -70.04 166.95 0.0 3LDY
ASG LYS A 25 25 H AlphaHelix -61.70 -37.60 12.4 3LDY
ASG GLY A 26 26 H AlphaHelix -62.59 -49.57 0.2 3LDY
ASG CYS A 27 27 H AlphaHelix -59.09 -48.88 2.3 3LDY
ASG MET A 28 28 H AlphaHelix -62.31 -42.29 35.9 3LDY
ASG THR A 29 29 H AlphaHelix -66.66 -38.48 14.1 3LDY
ASG TRP A 30 30 H AlphaHelix -62.64 -47.11 41.3 3LDY
ASG GLN A 31 31 H AlphaHelix -58.81 -46.71 84.9 3LDY
ASG ASN A 32 32 H AlphaHelix -55.38 -46.81 72.6 3LDY
ASG LEU A 33 33 H AlphaHelix -58.12 -46.35 5.5 3LDY
ASG SER A 34 34 H AlphaHelix -68.67 -43.12 42.9 3LDY
ASG TYR A 35 35 H AlphaHelix -64.90 -45.59 147.4 3LDY
ASG ASN A 36 36 H AlphaHelix -63.17 -43.74 54.7 3LDY
ASG ALA A 37 37 H AlphaHelix -59.84 -49.82 4.5 3LDY
ASG ASN A 38 38 H AlphaHelix -55.11 -51.90 138.6 3LDY
ASG LYS A 39 39 H AlphaHelix -61.85 -36.56 120.8 3LDY
ASG GLU A 40 40 H AlphaHelix -95.45 -2.06 106.3 3LDY
ASG GLY A 41 41 C Coil 65.69 34.76 66.8 3LDY
ASG HIS A 42 42 C Coil -94.81 142.79 44.8 3LDY
ASG ALA A 43 43 C Coil -70.44 157.50 66.9 3LDY
ASG ASN A 44 44 B Bridge -141.18 104.96 50.3 3LDY
ASG THR A 45 45 C Coil -92.26 -10.04 96.9 3LDY
ASG PHE A 46 46 C Coil -58.96 142.00 8.8 3LDY
ASG THR A 47 47 C Coil -97.90 166.99 85.4 3LDY
ASG LYS A 48 48 H AlphaHelix -57.04 -45.91 59.5 3LDY
ASG ALA A 49 49 H AlphaHelix -58.53 -51.40 75.9 3LDY
ASG THR A 50 50 H AlphaHelix -65.79 -34.70 59.4 3LDY
ASG PHE A 51 51 H AlphaHelix -62.42 -48.26 0.0 3LDY
ASG LEU A 52 52 H AlphaHelix -61.21 -37.60 21.7 3LDY
ASG ALA A 53 53 H AlphaHelix -70.94 -35.91 83.1 3LDY
ASG TRP A 54 54 H AlphaHelix -64.65 -47.08 82.0 3LDY
ASG TYR A 55 55 H AlphaHelix -66.69 -27.60 5.4 3LDY
ASG GLY A 56 56 C Coil 62.87 -144.20 28.7 3LDY
ASG LEU A 57 57 C Coil -122.96 153.98 90.2 3LDY
ASG SER A 58 58 G 310Helix -49.45 -45.15 9.6 3LDY
ASG ALA A 59 59 G 310Helix -72.33 -13.52 66.8 3LDY
ASG GLN A 60 60 G 310Helix -96.50 -11.38 150.6 3LDY
ASG ARG A 61 61 C Coil -82.66 129.00 5.3 3LDY
ASG HIS A 62 62 B Bridge -141.79 141.67 87.2 3LDY
ASG CYS A 63 63 T Turn -52.49 129.43 3.5 3LDY
ASG GLY A 64 64 T Turn -78.75 -2.28 37.1 3LDY
ASG TYR A 65 65 T Turn -98.66 -57.06 12.7 3LDY
ASG CYS A 66 66 T Turn -99.86 -11.74 3.7 3LDY
ASG GLY A 67 67 T Turn 79.45 0.25 38.4 3LDY
ASG ILE A 68 68 C Coil -62.33 135.31 2.3 3LDY
ASG SER A 69 69 B Bridge -71.63 159.60 23.3 3LDY
ASG GLU A 70 70 H AlphaHelix -58.28 -38.96 1.3 3LDY
ASG ALA A 71 71 H AlphaHelix -68.11 -40.13 73.4 3LDY
ASG GLY A 72 72 H AlphaHelix -59.29 -42.29 7.4 3LDY
ASG PHE A 73 73 H AlphaHelix -68.82 -41.64 0.2 3LDY
ASG THR A 74 74 H AlphaHelix -52.67 -41.48 33.3 3LDY
ASG SER A 75 75 H AlphaHelix -68.58 -7.56 58.4 3LDY
ASG LEU A 76 76 C Coil -86.38 -9.82 29.6 3LDY
ASG HIS A 77 77 C Coil 48.60 54.63 126.4 3LDY
ASG ARG A 78 78 C Coil -81.55 151.93 116.5 3LDY
ASG THR A 79 79 B Bridge -113.11 140.69 83.9 3LDY
ASG ASN A 80 80 T Turn -76.66 175.92 55.5 3LDY
ASG PRO A 81 81 T Turn -62.18 -10.09 105.5 3LDY
ASG ARG A 82 82 T Turn -84.04 -15.05 197.7 3LDY
ASG GLY A 83 83 T Turn -109.85 107.84 43.5 3LDY
ASG TYR A 84 84 C Coil -98.56 163.31 154.3 3LDY
