Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3pvp.std.txt Дата изменения: Thu May 24 20:49:07 2012 Дата индексирования: Tue Oct 2 12:36:26 2012 Кодировка:

REM -------------------------------------------------------------------- 3PVP
REM 3PVP
REM STRIDE: Knowledge-based secondary structure assignment 3PVP
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3PVP
REM 3PVP
REM Residue accessible surface area calculation 3PVP
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3PVP
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3PVP
REM 3PVP
REM ------------------------ General information ----------------------- 3PVP
REM 3PVP
HDR DNA BINDING PROTEIN/DNA 07-DEC-10 3PVP 3PVP
CMP MOL_ID: 1; 3PVP
CMP MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; 3PVP
CMP CHAIN: A, B; 3PVP
CMP FRAGMENT: DNAA DBD; 3PVP
CMP ENGINEERED: YES; 3PVP
CMP MOL_ID: 2; 3PVP
CMP MOLECULE: DNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)- 3PVP
CMP CHAIN: C, E; 3PVP
CMP ENGINEERED: YES; 3PVP
CMP MOL_ID: 3; 3PVP
CMP MOLECULE: DNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)- 3PVP
CMP CHAIN: D, F; 3PVP
CMP ENGINEERED: YES 3PVP
SRC MOL_ID: 1; 3PVP
SRC ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; 3PVP
SRC ORGANISM_TAXID: 419947; 3PVP
SRC STRAIN: ATCC 25177 / H37RA; 3PVP
SRC GENE: DNAA, MRA_0001, RV0001; 3PVP
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3PVP
SRC EXPRESSION_SYSTEM_TAXID: 562; 3PVP
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 3PVP
SRC MOL_ID: 2; 3PVP
SRC SYNTHETIC: YES; 3PVP
SRC MOL_ID: 3; 3PVP
SRC SYNTHETIC: YES 3PVP
AUT O.V.TSODIKOV,T.BISWAS 3PVP
REM 3PVP
REM -------------------- Secondary structure summary ------------------- 3PVP
REM 3PVP
CHN /data/npidb/pdb/pdb_new/all/pdb3pvp.pdb A 3PVP
REM 3PVP
REM . . . . . 3PVP
SEQ 1 ISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLP 50 3PVP
STR HHHHHHHHHHHH HHHHH HHHHHHHHHHHHHHHHH HH 3PVP
REM 3PVP
REM . . . . 3PVP
SEQ 51 KIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK 96 3PVP
STR HHHHHH HHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHH 3PVP
REM 3PVP
CHN /data/npidb/pdb/pdb_new/all/pdb3pvp.pdb B 3PVP
REM 3PVP
REM . . . . . 3PVP
SEQ 1 ISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLP 50 3PVP
STR HHHHHHHHHHHH HHHHH HHHHHHHHHHHHHHHHH HH 3PVP
REM 3PVP
REM . . . . 3PVP
SEQ 51 KIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRS 95 3PVP
STR HHHHHH HHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHH 3PVP
REM 3PVP
REM 3PVP
REM 3PVP
LOC AlphaHelix ALA 413 A PHE 424 A 3PVP
LOC AlphaHelix VAL 428 A ARG 432 A 3PVP
LOC AlphaHelix ARG 438 A LEU 454 A 3PVP
LOC AlphaHelix LEU 459 A PHE 466 A 3PVP
