Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1a1t.std.txt Дата изменения: Mon Oct 1 21:29:13 2012 Дата индексирования: Tue Oct 2 11:43:54 2012 Кодировка:

REM -------------------------------------------------------------------- 1A1T
REM 1A1T
REM STRIDE: Knowledge-based secondary structure assignment 1A1T
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1A1T
REM 1A1T
REM Residue accessible surface area calculation 1A1T
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1A1T
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1A1T
REM 1A1T
REM ------------------------ General information ----------------------- 1A1T
REM 1A1T
HDR VIRAL PROTEIN/RNA 15-DEC-97 1A1T 1A1T
CMP MOL_ID: 1; 1A1T
CMP MOLECULE: SL3 STEM-LOOP RNA; 1A1T
CMP CHAIN: B; 1A1T
CMP ENGINEERED: YES; 1A1T
CMP MOL_ID: 2; 1A1T
CMP MOLECULE: NUCLEOCAPSID PROTEIN; 1A1T
CMP CHAIN: A; 1A1T
CMP ENGINEERED: YES 1A1T
SRC MOL_ID: 1; 1A1T
SRC SYNTHETIC: YES; 1A1T
SRC MOL_ID: 2; 1A1T
SRC ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; 1A1T
SRC ORGANISM_TAXID: 11676; 1A1T
SRC STRAIN: NL4-3; 1A1T
SRC CELL_LINE: BL21; 1A1T
SRC GENE: NC; 1A1T
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1A1T
SRC EXPRESSION_SYSTEM_TAXID: 562; 1A1T
SRC EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSE; 1A1T
SRC EXPRESSION_SYSTEM_VECTOR: PET-3A; 1A1T
SRC EXPRESSION_SYSTEM_PLASMID: PRD2; 1A1T
SRC EXPRESSION_SYSTEM_GENE: NC 1A1T
AUT R.N.DE GUZMAN,Z.R.WU,C.C.STALLING,L.PAPPALARDO,P.N.BORER, 1A1T
AUT M.F.SUMMERS 1A1T
REM 1A1T
REM -------------------- Secondary structure summary ------------------- 1A1T
REM 1A1T
CHN /data/npidb/pdb/pdb_new/all/pdb1a1t.pdb A 1A1T
REM 1A1T
REM . . . . . 1A1T
SEQ 1 MQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCT 50 1A1T
STR TTTGGGGGGGG BTTTTT B GGG BTTTTTTBTT GGGTT 1A1T
REM 1A1T
REM 1A1T
SEQ 51 ERQAN 55 1A1T
STR TT 1A1T
REM 1A1T
REM 1A1T
REM 1A1T
LOC 310Helix GLY 4 A LYS 11 A 1A1T
LOC 310Helix ALA 25 A ASN 27 A 1A1T
LOC 310Helix MET 46 A ASP 48 A 1A1T
LOC TurnIV MET 1 A GLY 4 A 1A1T
LOC TurnIV CYS 15 A CYS 18 A 1A1T
LOC TurnIV PHE 16 A GLY 19 A 1A1T
LOC TurnIV CYS 36 A CYS 39 A 1A1T
LOC TurnIV TRP 37 A GLY 40 A 1A1T
LOC TurnIV LYS 41 A HIS 44 A 1A1T
LOC TurnIV CYS 49 A ARG 52 A 1A1T
REM 1A1T
REM --------------- Detailed secondary structure assignment------------- 1A1T
REM 1A1T
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1A1T
ASG MET A 1 1 T Turn 360.00 -158.61 233.8 1A1T
ASG GLN A 2 2 T Turn 77.18 106.64 176.7 1A1T
ASG LYS A 3 3 T Turn 82.19 68.47 153.2 1A1T
