Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3s8q.std.txt Дата изменения: Thu Aug 2 17:26:13 2012 Дата индексирования: Tue Oct 2 12:39:49 2012 Кодировка:

REM -------------------------------------------------------------------- 3S8Q
REM 3S8Q
REM STRIDE: Knowledge-based secondary structure assignment 3S8Q
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3S8Q
REM 3S8Q
REM Residue accessible surface area calculation 3S8Q
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3S8Q
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3S8Q
REM 3S8Q
REM ------------------------ General information ----------------------- 3S8Q
REM 3S8Q
HDR PROTEIN BINDING/DNA 30-MAY-11 3S8Q 3S8Q
CMP MOL_ID: 1; 3S8Q
CMP MOLECULE: R-M CONTROLLER PROTEIN; 3S8Q
CMP CHAIN: A, B; 3S8Q
CMP ENGINEERED: YES; 3S8Q
CMP MOL_ID: 2; 3S8Q
CMP MOLECULE: DNA (5'- 3S8Q
CMP D(*AP*TP*GP*TP*GP*AP*CP*TP*TP*AP*TP*AP*GP*TP*CP*CP*GP*TP*G)- 3S8Q
CMP CHAIN: C; 3S8Q
CMP ENGINEERED: YES; 3S8Q
CMP OTHER_DETAILS: C.ESP1396I; 3S8Q
CMP MOL_ID: 3; 3S8Q
CMP MOLECULE: DNA (5'- 3S8Q
CMP D(*TP*CP*AP*CP*GP*GP*AP*CP*TP*AP*TP*AP*AP*GP*TP*CP*AP*CP*A)- 3S8Q
CMP CHAIN: D; 3S8Q
CMP ENGINEERED: YES; 3S8Q
CMP OTHER_DETAILS: DNA 3S8Q
SRC MOL_ID: 1; 3S8Q
SRC ORGANISM_SCIENTIFIC: ENTEROBACTER SP. RFL1396; 3S8Q
SRC ORGANISM_TAXID: 211595; 3S8Q
SRC GENE: ESP1396IC; 3S8Q
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3S8Q
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3S8Q
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; 3S8Q
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3S8Q
SRC EXPRESSION_SYSTEM_PLASMID: PET23; 3S8Q
SRC MOL_ID: 2; 3S8Q
SRC SYNTHETIC: YES; 3S8Q
SRC MOL_ID: 3; 3S8Q
SRC SYNTHETIC: YES 3S8Q
AUT J.E.MCGEEHAN,N.J.BALL,S.D.STREETER,S.-J.THRESH,G.G.KNEALE 3S8Q
REM 3S8Q
REM -------------------- Secondary structure summary ------------------- 3S8Q
REM 3S8Q
CHN /data/npidb/pdb/pdb_new/all/pdb3s8q.pdb A 3S8Q
REM 3S8Q
REM . . . . . 3S8Q
SEQ 1 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIK 50 3S8Q
STR HHHHHHHHHHHHHHHHH HHHHHHHH HHHHHHHHH BHH 3S8Q
REM 3S8Q
REM . . 3S8Q
SEQ 51 SLELIMKGLEVSDVVFFEMLIKEILK 76 3S8Q
STR HHHHHHHHH HHHHHHHHHHHHH 3S8Q
REM 3S8Q