LOC AlphaHelix HIS 470 A GLU 486 A 3PVP
LOC AlphaHelix ARG 488 A SER 505 A 3PVP
LOC AlphaHelix ALA 413 B PHE 424 B 3PVP
LOC AlphaHelix VAL 428 B ARG 432 B 3PVP
LOC AlphaHelix ARG 438 B LEU 454 B 3PVP
LOC AlphaHelix LEU 459 B PHE 466 B 3PVP
LOC AlphaHelix HIS 470 B GLU 486 B 3PVP
LOC AlphaHelix ARG 488 B ARG 504 B 3PVP
REM 3PVP
REM --------------- Detailed secondary structure assignment------------- 3PVP
REM 3PVP
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3PVP
ASG ILE A 411 1 C Coil 360.00 91.96 85.5 3PVP
ASG SER A 412 2 C Coil -84.18 154.92 55.3 3PVP
ASG ALA A 413 3 H AlphaHelix -66.42 -40.20 14.1 3PVP
ASG ALA A 414 4 H AlphaHelix -65.43 -39.41 62.1 3PVP
ASG THR A 415 5 H AlphaHelix -59.68 -39.92 51.8 3PVP
ASG ILE A 416 6 H AlphaHelix -75.53 -36.91 0.0 3PVP
ASG MET A 417 7 H AlphaHelix -63.27 -41.83 6.8 3PVP
ASG ALA A 418 8 H AlphaHelix -63.76 -47.15 38.8 3PVP
ASG ALA A 419 9 H AlphaHelix -64.06 -34.96 1.3 3PVP
ASG THR A 420 10 H AlphaHelix -71.09 -42.98 0.0 3PVP
ASG ALA A 421 11 H AlphaHelix -59.62 -45.85 4.0 3PVP
ASG GLU A 422 12 H AlphaHelix -60.28 -48.89 145.9 3PVP
ASG TYR A 423 13 H AlphaHelix -64.79 -38.53 52.2 3PVP
ASG PHE A 424 14 H AlphaHelix -99.51 13.71 49.6 3PVP
ASG ASP A 425 15 C Coil 52.27 55.91 151.7 3PVP
ASG THR A 426 16 C Coil -139.86 -166.53 37.6 3PVP
ASG THR A 427 17 C Coil -121.05 160.65 61.9 3PVP
ASG VAL A 428 18 H AlphaHelix -63.13 -30.82 51.9 3PVP
ASG GLU A 429 19 H AlphaHelix -59.32 -38.48 147.8 3PVP
ASG GLU A 430 20 H AlphaHelix -75.74 -37.91 94.4 3PVP
ASG LEU A 431 21 H AlphaHelix -60.99 -40.23 0.0 3PVP
ASG ARG A 432 22 H AlphaHelix -75.72 -32.35 122.2 3PVP
ASG GLY A 433 23 C Coil -72.31 175.54 16.9 3PVP
ASG PRO A 434 24 C Coil -82.25 -8.46 120.5 3PVP
ASG GLY A 435 25 C Coil -60.48 136.81 28.0 3PVP
ASG LYS A 436 26 C Coil -134.30 38.47 174.9 3PVP
ASG THR A 437 27 C Coil -68.73 147.43 105.5 3PVP
ASG ARG A 438 28 H AlphaHelix -38.97 -59.68 184.8 3PVP
ASG ALA A 439 29 H AlphaHelix -61.95 -41.83 53.9 3PVP
ASG LEU A 440 30 H AlphaHelix -65.67 -47.40 16.2 3PVP
ASG ALA A 441 31 H AlphaHelix -58.64 -44.45 21.6 3PVP
ASG GLN A 442 32 H AlphaHelix -67.94 -38.09 37.4 3PVP
ASG SER A 443 33 H AlphaHelix -57.83 -45.91 7.8 3PVP
ASG ARG A 444 34 H AlphaHelix -61.47 -45.57 11.6 3PVP
ASG GLN A 445 35 H AlphaHelix -63.88 -40.13 41.5 3PVP
ASG ILE A 446 36 H AlphaHelix -62.33 -37.16 1.8 3PVP
ASG ALA A 447 37 H AlphaHelix -71.05 -39.78 0.0 3PVP
ASG MET A 448 38 H AlphaHelix -61.73 -45.20 3.4 3PVP
ASG TYR A 449 39 H AlphaHelix -59.57 -43.75 0.6 3PVP
ASG LEU A 450 40 H AlphaHelix -67.69 -28.93 0.0 3PVP
ASG CYS A 451 41 H AlphaHelix -62.34 -43.34 0.0 3PVP
