Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3qmd.std.txt Дата изменения: Thu May 24 22:40:05 2012 Дата индексирования: Tue Oct 2 12:37:41 2012 Кодировка:

REM -------------------------------------------------------------------- 3QMD
REM 3QMD
REM STRIDE: Knowledge-based secondary structure assignment 3QMD
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3QMD
REM 3QMD
REM Residue accessible surface area calculation 3QMD
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3QMD
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3QMD
REM 3QMD
REM ------------------------ General information ----------------------- 3QMD
REM 3QMD
HDR DNA BINDING PROTEIN/DNA 04-FEB-11 3QMD 3QMD
CMP MOL_ID: 1; 3QMD
CMP MOLECULE: CPG-BINDING PROTEIN; 3QMD
CMP CHAIN: A; 3QMD
CMP FRAGMENT: CXXC-TYPE ZN FINGER; 3QMD
CMP SYNONYM: CXXC-TYPE ZINC FINGER PROTEIN 1, PHD FINGER AND CXX 3QMD
CMP CONTAINING PROTEIN 1; 3QMD
CMP ENGINEERED: YES; 3QMD
CMP MOL_ID: 2; 3QMD
CMP MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*AP*TP*GP*GP*C)-3') 3QMD
CMP CHAIN: B; 3QMD
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMD
CMP ENGINEERED: YES; 3QMD
CMP MOL_ID: 3; 3QMD
CMP MOLECULE: DNA (5'-D(*GP*CP*CP*AP*TP*CP*GP*TP*TP*GP*GP*C)-3') 3QMD
CMP CHAIN: C; 3QMD
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMD
CMP ENGINEERED: YES 3QMD
SRC MOL_ID: 1; 3QMD
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3QMD
SRC ORGANISM_COMMON: HUMAN; 3QMD
SRC ORGANISM_TAXID: 9606; 3QMD
SRC GENE: CXXC1; 3QMD
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3QMD
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3QMD
SRC EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; 3QMD
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3QMD
SRC EXPRESSION_SYSTEM_PLASMID: PET28-MHL; 3QMD
SRC MOL_ID: 2; 3QMD
SRC SYNTHETIC: YES; 3QMD
SRC OTHER_DETAILS: DNA WAS PURCHASED FROM INTEGRATED DNA TECHNOL 3QMD
SRC INC.; 3QMD
SRC MOL_ID: 3; 3QMD
SRC SYNTHETIC: YES; 3QMD
SRC OTHER_DETAILS: DNA WAS PURCHASED FROM INTEGRATED DNA TECHNOL 3QMD
SRC INC. 3QMD
AUT R.LAM,C.XU,C.B.BIAN,J.KANIA,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMIT 3QMD
AUT A.M.EDWARDS,A.BOCHKAREV,J.MIN,STRUCTURAL GENOMICS CONSORTIUM 3QMD
REM 3QMD
REM -------------------- Secondary structure summary ------------------- 3QMD
REM 3QMD
CHN /data/npidb/pdb/pdb_new/all/pdb3qmd.pdb A 3QMD
REM 3QMD
REM . . . . . 3QMD
SEQ 1 SARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARE 50 3QMD
STR TTTTTTTTHHHH TTTTHHHHH GGG TTTT GGG TTTTTTT 3QMD
REM 3QMD
REM 3QMD
SEQ 51 SYK 53 3QMD
STR TT 3QMD
REM 3QMD
REM 3QMD
REM 3QMD
LOC AlphaHelix GLU 177 A ARG 180 A 3QMD
LOC AlphaHelix ASP 189 A ASP 193 A 3QMD
LOC 310Helix LYS 195 A PHE 197 A 3QMD
LOC 310Helix ARG 208 A ARG 210 A 3QMD
LOC TurnI SER 169 A MET 172 A 3QMD
LOC TurnIV CYS 173 A CYS 176 A 3QMD
LOC TurnIV CYS 185 A CYS 188 A 3QMD
LOC TurnIV ASN 201 A ARG 204 A 3QMD
