Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3qmh.std.txt Дата изменения: Thu May 24 22:41:12 2012 Дата индексирования: Tue Oct 2 12:37:43 2012 Кодировка:

REM -------------------------------------------------------------------- 3QMH
REM 3QMH
REM STRIDE: Knowledge-based secondary structure assignment 3QMH
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3QMH
REM 3QMH
REM Residue accessible surface area calculation 3QMH
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3QMH
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3QMH
REM 3QMH
REM ------------------------ General information ----------------------- 3QMH
REM 3QMH
HDR DNA BINDING PROTEIN/DNA 04-FEB-11 3QMH 3QMH
CMP MOL_ID: 1; 3QMH
CMP MOLECULE: CPG-BINDING PROTEIN; 3QMH
CMP CHAIN: A; 3QMH
CMP FRAGMENT: CXXC-TYPE ZN FINGER, RESIDUES 161-222; 3QMH
CMP SYNONYM: CXXC-TYPE ZINC FINGER PROTEIN 1, PHD FINGER AND CXX 3QMH
CMP CONTAINING PROTEIN 1; 3QMH
CMP ENGINEERED: YES; 3QMH
CMP MOL_ID: 2; 3QMH
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*TP*CP*GP*AP*TP*GP*GP*C)-3'; 3QMH
CMP CHAIN: B, C; 3QMH
CMP ENGINEERED: YES 3QMH
SRC MOL_ID: 1; 3QMH
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3QMH
SRC ORGANISM_COMMON: HUMAN; 3QMH
SRC ORGANISM_TAXID: 9606; 3QMH
SRC GENE: CFP1, CGBP, CXXC1, PCCX1, PHF18; 3QMH
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3QMH
SRC EXPRESSION_SYSTEM_TAXID: 511693; 3QMH
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 3QMH
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3QMH
SRC EXPRESSION_SYSTEM_PLASMID: BL21-V2R-PRARE2; 3QMH
SRC MOL_ID: 2; 3QMH
SRC SYNTHETIC: YES 3QMH
AUT C.XU,C.BIAN,F.MACKENZIE,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, 3QMH
AUT A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) 3QMH
REM 3QMH
REM -------------------- Secondary structure summary ------------------- 3QMH
REM 3QMH
CHN /data/npidb/pdb/pdb_new/all/pdb3qmh.pdb A 3QMH
REM 3QMH
REM . . . . . 3QMH
SEQ 1 ARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARES 50 3QMH
STR TTTTGGGG TTTTHHHHH GGG TTTT TTTTTTTTTT GG 3QMH
REM 3QMH
REM 3QMH
SEQ 51 YKY 53 3QMH
STR G 3QMH
REM 3QMH
REM 3QMH
REM 3QMH
LOC AlphaHelix ASP 185 A ASP 189 A 3QMH
LOC 310Helix GLU 173 A ARG 176 A 3QMH
LOC 310Helix LYS 191 A PHE 193 A 3QMH
LOC 310Helix GLU 214 A TYR 216 A 3QMH
LOC TurnIV CYS 169 A CYS 172 A 3QMH
LOC TurnIV CYS 181 A CYS 184 A 3QMH
LOC TurnIV ASN 197 A ARG 200 A 3QMH
LOC TurnI CYS 203 A ARG 206 A 3QMH
LOC TurnI ARG 204 A GLN 207 A 3QMH
LOC TurnIV CYS 208 A ARG 211 A 3QMH
LOC TurnI GLN 209 A ALA 212 A 3QMH
REM 3QMH
REM --------------- Detailed secondary structure assignment------------- 3QMH
REM 3QMH