ASG HIS A 85 85 B Bridge -66.43 125.35 60.2 3LDY
ASG ILE A 86 86 C Coil -82.90 128.43 19.6 3LDY
ASG GLN A 87 87 C Coil -126.52 3.42 27.3 3LDY
ASG CYS A 88 88 C Coil -146.85 164.35 16.4 3LDY
ASG LEU A 89 89 C Coil -89.53 147.51 0.0 3LDY
ASG GLY A 90 90 E Strand -109.60 -168.50 23.6 3LDY
ASG VAL A 91 91 E Strand -112.94 135.34 15.4 3LDY
ASG ASP A 92 92 E Strand -98.63 129.46 3.0 3LDY
ASG ARG A 93 93 E Strand -77.87 93.61 44.1 3LDY
ASG SER A 94 94 T Turn -55.78 -48.69 25.4 3LDY
ASG ASP A 95 95 T Turn -78.51 108.89 77.6 3LDY
ASG SER A 96 96 T Turn -69.82 -10.98 29.8 3LDY
ASG PHE A 97 97 T Turn -85.62 -15.15 199.0 3LDY
ASG GLU A 98 98 T Turn -102.68 165.99 119.7 3LDY
ASG GLY A 99 99 C Coil -89.39 -157.20 7.7 3LDY
ASG TYR A 100 100 B Bridge -87.09 124.55 26.4 3LDY
ASG SER A 101 101 T Turn -162.66 155.85 25.3 3LDY
ASG PRO A 102 102 T Turn -55.21 -44.04 64.0 3LDY
ASG GLN A 103 103 T Turn -64.05 -35.71 174.8 3LDY
ASG ASN A 104 104 T Turn -93.78 -15.75 14.3 3LDY
ASG ALA A 105 105 E Strand -79.98 145.28 14.2 3LDY
ASG ARG A 106 106 E Strand -145.67 138.33 66.9 3LDY
ASG LEU A 107 107 E Strand -72.30 126.46 28.2 3LDY
ASG ALA A 108 108 E Strand -141.60 146.48 0.3 3LDY
ASG CYS A 109 109 C Coil -70.02 155.35 0.0 3LDY
ASG PHE A 110 110 H AlphaHelix -63.02 -24.70 63.2 3LDY
ASG ILE A 111 111 H AlphaHelix -68.14 -50.90 32.5 3LDY
ASG CYS A 112 112 H AlphaHelix -67.29 -36.23 0.0 3LDY
ASG ASN A 113 113 H AlphaHelix -61.59 -46.75 36.9 3LDY
ASG ARG A 114 114 H AlphaHelix -67.60 -37.34 136.2 3LDY
ASG ILE A 115 115 H AlphaHelix -59.50 -48.82 67.4 3LDY
ASG LYS A 116 116 H AlphaHelix -60.82 -42.44 0.2 3LDY
ASG SER A 117 117 T Turn 44.04 -135.64 56.6 3LDY
ASG ASN A 118 118 T Turn -109.26 27.66 120.9 3LDY
ASG ILE A 119 119 T Turn -96.87 -52.37 112.7 3LDY
ASG PHE A 120 120 T Turn -98.60 144.44 76.3 3LDY
ASG SER A 121 121 C Coil -74.07 161.87 51.7 3LDY
ASG ALA A 122 122 H AlphaHelix -56.23 -42.60 20.3 3LDY
ASG SER A 123 123 H AlphaHelix -67.86 -35.64 83.0 3LDY
ASG GLU A 124 124 H AlphaHelix -63.97 -40.59 110.4 3LDY
ASG MET A 125 125 H AlphaHelix -67.96 -30.53 0.0 3LDY
ASG ASP A 126 126 H AlphaHelix -55.10 -42.18 57.8 3LDY
ASG VAL A 127 127 H AlphaHelix -69.91 -43.36 99.3 3LDY
ASG LEU A 128 128 H AlphaHelix -57.45 -42.56 54.6 3LDY
ASG GLY A 129 129 H AlphaHelix -54.60 -42.59 0.0 3LDY
ASG GLU A 130 130 H AlphaHelix -62.87 -34.94 122.2 3LDY
ASG ALA A 131 131 H AlphaHelix -72.67 -40.98 58.8 3LDY
ASG ILE A 132 132 H AlphaHelix -57.85 -43.35 21.6 3LDY
ASG SER A 133 133 H AlphaHelix -56.66 -35.56 46.7 3LDY
ASG LYS A 134 134 H AlphaHelix -66.60 -40.77 152.3 3LDY
ASG ALA A 135 135 H AlphaHelix -53.24 -54.46 44.5 3LDY
ASG TRP A 136 136 H AlphaHelix -59.14 -49.79 16.0 3LDY
ASG HIS A 137 137 H AlphaHelix -54.42 -41.90 155.6 3LDY
ASG GLY A 138 138 H AlphaHelix -66.54 -35.35 66.2 3LDY
ASG ARG A 139 139 H AlphaHelix -77.67 3.45 174.0 3LDY
ASG GLY A 140 140 C Coil 69.26 39.23 71.2 3LDY
ASG ILE A 141 141 C Coil -127.87 133.00 38.9 3LDY
ASG ALA A 142 142 C Coil -120.43 360.00 94.9 3LDY