Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3qmc.std.txt Дата изменения: Thu May 24 22:39:34 2012 Дата индексирования: Tue Oct 2 12:37:40 2012 Кодировка:

REM -------------------------------------------------------------------- 3QMC
REM 3QMC
REM STRIDE: Knowledge-based secondary structure assignment 3QMC
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3QMC
REM 3QMC
REM Residue accessible surface area calculation 3QMC
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3QMC
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3QMC
REM 3QMC
REM ------------------------ General information ----------------------- 3QMC
REM 3QMC
HDR DNA BINDING PROTEIN/DNA 04-FEB-11 3QMC 3QMC
CMP MOL_ID: 1; 3QMC
CMP MOLECULE: CPG-BINDING PROTEIN; 3QMC
CMP CHAIN: A; 3QMC
CMP FRAGMENT: CXXC-TYPE ZN FINGER, RESIDUES 161-222; 3QMC
CMP SYNONYM: CXXC-TYPE ZINC FINGER PROTEIN 1, PHD FINGER AND CXX 3QMC
CMP CONTAINING PROTEIN 1; 3QMC
CMP ENGINEERED: YES; 3QMC
CMP MOL_ID: 2; 3QMC
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*CP*CP*GP*CP*TP*GP*GP*C)-3'; 3QMC
CMP CHAIN: B; 3QMC
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMC
CMP ENGINEERED: YES; 3QMC
CMP MOL_ID: 3; 3QMC
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*GP*CP*GP*GP*TP*GP*GP*C)-3'; 3QMC
CMP CHAIN: C; 3QMC
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMC
CMP ENGINEERED: YES 3QMC
SRC MOL_ID: 1; 3QMC
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3QMC
SRC ORGANISM_COMMON: HUMAN; 3QMC
SRC ORGANISM_TAXID: 9606; 3QMC
SRC GENE: CXXC1; 3QMC
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3QMC
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3QMC
SRC EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; 3QMC
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3QMC
SRC EXPRESSION_SYSTEM_PLASMID: PET28-MHL; 3QMC
SRC MOL_ID: 2; 3QMC
SRC SYNTHETIC: YES; 3QMC
SRC OTHER_DETAILS: DNA WAS PURCHASED FROM INTEGRATED DNA TECHNOL 3QMC
SRC INC.; 3QMC
SRC MOL_ID: 3; 3QMC
SRC SYNTHETIC: YES; 3QMC
SRC OTHER_DETAILS: DNA WAS PURCHASED FROM INTEGRATED DNA TECHNOL 3QMC
SRC INC. 3QMC
AUT R.LAM,C.XU,C.B.BIAN,J.KANIA,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMIT 3QMC
AUT A.M.EDWARDS,A.BOCHKAREV,J.MIN,STRUCTURAL GENOMICS CONSORTIUM 3QMC
REM 3QMC
REM -------------------- Secondary structure summary ------------------- 3QMC
REM 3QMC
CHN /data/npidb/pdb/pdb_new/all/pdb3qmc.pdb A 3QMC
REM 3QMC
REM . . . . . 3QMC
SEQ 1 SARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARE 50 3QMC
STR TTTTTTTTHHHH TTTTHHHHH GGG TTTT GGG TTTTT G 3QMC
REM 3QMC
REM 3QMC
SEQ 51 SYK 53 3QMC
STR GG 3QMC
REM 3QMC
REM 3QMC
REM 3QMC
LOC AlphaHelix GLU 177 A ARG 180 A 3QMC
LOC AlphaHelix ASP 189 A ASP 193 A 3QMC
LOC 310Helix LYS 195 A PHE 197 A 3QMC
LOC 310Helix ARG 208 A ARG 210 A 3QMC
LOC 310Helix GLU 218 A TYR 220 A 3QMC
LOC TurnI SER 169 A MET 172 A 3QMC
LOC TurnIV CYS 173 A CYS 176 A 3QMC