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3QMH
ASG ALA A 166 1 C Coil 360.00 -57.01 122.4 3QMH
ASG ARG A 167 2 C Coil -101.14 22.04 127.7 3QMH
ASG MET A 168 3 C Coil -141.57 121.07 89.1 3QMH
ASG CYS A 169 4 T Turn -77.52 -31.12 35.5 3QMH
ASG GLY A 170 5 T Turn 84.29 10.97 50.4 3QMH
ASG GLU A 171 6 T Turn -135.59 -20.69 56.3 3QMH
ASG CYS A 172 7 T Turn -84.18 175.28 20.0 3QMH
ASG GLU A 173 8 G 310Helix -57.27 -44.02 66.8 3QMH
ASG ALA A 174 9 G 310Helix -63.72 -44.15 10.8 3QMH
ASG CYS A 175 10 G 310Helix -65.83 -32.12 15.9 3QMH
ASG ARG A 176 11 G 310Helix -84.09 -16.12 170.7 3QMH
ASG ARG A 177 12 C Coil -74.30 135.34 103.4 3QMH
ASG THR A 178 13 C Coil -109.75 -5.34 120.9 3QMH
ASG GLU A 179 14 C Coil -120.54 128.09 146.4 3QMH
ASG ASP A 180 15 C Coil -73.21 142.19 62.7 3QMH
ASG CYS A 181 16 T Turn -70.70 -28.31 40.5 3QMH
ASG GLY A 182 17 T Turn 77.49 7.64 17.8 3QMH
ASG HIS A 183 18 T Turn -129.46 -22.47 153.9 3QMH
ASG CYS A 184 19 T Turn -76.00 170.96 20.2 3QMH
ASG ASP A 185 20 H AlphaHelix -62.05 -36.86 61.1 3QMH
ASG PHE A 186 21 H AlphaHelix -72.10 -36.73 11.2 3QMH
ASG CYS A 187 22 H AlphaHelix -67.03 -52.45 0.0 3QMH
ASG ARG A 188 23 H AlphaHelix -48.05 -28.11 158.9 3QMH
ASG ASP A 189 24 H AlphaHelix -79.91 -20.26 9.8 3QMH
ASG MET A 190 25 C Coil -73.53 145.07 30.5 3QMH
ASG LYS A 191 26 G 310Helix -58.89 -37.97 75.5 3QMH
ASG LYS A 192 27 G 310Helix -46.83 -26.01 85.2 3QMH
ASG PHE A 193 28 G 310Helix -125.53 16.01 95.2 3QMH
ASG GLY A 194 29 C Coil 96.52 -15.37 71.1 3QMH
ASG GLY A 195 30 C Coil -64.57 172.10 17.3 3QMH
ASG PRO A 196 31 C Coil -86.67 -9.08 110.9 3QMH
ASG ASN A 197 32 T Turn 66.49 51.79 69.5 3QMH
ASG LYS A 198 33 T Turn -112.24 -17.01 70.2 3QMH
ASG ILE A 199 34 T Turn -92.75 -48.39 85.8 3QMH
ASG ARG A 200 35 T Turn 60.26 57.39 174.4 3QMH
ASG GLN A 201 36 C Coil -132.78 157.49 67.9 3QMH
ASG LYS A 202 37 C Coil -52.30 148.39 54.9 3QMH
ASG CYS A 203 38 T Turn -36.31 139.96 0.0 3QMH
ASG ARG A 204 39 T Turn -64.16 -27.98 50.3 3QMH
ASG LEU A 205 40 T Turn -81.02 -2.88 72.6 3QMH
ASG ARG A 206 41 T Turn -108.34 -8.50 59.4 3QMH
ASG GLN A 207 42 T Turn -61.66 122.08 13.8 3QMH
ASG CYS A 208 43 T Turn -52.96 135.92 0.0 3QMH
ASG GLN A 209 44 T Turn -73.40 -20.26 56.1 3QMH
ASG LEU A 210 45 T Turn -96.05 -50.00 129.0 3QMH
ASG ARG A 211 46 T Turn -100.39 -9.39 117.9 3QMH
ASG ALA A 212 47 T Turn -74.69 158.02 9.9 3QMH
ASG ARG A 213 48 C Coil -59.85 127.29 133.7 3QMH
ASG GLU A 214 49 G 310Helix -45.20 -47.28 78.1 3QMH
ASG SER A 215 50 G 310Helix -78.06 2.28 92.4 3QMH
ASG TYR A 216 51 G 310Helix -88.22 -29.84 38.9 3QMH
ASG LYS A 217 52 C Coil -62.38 162.65 79.8 3QMH
ASG TYR A 218 53 C Coil -54.84 360.00 111.4 3QMH