CHN /data/npidb/pdb/pdb_new/all/pdb3s8q.pdb B 3S8Q
REM 3S8Q
REM . . . . . 3S8Q
SEQ 1 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKS 50 3S8Q
STR HHHHHHHHHHHHHHHHH HHHHHHHH HHHHHHHHHH TTTBHHH 3S8Q
REM 3S8Q
REM . . 3S8Q
SEQ 51 LELIMKGLEVSDVVFFEMLIKEILKHD 77 3S8Q
STR HHHHHHHH HHHHHHHHHHHHH 3S8Q
REM 3S8Q
REM 3S8Q
REM 3S8Q
LOC AlphaHelix PHE 4 A LYS 20 A 3S8Q
LOC AlphaHelix GLN 24 A SER 31 A 3S8Q
LOC AlphaHelix ARG 35 A ARG 43 A 3S8Q
LOC AlphaHelix ILE 50 A LEU 60 A 3S8Q
LOC AlphaHelix ASP 64 A LEU 76 A 3S8Q
LOC AlphaHelix PHE 4 B LYS 20 B 3S8Q
LOC AlphaHelix GLN 24 B SER 31 B 3S8Q
LOC AlphaHelix ARG 35 B ASN 44 B 3S8Q
LOC AlphaHelix ILE 50 B LEU 60 B 3S8Q
LOC AlphaHelix ASP 64 B LEU 76 B 3S8Q
LOC GammaInv ARG 46 B LEU 48 B 3S8Q
REM 3S8Q
REM --------------- Detailed secondary structure assignment------------- 3S8Q
REM 3S8Q
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3S8Q
ASG GLU A 2 1 C Coil 360.00 34.08 238.4 3S8Q
ASG SER A 3 2 C Coil -113.57 127.48 9.0 3S8Q
ASG PHE A 4 3 H AlphaHelix -56.51 -56.67 100.3 3S8Q
ASG LEU A 5 4 H AlphaHelix -55.68 -51.04 0.0 3S8Q
ASG LEU A 6 5 H AlphaHelix -50.44 -44.47 5.8 3S8Q
ASG SER A 7 6 H AlphaHelix -68.15 -28.75 41.7 3S8Q
ASG LYS A 8 7 H AlphaHelix -75.52 -44.78 29.3 3S8Q
ASG VAL A 9 8 H AlphaHelix -60.20 -48.62 0.6 3S8Q
ASG SER A 10 9 H AlphaHelix -62.76 -39.94 2.0 3S8Q
ASG PHE A 11 10 H AlphaHelix -62.84 -42.09 101.0 3S8Q
ASG VAL A 12 11 H AlphaHelix -66.97 -39.96 0.8 3S8Q
ASG ILE A 13 12 H AlphaHelix -60.05 -43.64 1.2 3S8Q
ASG LYS A 14 13 H AlphaHelix -69.46 -35.44 84.0 3S8Q
ASG LYS A 15 14 H AlphaHelix -69.58 -43.50 86.7 3S8Q
ASG ILE A 16 15 H AlphaHelix -67.80 -44.49 2.6 3S8Q
ASG ARG A 17 16 H AlphaHelix -51.98 -50.51 18.0 3S8Q
ASG LEU A 18 17 H AlphaHelix -66.03 -35.99 100.5 3S8Q
ASG GLU A 19 18 H AlphaHelix -60.63 -43.46 122.3 3S8Q
ASG LYS A 20 19 H AlphaHelix -75.53 9.77 110.4 3S8Q
ASG GLY A 21 20 C Coil 51.83 42.17 64.0 3S8Q
ASG MET A 22 21 C Coil -109.88 143.81 28.7 3S8Q
ASG THR A 23 22 C Coil -80.32 161.03 73.0 3S8Q
ASG GLN A 24 23 H AlphaHelix -54.57 -36.20 41.5 3S8Q
ASG GLU A 25 24 H AlphaHelix -63.59 -37.12 124.7 3S8Q
ASG ASP A 26 25 H AlphaHelix -64.77 -45.33 73.6 3S8Q