ASG ARG A 452 42 H AlphaHelix -66.49 -42.64 58.4 3PVP
ASG GLU A 453 43 H AlphaHelix -78.55 -30.34 25.4 3PVP
ASG LEU A 454 44 H AlphaHelix -99.49 -22.90 16.2 3PVP
ASG THR A 455 45 C Coil -128.79 166.99 11.2 3PVP
ASG ASP A 456 46 C Coil -96.94 5.65 144.2 3PVP
ASG LEU A 457 47 C Coil -59.37 144.46 49.6 3PVP
ASG SER A 458 48 C Coil -73.56 163.15 49.6 3PVP
ASG LEU A 459 49 H AlphaHelix -57.83 -40.09 26.3 3PVP
ASG PRO A 460 50 H AlphaHelix -68.84 -36.11 70.7 3PVP
ASG LYS A 461 51 H AlphaHelix -70.31 -35.48 105.9 3PVP
ASG ILE A 462 52 H AlphaHelix -68.35 -46.32 0.0 3PVP
ASG GLY A 463 53 H AlphaHelix -56.57 -28.84 1.2 3PVP
ASG GLN A 464 54 H AlphaHelix -76.95 -32.01 131.0 3PVP
ASG ALA A 465 55 H AlphaHelix -67.16 -28.70 29.4 3PVP
ASG PHE A 466 56 H AlphaHelix -106.63 10.04 0.0 3PVP
ASG GLY A 467 57 C Coil 50.47 45.45 39.8 3PVP
ASG ARG A 468 58 C Coil -134.93 159.41 60.9 3PVP
ASG ASP A 469 59 C Coil -66.16 142.30 89.3 3PVP
ASG HIS A 470 60 H AlphaHelix -57.49 -28.08 78.2 3PVP
ASG THR A 471 61 H AlphaHelix -74.01 -27.00 71.8 3PVP
ASG THR A 472 62 H AlphaHelix -65.64 -40.67 58.4 3PVP
ASG VAL A 473 63 H AlphaHelix -59.71 -44.98 0.6 3PVP
ASG MET A 474 64 H AlphaHelix -58.94 -43.34 95.1 3PVP
ASG TYR A 475 65 H AlphaHelix -62.00 -49.25 132.4 3PVP
ASG ALA A 476 66 H AlphaHelix -53.76 -43.12 1.0 3PVP
ASG GLN A 477 67 H AlphaHelix -60.09 -47.94 30.3 3PVP
ASG ARG A 478 68 H AlphaHelix -64.59 -41.54 131.3 3PVP
ASG LYS A 479 69 H AlphaHelix -62.85 -50.17 76.7 3PVP
ASG ILE A 480 70 H AlphaHelix -67.25 -38.96 0.0 3PVP
ASG LEU A 481 71 H AlphaHelix -59.34 -38.78 0.4 3PVP
ASG SER A 482 72 H AlphaHelix -71.40 -38.88 50.2 3PVP
ASG GLU A 483 73 H AlphaHelix -69.53 -34.52 55.0 3PVP
ASG MET A 484 74 H AlphaHelix -65.78 -35.47 2.4 3PVP
ASG ALA A 485 75 H AlphaHelix -65.23 -42.61 10.6 3PVP
ASG GLU A 486 76 H AlphaHelix -84.93 -28.17 79.9 3PVP
ASG ARG A 487 77 C Coil -127.28 113.49 91.4 3PVP
ASG ARG A 488 78 H AlphaHelix -59.18 -29.95 109.8 3PVP
ASG GLU A 489 79 H AlphaHelix -66.22 -40.08 87.3 3PVP
ASG VAL A 490 80 H AlphaHelix -72.02 -44.20 3.7 3PVP
ASG PHE A 491 81 H AlphaHelix -55.94 -50.88 0.0 3PVP
ASG ASP A 492 82 H AlphaHelix -64.19 -32.50 54.4 3PVP
ASG HIS A 493 83 H AlphaHelix -69.28 -51.04 83.4 3PVP
ASG VAL A 494 84 H AlphaHelix -58.56 -45.44 0.4 3PVP
ASG LYS A 495 85 H AlphaHelix -56.78 -41.58 17.7 3PVP
ASG GLU A 496 86 H AlphaHelix -72.12 -43.14 73.4 3PVP
ASG LEU A 497 87 H AlphaHelix -58.79 -47.87 0.8 3PVP
ASG THR A 498 88 H AlphaHelix -50.08 -55.37 6.6 3PVP
ASG THR A 499 89 H AlphaHelix -49.79 -50.05 77.7 3PVP
ASG ARG A 500 90 H AlphaHelix -63.39 -37.58 119.8 3PVP
ASG ILE A 501 91 H AlphaHelix -69.15 -47.69 0.2 3PVP