ASG GLY A 4 4 G 310Helix -58.52 -25.05 55.2 1A1T
ASG ASN A 5 5 G 310Helix -57.26 -20.29 112.7 1A1T
ASG PHE A 6 6 G 310Helix -60.99 -15.46 93.5 1A1T
ASG ARG A 7 7 G 310Helix -61.72 -12.47 168.5 1A1T
ASG ASN A 8 8 G 310Helix -57.19 -20.82 35.7 1A1T
ASG GLN A 9 9 G 310Helix -60.94 -13.09 62.1 1A1T
ASG ARG A 10 10 G 310Helix -71.30 -5.05 201.5 1A1T
ASG LYS A 11 11 G 310Helix -126.24 38.06 150.5 1A1T
ASG THR A 12 12 C Coil 35.99 48.17 74.9 1A1T
ASG VAL A 13 13 C Coil -37.99 154.75 22.5 1A1T
ASG LYS A 14 14 B Bridge -104.24 138.37 70.7 1A1T
ASG CYS A 15 15 T Turn -76.64 112.68 0.0 1A1T
ASG PHE A 16 16 T Turn -76.00 4.28 142.0 1A1T
ASG ASN A 17 17 T Turn -97.03 -63.98 12.9 1A1T
ASG CYS A 18 18 T Turn -86.62 -41.34 53.5 1A1T
ASG GLY A 19 19 T Turn 104.72 29.01 26.1 1A1T
ASG LYS A 20 20 C Coil -98.33 -173.39 145.0 1A1T
ASG GLU A 21 21 B Bridge -133.23 121.41 133.1 1A1T
ASG GLY A 22 22 C Coil 137.43 -10.23 33.3 1A1T
ASG HIS A 23 23 C Coil -158.71 156.89 52.3 1A1T
ASG ILE A 24 24 C Coil -106.90 161.96 30.7 1A1T
ASG ALA A 25 25 G 310Helix -49.83 -35.74 20.7 1A1T
ASG LYS A 26 26 G 310Helix -59.93 -44.43 136.4 1A1T
ASG ASN A 27 27 G 310Helix -96.81 12.82 81.0 1A1T
ASG CYS A 28 28 C Coil -85.01 135.30 15.7 1A1T
ASG ARG A 29 29 C Coil -74.66 -32.31 249.5 1A1T
ASG ALA A 30 30 C Coil -59.88 153.99 41.1 1A1T
ASG PRO A 31 31 C Coil -74.94 152.83 94.8 1A1T
ASG ARG A 32 32 C Coil -55.06 106.99 174.4 1A1T
ASG LYS A 33 33 C Coil -134.54 -176.69 134.2 1A1T
ASG LYS A 34 34 C Coil -144.36 51.76 140.0 1A1T
ASG GLY A 35 35 B Bridge -90.70 118.68 21.9 1A1T
ASG CYS A 36 36 T Turn -55.74 120.40 2.6 1A1T
ASG TRP A 37 37 T Turn -83.70 39.46 63.1 1A1T
ASG LYS A 38 38 T Turn -133.83 -49.14 108.7 1A1T
ASG CYS A 39 39 T Turn -109.64 -32.07 46.3 1A1T
ASG GLY A 40 40 T Turn 96.19 22.63 62.0 1A1T
ASG LYS A 41 41 T Turn -94.44 128.35 130.5 1A1T
ASG GLU A 42 42 B Bridge -87.74 113.12 140.6 1A1T
ASG GLY A 43 43 T Turn 149.61 -53.26 56.6 1A1T
ASG HIS A 44 44 T Turn -96.97 179.83 31.3 1A1T
ASG GLN A 45 45 C Coil -129.46 164.57 82.7 1A1T
ASG MET A 46 46 G 310Helix -51.35 -46.03 36.7 1A1T
ASG LYS A 47 47 G 310Helix -54.93 -33.32 183.1 1A1T
ASG ASP A 48 48 G 310Helix -116.82 34.01 116.6 1A1T
ASG CYS A 49 49 T Turn -57.58 110.89 19.2 1A1T
ASG THR A 50 50 T Turn -80.30 4.40 107.7 1A1T
ASG GLU A 51 51 T Turn -96.79 -70.35 104.7 1A1T
ASG ARG A 52 52 T Turn -138.53 171.10 173.7 1A1T
ASG GLN A 53 53 C Coil -54.46 170.85 168.7 1A1T
ASG ALA A 54 54 C Coil -104.34 76.39 38.6 1A1T
ASG ASN A 55 55 C Coil 43.29 360.00 175.1 1A1T