ASG LEU A 27 26 H AlphaHelix -59.22 -49.71 0.0 3S8Q
ASG ALA A 28 27 H AlphaHelix -47.10 -51.73 11.9 3S8Q
ASG TYR A 29 28 H AlphaHelix -57.38 -48.72 180.2 3S8Q
ASG LYS A 30 29 H AlphaHelix -74.73 -34.31 97.5 3S8Q
ASG SER A 31 30 H AlphaHelix -88.72 -10.69 7.5 3S8Q
ASG ASN A 32 31 C Coil 60.62 30.55 148.1 3S8Q
ASG LEU A 33 32 C Coil -108.52 157.35 32.1 3S8Q
ASG ASP A 34 33 C Coil -74.53 137.17 99.2 3S8Q
ASG ARG A 35 34 H AlphaHelix -62.26 -35.79 114.9 3S8Q
ASG THR A 36 35 H AlphaHelix -69.64 -23.82 69.6 3S8Q
ASG TYR A 37 36 H AlphaHelix -69.20 -45.28 42.5 3S8Q
ASG ILE A 38 37 H AlphaHelix -65.51 -32.24 1.6 3S8Q
ASG SER A 39 38 H AlphaHelix -61.24 -48.83 39.3 3S8Q
ASG GLY A 40 39 H AlphaHelix -55.86 -41.47 9.4 3S8Q
ASG ILE A 41 40 H AlphaHelix -62.77 -45.27 1.3 3S8Q
ASG GLU A 42 41 H AlphaHelix -72.08 -21.55 15.9 3S8Q
ASG ARG A 43 42 H AlphaHelix -94.15 11.52 183.4 3S8Q
ASG ASN A 44 43 C Coil 60.53 36.64 63.9 3S8Q
ASG SER A 45 44 C Coil -122.30 11.84 88.0 3S8Q
ASG ARG A 46 45 C Coil -134.63 109.90 111.4 3S8Q
ASG ASN A 47 46 C Coil -73.41 76.10 60.3 3S8Q
ASG LEU A 48 47 C Coil -68.68 147.85 3.5 3S8Q
ASG THR A 49 48 B Bridge -78.15 167.55 31.9 3S8Q
ASG ILE A 50 49 H AlphaHelix -63.89 -36.92 3.6 3S8Q
ASG LYS A 51 50 H AlphaHelix -54.86 -44.20 103.4 3S8Q
ASG SER A 52 51 H AlphaHelix -68.07 -38.68 22.3 3S8Q
ASG LEU A 53 52 H AlphaHelix -61.20 -44.32 2.6 3S8Q
ASG GLU A 54 53 H AlphaHelix -54.71 -42.51 38.5 3S8Q
ASG LEU A 55 54 H AlphaHelix -65.68 -41.15 78.5 3S8Q
ASG ILE A 56 55 H AlphaHelix -60.58 -48.78 0.8 3S8Q
ASG MET A 57 56 H AlphaHelix -60.33 -39.98 0.8 3S8Q
ASG LYS A 58 57 H AlphaHelix -63.62 -42.92 167.0 3S8Q
ASG GLY A 59 58 H AlphaHelix -61.69 -42.58 0.5 3S8Q
ASG LEU A 60 59 H AlphaHelix -71.22 -8.27 1.0 3S8Q
ASG GLU A 61 60 C Coil 50.34 51.48 131.1 3S8Q
ASG VAL A 62 61 C Coil -122.12 141.60 17.7 3S8Q
ASG SER A 63 62 C Coil -70.02 155.67 66.4 3S8Q
ASG ASP A 64 63 H AlphaHelix -53.35 -46.64 27.6 3S8Q
ASG VAL A 65 64 H AlphaHelix -56.09 -52.28 18.6 3S8Q
ASG VAL A 66 65 H AlphaHelix -57.64 -45.10 58.3 3S8Q
ASG PHE A 67 66 H AlphaHelix -59.85 -48.42 0.0 3S8Q
ASG PHE A 68 67 H AlphaHelix -63.77 -34.31 6.2 3S8Q
ASG GLU A 69 68 H AlphaHelix -68.24 -41.47 76.0 3S8Q