LOC TurnIV CYS 185 A CYS 188 A 3QMC
LOC TurnIV ASN 201 A ARG 204 A 3QMC
LOC TurnIV CYS 212 A ARG 215 A 3QMC
LOC TurnI GLN 213 A ALA 216 A 3QMC
REM 3QMC
REM --------------- Detailed secondary structure assignment------------- 3QMC
REM 3QMC
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3QMC
ASG SER A 169 1 T Turn 360.00 164.64 108.5 3QMC
ASG ALA A 170 2 T Turn -45.00 -48.26 87.9 3QMC
ASG ARG A 171 3 T Turn -110.07 10.73 122.5 3QMC
ASG MET A 172 4 T Turn -133.49 120.89 60.8 3QMC
ASG CYS A 173 5 T Turn -77.68 -19.71 25.4 3QMC
ASG GLY A 174 6 T Turn 66.86 12.02 47.5 3QMC
ASG GLU A 175 7 T Turn -136.18 -0.32 158.4 3QMC
ASG CYS A 176 8 T Turn -100.31 174.90 13.3 3QMC
ASG GLU A 177 9 H AlphaHelix -57.21 -45.18 38.2 3QMC
ASG ALA A 178 10 H AlphaHelix -62.47 -44.54 4.6 3QMC
ASG CYS A 179 11 H AlphaHelix -61.73 -33.07 17.3 3QMC
ASG ARG A 180 12 H AlphaHelix -82.91 -15.31 160.6 3QMC
ASG ARG A 181 13 C Coil -67.61 135.34 117.1 3QMC
ASG THR A 182 14 C Coil -107.17 -22.12 121.3 3QMC
ASG GLU A 183 15 C Coil -101.77 125.48 160.4 3QMC
ASG ASP A 184 16 C Coil -70.46 144.26 33.7 3QMC
ASG CYS A 185 17 T Turn -72.79 -30.15 40.8 3QMC
ASG GLY A 186 18 T Turn 83.89 0.49 16.8 3QMC
ASG HIS A 187 19 T Turn -125.60 -21.89 153.0 3QMC
ASG CYS A 188 20 T Turn -74.23 167.55 21.4 3QMC
ASG ASP A 189 21 H AlphaHelix -56.15 -43.16 61.8 3QMC
ASG PHE A 190 22 H AlphaHelix -63.40 -42.78 9.4 3QMC
ASG CYS A 191 23 H AlphaHelix -65.45 -48.10 0.0 3QMC
ASG ARG A 192 24 H AlphaHelix -59.34 -28.06 147.8 3QMC
ASG ASP A 193 25 H AlphaHelix -67.81 -25.01 10.5 3QMC
ASG MET A 194 26 C Coil -69.95 143.29 30.9 3QMC
ASG LYS A 195 27 G 310Helix -53.50 -39.27 78.0 3QMC
ASG LYS A 196 28 G 310Helix -64.87 -15.47 141.5 3QMC
ASG PHE A 197 29 G 310Helix -115.93 14.62 82.3 3QMC
ASG GLY A 198 30 C Coil 87.59 12.96 73.0 3QMC
ASG GLY A 199 31 C Coil -90.82 172.84 18.8 3QMC
ASG PRO A 200 32 C Coil -82.68 -5.23 107.3 3QMC
ASG ASN A 201 33 T Turn 57.74 47.88 76.7 3QMC
ASG LYS A 202 34 T Turn -101.62 -25.65 73.3 3QMC
ASG ILE A 203 35 T Turn -90.56 -47.77 92.2 3QMC
ASG ARG A 204 36 T Turn 64.44 45.24 169.7 3QMC
ASG GLN A 205 37 C Coil -122.20 158.60 65.7 3QMC
ASG LYS A 206 38 C Coil -63.39 149.05 55.4 3QMC
ASG CYS A 207 39 C Coil -38.95 137.04 0.0 3QMC
ASG ARG A 208 40 G 310Helix -57.43 -32.87 68.2 3QMC
ASG LEU A 209 41 G 310Helix -72.79 -15.85 85.3 3QMC
ASG ARG A 210 42 G 310Helix -103.21 7.31 66.1 3QMC
ASG GLN A 211 43 C Coil -80.83 116.05 12.3 3QMC
ASG CYS A 212 44 T Turn -48.39 127.22 0.0 3QMC
ASG GLN A 213 45 T Turn -66.83 -28.72 112.5 3QMC
ASG LEU A 214 46 T Turn -86.83 -48.91 132.4 3QMC
ASG ARG A 215 47 T Turn -104.80 -18.76 120.5 3QMC
ASG ALA A 216 48 T Turn -68.23 156.15 8.4 3QMC
ASG ARG A 217 49 C Coil -51.80 132.09 135.7 3QMC
ASG GLU A 218 50 G 310Helix -53.25 -42.36 85.9 3QMC
ASG SER A 219 51 G 310Helix -73.82 1.40 90.1 3QMC
ASG TYR A 220 52 G 310Helix -93.26 -21.29 34.3 3QMC
ASG LYS A 221 53 C Coil -74.88 360.00 113.2 3QMC