LOC TurnIV CYS 212 A ARG 215 A 3QMD
LOC TurnI GLN 213 A ALA 216 A 3QMD
LOC TurnI ARG 217 A TYR 220 A 3QMD
REM 3QMD
REM --------------- Detailed secondary structure assignment------------- 3QMD
REM 3QMD
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3QMD
ASG SER A 169 1 T Turn 360.00 159.37 107.1 3QMD
ASG ALA A 170 2 T Turn -57.41 -35.58 86.8 3QMD
ASG ARG A 171 3 T Turn -106.69 6.68 103.3 3QMD
ASG MET A 172 4 T Turn -129.83 120.92 67.9 3QMD
ASG CYS A 173 5 T Turn -76.76 -21.65 25.0 3QMD
ASG GLY A 174 6 T Turn 70.90 8.22 46.7 3QMD
ASG GLU A 175 7 T Turn -133.78 -2.60 155.7 3QMD
ASG CYS A 176 8 T Turn -97.70 176.37 14.9 3QMD
ASG GLU A 177 9 H AlphaHelix -54.63 -47.78 53.0 3QMD
ASG ALA A 178 10 H AlphaHelix -59.79 -46.73 4.0 3QMD
ASG CYS A 179 11 H AlphaHelix -63.29 -35.14 19.0 3QMD
ASG ARG A 180 12 H AlphaHelix -79.34 -16.03 161.3 3QMD
ASG ARG A 181 13 C Coil -66.27 130.37 86.0 3QMD
ASG THR A 182 14 C Coil -107.15 -12.80 116.7 3QMD
ASG GLU A 183 15 C Coil -111.29 122.05 138.5 3QMD
ASG ASP A 184 16 C Coil -65.47 141.40 35.1 3QMD
ASG CYS A 185 17 T Turn -68.25 -26.57 36.7 3QMD
ASG GLY A 186 18 T Turn 78.54 -2.35 16.0 3QMD
ASG HIS A 187 19 T Turn -121.06 -19.07 151.7 3QMD
ASG CYS A 188 20 T Turn -80.00 173.57 20.8 3QMD
ASG ASP A 189 21 H AlphaHelix -60.46 -42.87 51.3 3QMD
ASG PHE A 190 22 H AlphaHelix -64.10 -40.76 9.4 3QMD
ASG CYS A 191 23 H AlphaHelix -67.12 -45.15 0.0 3QMD
ASG ARG A 192 24 H AlphaHelix -63.21 -24.30 150.7 3QMD
ASG ASP A 193 25 H AlphaHelix -71.44 -24.30 6.1 3QMD
ASG MET A 194 26 C Coil -71.15 142.38 30.3 3QMD
ASG LYS A 195 27 G 310Helix -50.84 -43.86 76.0 3QMD
ASG LYS A 196 28 G 310Helix -66.97 -12.33 142.3 3QMD
ASG PHE A 197 29 G 310Helix -113.55 18.66 85.6 3QMD
ASG GLY A 198 30 C Coil 83.32 11.83 75.2 3QMD
ASG GLY A 199 31 C Coil -89.64 170.77 19.4 3QMD
ASG PRO A 200 32 C Coil -86.68 1.48 108.5 3QMD
ASG ASN A 201 33 T Turn 52.63 45.02 75.3 3QMD
ASG LYS A 202 34 T Turn -98.52 -17.85 77.6 3QMD
ASG ILE A 203 35 T Turn -100.11 -46.46 85.1 3QMD
ASG ARG A 204 36 T Turn 60.91 51.03 175.1 3QMD
ASG GLN A 205 37 C Coil -124.74 156.89 67.4 3QMD
ASG LYS A 206 38 C Coil -61.26 153.92 57.7 3QMD
ASG CYS A 207 39 C Coil -40.78 134.00 0.0 3QMD
ASG ARG A 208 40 G 310Helix -48.61 -39.50 67.5 3QMD
ASG LEU A 209 41 G 310Helix -71.19 -18.52 90.0 3QMD
ASG ARG A 210 42 G 310Helix -102.44 8.13 63.3 3QMD
ASG GLN A 211 43 C Coil -76.67 117.46 11.9 3QMD
ASG CYS A 212 44 T Turn -50.27 124.70 0.0 3QMD
ASG GLN A 213 45 T Turn -63.97 -27.79 110.1 3QMD
ASG LEU A 214 46 T Turn -86.64 -50.50 135.3 3QMD
ASG ARG A 215 47 T Turn -105.30 -16.50 120.1 3QMD
ASG ALA A 216 48 T Turn -65.73 148.41 6.9 3QMD
ASG ARG A 217 49 T Turn -51.05 130.60 134.7 3QMD
ASG GLU A 218 50 T Turn -53.85 -35.73 87.2 3QMD
ASG SER A 219 51 T Turn -69.88 -8.48 89.4 3QMD
ASG TYR A 220 52 T Turn -91.99 -20.72 50.3 3QMD
ASG LYS A 221 53 C Coil -72.87 360.00 111.8 3QMD