ASG MET A 70 69 H AlphaHelix -66.39 -40.32 38.9 3S8Q
ASG LEU A 71 70 H AlphaHelix -61.22 -44.54 0.6 3S8Q
ASG ILE A 72 71 H AlphaHelix -55.27 -49.36 13.6 3S8Q
ASG LYS A 73 72 H AlphaHelix -60.05 -44.52 145.2 3S8Q
ASG GLU A 74 73 H AlphaHelix -62.70 -40.32 39.8 3S8Q
ASG ILE A 75 74 H AlphaHelix -60.97 -34.48 24.9 3S8Q
ASG LEU A 76 75 H AlphaHelix -79.42 -20.71 124.8 3S8Q
ASG LYS A 77 76 C Coil -69.61 360.00 102.0 3S8Q
ASG SER B 3 1 C Coil 360.00 120.50 82.9 3S8Q
ASG PHE B 4 2 H AlphaHelix -63.80 -54.43 102.2 3S8Q
ASG LEU B 5 3 H AlphaHelix -64.73 -42.92 0.8 3S8Q
ASG LEU B 6 4 H AlphaHelix -55.98 -43.34 5.8 3S8Q
ASG SER B 7 5 H AlphaHelix -65.53 -30.61 53.4 3S8Q
ASG LYS B 8 6 H AlphaHelix -72.32 -45.54 30.7 3S8Q
ASG VAL B 9 7 H AlphaHelix -57.68 -48.37 3.8 3S8Q
ASG SER B 10 8 H AlphaHelix -70.58 -32.84 7.6 3S8Q
ASG PHE B 11 9 H AlphaHelix -58.43 -47.41 101.1 3S8Q
ASG VAL B 12 10 H AlphaHelix -63.01 -40.36 1.8 3S8Q
ASG ILE B 13 11 H AlphaHelix -57.41 -52.17 1.0 3S8Q
ASG LYS B 14 12 H AlphaHelix -66.21 -41.14 92.2 3S8Q
ASG LYS B 15 13 H AlphaHelix -54.48 -54.21 89.8 3S8Q
ASG ILE B 16 14 H AlphaHelix -62.13 -41.02 2.8 3S8Q
ASG ARG B 17 15 H AlphaHelix -58.42 -47.69 20.8 3S8Q
ASG LEU B 18 16 H AlphaHelix -64.47 -38.83 100.7 3S8Q
ASG GLU B 19 17 H AlphaHelix -65.45 -35.62 121.7 3S8Q
ASG LYS B 20 18 H AlphaHelix -80.43 3.76 103.0 3S8Q
ASG GLY B 21 19 C Coil 57.79 30.43 65.9 3S8Q
ASG MET B 22 20 C Coil -92.45 142.55 21.7 3S8Q
ASG THR B 23 21 C Coil -78.36 165.24 74.1 3S8Q
ASG GLN B 24 22 H AlphaHelix -60.39 -32.17 57.1 3S8Q
ASG GLU B 25 23 H AlphaHelix -73.72 -44.84 97.6 3S8Q
ASG ASP B 26 24 H AlphaHelix -48.31 -46.35 76.8 3S8Q
ASG LEU B 27 25 H AlphaHelix -72.34 -42.88 0.0 3S8Q
ASG ALA B 28 26 H AlphaHelix -53.12 -53.90 0.7 3S8Q
ASG TYR B 29 27 H AlphaHelix -56.80 -49.88 185.1 3S8Q
ASG LYS B 30 28 H AlphaHelix -74.65 -16.09 78.4 3S8Q
ASG SER B 31 29 H AlphaHelix -96.18 -5.13 1.2 3S8Q
ASG ASN B 32 30 C Coil 55.50 41.89 140.0 3S8Q
ASG LEU B 33 31 C Coil -130.80 167.19 34.9 3S8Q
ASG ASP B 34 32 C Coil -84.56 145.81 88.5 3S8Q
ASG ARG B 35 33 H AlphaHelix -56.17 -37.91 153.3 3S8Q
ASG THR B 36 34 H AlphaHelix -73.43 -26.12 77.7 3S8Q
ASG TYR B 37 35 H AlphaHelix -70.56 -42.03 53.4 3S8Q