ASG ARG A 502 92 H AlphaHelix -61.52 -37.72 67.4 3PVP
ASG GLN A 503 93 H AlphaHelix -63.44 -40.20 149.9 3PVP
ASG ARG A 504 94 H AlphaHelix -67.73 -43.00 126.6 3PVP
ASG SER A 505 95 H AlphaHelix -85.73 50.96 54.5 3PVP
ASG LYS A 506 96 C Coil 47.75 360.00 125.1 3PVP
ASG ILE B 411 1 C Coil 360.00 136.60 108.1 3PVP
ASG SER B 412 2 C Coil -110.45 164.52 48.9 3PVP
ASG ALA B 413 3 H AlphaHelix -61.19 -35.17 8.4 3PVP
ASG ALA B 414 4 H AlphaHelix -64.48 -45.31 68.9 3PVP
ASG THR B 415 5 H AlphaHelix -61.00 -45.04 61.4 3PVP
ASG ILE B 416 6 H AlphaHelix -64.90 -44.08 0.0 3PVP
ASG MET B 417 7 H AlphaHelix -61.00 -41.81 5.0 3PVP
ASG ALA B 418 8 H AlphaHelix -65.62 -45.47 44.2 3PVP
ASG ALA B 419 9 H AlphaHelix -64.66 -31.55 16.4 3PVP
ASG THR B 420 10 H AlphaHelix -74.23 -44.86 0.0 3PVP
ASG ALA B 421 11 H AlphaHelix -57.63 -44.62 4.4 3PVP
ASG GLU B 422 12 H AlphaHelix -62.17 -48.83 136.1 3PVP
ASG TYR B 423 13 H AlphaHelix -60.21 -41.94 46.1 3PVP
ASG PHE B 424 14 H AlphaHelix -97.28 10.18 43.0 3PVP
ASG ASP B 425 15 C Coil 55.43 60.16 150.6 3PVP
ASG THR B 426 16 C Coil -142.02 -171.29 34.9 3PVP
ASG THR B 427 17 C Coil -113.73 152.56 67.9 3PVP
ASG VAL B 428 18 H AlphaHelix -60.37 -36.04 40.4 3PVP
ASG GLU B 429 19 H AlphaHelix -61.07 -35.54 114.8 3PVP
ASG GLU B 430 20 H AlphaHelix -78.85 -26.83 99.6 3PVP
ASG LEU B 431 21 H AlphaHelix -67.18 -36.74 0.0 3PVP
ASG ARG B 432 22 H AlphaHelix -78.11 -24.39 138.7 3PVP
ASG GLY B 433 23 C Coil -69.28 173.35 17.9 3PVP
ASG PRO B 434 24 C Coil -90.51 7.32 123.2 3PVP
ASG GLY B 435 25 C Coil -75.72 130.78 30.5 3PVP
ASG LYS B 436 26 C Coil -126.52 34.14 173.9 3PVP
ASG THR B 437 27 C Coil -60.24 144.27 99.5 3PVP
ASG ARG B 438 28 H AlphaHelix -38.74 -52.01 195.4 3PVP
ASG ALA B 439 29 H AlphaHelix -66.35 -44.38 68.7 3PVP
ASG LEU B 440 30 H AlphaHelix -63.18 -46.70 16.0 3PVP
ASG ALA B 441 31 H AlphaHelix -55.46 -45.30 19.0 3PVP
ASG GLN B 442 32 H AlphaHelix -61.39 -46.97 47.5 3PVP
ASG SER B 443 33 H AlphaHelix -55.40 -49.69 5.2 3PVP
ASG ARG B 444 34 H AlphaHelix -60.94 -44.53 12.2 3PVP
ASG GLN B 445 35 H AlphaHelix -65.64 -42.18 42.3 3PVP
ASG ILE B 446 36 H AlphaHelix -61.72 -38.86 0.2 3PVP
ASG ALA B 447 37 H AlphaHelix -63.44 -41.66 0.0 3PVP
ASG MET B 448 38 H AlphaHelix -65.77 -43.82 2.2 3PVP
ASG TYR B 449 39 H AlphaHelix -53.76 -47.76 1.8 3PVP
ASG LEU B 450 40 H AlphaHelix -69.32 -23.08 0.0 3PVP
ASG CYS B 451 41 H AlphaHelix -65.16 -41.02 0.0 3PVP
ASG ARG B 452 42 H AlphaHelix -69.57 -37.38 4.4 3PVP
ASG GLU B 453 43 H AlphaHelix -74.23 -36.64 22.4 3PVP
ASG LEU B 454 44 H AlphaHelix -110.06 -8.79 51.5 3PVP
ASG THR B 455 45 C Coil -131.57 171.99 7.9 3PVP