ASG ILE B 38 36 H AlphaHelix -54.80 -47.27 0.8 3S8Q
ASG SER B 39 37 H AlphaHelix -60.20 -45.61 24.1 3S8Q
ASG GLY B 40 38 H AlphaHelix -59.68 -45.62 4.0 3S8Q
ASG ILE B 41 39 H AlphaHelix -57.38 -51.12 1.8 3S8Q
ASG GLU B 42 40 H AlphaHelix -68.84 -38.57 19.0 3S8Q
ASG ARG B 43 41 H AlphaHelix -89.38 -36.99 156.2 3S8Q
ASG ASN B 44 42 H AlphaHelix -115.58 10.71 100.6 3S8Q
ASG SER B 45 43 C Coil 39.05 56.90 32.5 3S8Q
ASG ARG B 46 44 T Turn -54.51 147.48 126.2 3S8Q
ASG ASN B 47 45 T Turn -79.56 80.81 45.2 3S8Q
ASG LEU B 48 46 T Turn -54.98 149.07 1.2 3S8Q
ASG THR B 49 47 B Bridge -85.58 162.20 29.0 3S8Q
ASG ILE B 50 48 H AlphaHelix -52.16 -44.02 4.0 3S8Q
ASG LYS B 51 49 H AlphaHelix -65.00 -39.12 88.3 3S8Q
ASG SER B 52 50 H AlphaHelix -71.40 -33.68 22.0 3S8Q
ASG LEU B 53 51 H AlphaHelix -61.39 -46.12 4.2 3S8Q
ASG GLU B 54 52 H AlphaHelix -56.22 -44.81 40.0 3S8Q
ASG LEU B 55 53 H AlphaHelix -56.19 -45.63 58.3 3S8Q
ASG ILE B 56 54 H AlphaHelix -64.36 -44.90 0.0 3S8Q
ASG MET B 57 55 H AlphaHelix -59.87 -39.13 0.0 3S8Q
ASG LYS B 58 56 H AlphaHelix -63.62 -42.05 150.9 3S8Q
ASG GLY B 59 57 H AlphaHelix -67.26 -34.29 0.6 3S8Q
ASG LEU B 60 58 H AlphaHelix -74.64 -9.81 0.3 3S8Q
ASG GLU B 61 59 C Coil 52.90 46.59 134.0 3S8Q
ASG VAL B 62 60 C Coil -115.58 145.29 23.5 3S8Q
ASG SER B 63 61 C Coil -64.59 157.79 64.6 3S8Q
ASG ASP B 64 62 H AlphaHelix -61.96 -40.28 28.0 3S8Q
ASG VAL B 65 63 H AlphaHelix -61.48 -45.58 20.0 3S8Q
ASG VAL B 66 64 H AlphaHelix -63.55 -44.38 57.3 3S8Q
ASG PHE B 67 65 H AlphaHelix -56.07 -48.51 0.0 3S8Q
ASG PHE B 68 66 H AlphaHelix -68.04 -32.59 2.2 3S8Q
ASG GLU B 69 67 H AlphaHelix -63.87 -38.93 88.5 3S8Q
ASG MET B 70 68 H AlphaHelix -68.23 -40.46 40.2 3S8Q
ASG LEU B 71 69 H AlphaHelix -56.63 -49.72 0.6 3S8Q
ASG ILE B 72 70 H AlphaHelix -55.35 -46.41 17.6 3S8Q
ASG LYS B 73 71 H AlphaHelix -53.77 -46.73 143.2 3S8Q
ASG GLU B 74 72 H AlphaHelix -67.57 -37.94 26.6 3S8Q
ASG ILE B 75 73 H AlphaHelix -63.77 -42.77 24.0 3S8Q
ASG LEU B 76 74 H AlphaHelix -79.65 -6.26 99.9 3S8Q
ASG LYS B 77 75 C Coil -63.17 137.41 125.6 3S8Q
ASG HIS B 78 76 C Coil -144.57 162.79 156.1 3S8Q
ASG ASP B 79 77 C Coil 58.14 360.00 198.1 3S8Q