ASG ASP B 456 46 C Coil -109.29 23.28 148.5 3PVP
ASG LEU B 457 47 C Coil -66.26 138.80 57.1 3PVP
ASG SER B 458 48 C Coil -67.43 161.73 55.0 3PVP
ASG LEU B 459 49 H AlphaHelix -57.52 -42.91 23.8 3PVP
ASG PRO B 460 50 H AlphaHelix -64.98 -31.96 75.3 3PVP
ASG LYS B 461 51 H AlphaHelix -66.55 -45.68 116.3 3PVP
ASG ILE B 462 52 H AlphaHelix -64.22 -44.90 0.0 3PVP
ASG GLY B 463 53 H AlphaHelix -56.99 -29.81 1.8 3PVP
ASG GLN B 464 54 H AlphaHelix -69.12 -43.92 138.8 3PVP
ASG ALA B 465 55 H AlphaHelix -61.60 -25.77 30.7 3PVP
ASG PHE B 466 56 H AlphaHelix -106.40 -6.10 0.4 3PVP
ASG GLY B 467 57 C Coil 62.65 50.91 62.2 3PVP
ASG ARG B 468 58 C Coil -143.23 159.40 60.0 3PVP
ASG ASP B 469 59 C Coil -63.98 148.65 92.1 3PVP
ASG HIS B 470 60 H AlphaHelix -63.96 -27.04 71.2 3PVP
ASG THR B 471 61 H AlphaHelix -72.86 -19.53 72.4 3PVP
ASG THR B 472 62 H AlphaHelix -72.11 -36.35 55.9 3PVP
ASG VAL B 473 63 H AlphaHelix -68.29 -41.88 0.0 3PVP
ASG MET B 474 64 H AlphaHelix -56.51 -43.89 92.4 3PVP
ASG TYR B 475 65 H AlphaHelix -61.07 -47.98 137.1 3PVP
ASG ALA B 476 66 H AlphaHelix -59.27 -50.58 1.0 3PVP
ASG GLN B 477 67 H AlphaHelix -54.49 -48.20 19.8 3PVP
ASG ARG B 478 68 H AlphaHelix -65.85 -42.08 123.6 3PVP
ASG LYS B 479 69 H AlphaHelix -60.18 -46.87 82.1 3PVP
ASG ILE B 480 70 H AlphaHelix -66.82 -42.09 0.6 3PVP
ASG LEU B 481 71 H AlphaHelix -60.56 -40.67 0.0 3PVP
ASG SER B 482 72 H AlphaHelix -64.45 -39.78 41.6 3PVP
ASG GLU B 483 73 H AlphaHelix -65.15 -45.65 23.1 3PVP
ASG MET B 484 74 H AlphaHelix -57.42 -36.86 5.6 3PVP
ASG ALA B 485 75 H AlphaHelix -71.70 -34.93 13.6 3PVP
ASG GLU B 486 76 H AlphaHelix -97.91 -25.62 125.0 3PVP
ASG ARG B 487 77 C Coil -119.92 119.73 101.1 3PVP
ASG ARG B 488 78 H AlphaHelix -53.54 -43.77 173.5 3PVP
ASG GLU B 489 79 H AlphaHelix -62.10 -44.06 114.3 3PVP
ASG VAL B 490 80 H AlphaHelix -65.51 -45.03 2.8 3PVP
ASG PHE B 491 81 H AlphaHelix -55.47 -44.89 12.9 3PVP
ASG ASP B 492 82 H AlphaHelix -66.86 -41.41 63.2 3PVP
ASG HIS B 493 83 H AlphaHelix -59.10 -49.89 62.7 3PVP
ASG VAL B 494 84 H AlphaHelix -59.24 -49.68 6.2 3PVP
ASG LYS B 495 85 H AlphaHelix -57.31 -46.48 57.6 3PVP
ASG GLU B 496 86 H AlphaHelix -65.84 -42.13 69.5 3PVP
ASG LEU B 497 87 H AlphaHelix -67.00 -38.77 1.2 3PVP
ASG THR B 498 88 H AlphaHelix -68.39 -34.92 24.7 3PVP
ASG THR B 499 89 H AlphaHelix -59.52 -48.14 24.9 3PVP
ASG ARG B 500 90 H AlphaHelix -60.10 -46.99 126.7 3PVP
ASG ILE B 501 91 H AlphaHelix -56.59 -40.12 12.2 3PVP
ASG ARG B 502 92 H AlphaHelix -66.36 -51.02 102.8 3PVP
ASG GLN B 503 93 H AlphaHelix -62.56 -33.55 146.9 3PVP
ASG ARG B 504 94 H AlphaHelix -69.68 21.70 192.6 3PVP
ASG SER B 505 95 C Coil 45.19 360.00 138.6 3PVP