Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1bbx.std.txt Дата изменения: Mon Oct 1 22:23:15 2012 Дата индексирования: Tue Oct 2 11:44:42 2012 Кодировка:

REM -------------------------------------------------------------------- 1BBX
REM 1BBX
REM STRIDE: Knowledge-based secondary structure assignment 1BBX
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1BBX
REM 1BBX
REM Residue accessible surface area calculation 1BBX
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1BBX
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1BBX
REM 1BBX
REM ------------------------ General information ----------------------- 1BBX
REM 1BBX
HDR DNA BINDING PROTEIN/DNA 24-APR-98 1BBX 1BBX
CMP MOL_ID: 1; 1BBX
CMP MOLECULE: DNA (5'-D(*CP*TP*AP*GP*CP*GP*CP*GP*CP*TP*AP*G)- 1BBX
CMP 3'); 1BBX
CMP CHAIN: A, B; 1BBX
CMP ENGINEERED: YES; 1BBX
CMP MOL_ID: 2; 1BBX
CMP MOLECULE: DNA-BINDING PROTEIN 7D; 1BBX
CMP CHAIN: C, D; 1BBX
CMP SYNONYM: SSO7D; 1BBX
CMP ENGINEERED: YES 1BBX
SRC MOL_ID: 1; 1BBX
SRC SYNTHETIC: YES; 1BBX
SRC MOL_ID: 2; 1BBX
SRC ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; 1BBX
SRC ORGANISM_TAXID: 2287; 1BBX
SRC CELL_LINE: BL21; 1BBX
SRC ATCC: DSM 1616; 1BBX
SRC COLLECTION: DSM 1616; 1BBX
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 1BBX
SRC EXPRESSION_SYSTEM_TAXID: 469008; 1BBX
SRC EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); 1BBX
SRC EXPRESSION_SYSTEM_PLASMID: PET15B 1BBX
AUT P.AGBACK,H.BAUMANN,S.KNAPP,R.LADENSTEIN,T.HARD 1BBX
REM 1BBX
REM -------------------- Secondary structure summary ------------------- 1BBX
REM 1BBX
CHN /data/npidb/pdb/pdb_new/all/pdb1bbx.pdb C 1BBX
REM 1BBX
REM . . . . . 1BBX
SEQ 1 ATVKFKYKGEEKQVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDA 50 1BBX
STR EEEEETTEEEEE GGG EE TTTT EEEE TTTTTTTT EETTTTT 1BBX
REM 1BBX
REM . 1BBX
SEQ 51 PKELLQMLEKQKK 63 1BBX
STR TTTHHHHHHH 1BBX
REM 1BBX
CHN /data/npidb/pdb/pdb_new/all/pdb1bbx.pdb D 1BBX
REM 1BBX
REM . . . . . 1BBX
SEQ 1 ATVKFKYKGEEKQVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDA 50 1BBX
STR EEEEETTEEEEE GGG EE TTTT EEEE TTTTTTTT EETTTTT 1BBX
REM 1BBX
REM . 1BBX
SEQ 51 PKELLQMLEKQKK 63 1BBX
STR TTTHHHHHHH 1BBX
REM 1BBX
REM 1BBX
REM 1BBX
LOC AlphaHelix LEU 54 C LYS 60 C 1BBX
LOC AlphaHelix LEU 54 D LYS 60 D 1BBX
LOC 310Helix ILE 16 C LYS 18 C 1BBX
LOC 310Helix ILE 16 D LYS 18 D 1BBX
LOC Strand VAL 3 C TYR 7 C 1BBX
LOC Strand GLU 10 C VAL 14 C 1BBX
LOC Strand LYS 21 C VAL 22 C 1BBX
LOC Strand ILE 29 C THR 32 C 1BBX
LOC Strand ALA 44 C VAL 45 C 1BBX
LOC Strand VAL 3 D TYR 7 D 1BBX
LOC Strand GLU 10 D VAL 14 D 1BBX
LOC Strand LYS 21 D VAL 22 D 1BBX
LOC Strand ILE 29 D THR 32 D 1BBX
LOC Strand ALA 44 D VAL 45 D 1BBX
LOC TurnIV LYS 6 C GLY 9 C 1BBX
LOC TurnIV TYR 7 C GLU 10 C 1BBX
LOC TurnIV ARG 24 C LYS 27 C 1BBX
LOC TurnIV ASP 34 C GLY 37 C 1BBX
LOC TurnIV GLU 35 C GLY 38 C 1BBX
LOC TurnI SER 46 C ASP 49 C 1BBX
LOC TurnI GLU 47 C ALA 50 C 1BBX
LOC TurnIV ALA 50 C GLU 53 C 1BBX
LOC GammaClassic LYS 39 C GLY 41 C 1BBX
LOC TurnIV LYS 6 D GLY 9 D 1BBX
LOC TurnIV TYR 7 D GLU 10 D 1BBX
LOC TurnIV ARG 24 D LYS 27 D 1BBX
LOC TurnIV ASP 34 D GLY 37 D 1BBX
LOC TurnIV GLU 35 D GLY 38 D 1BBX
LOC TurnI SER 46 D ASP 49 D 1BBX
LOC TurnI GLU 47 D ALA 50 D 1BBX
LOC TurnIV ALA 50 D GLU 53 D 1BBX
LOC GammaClassic LYS 39 D GLY 41 D 1BBX
REM 1BBX
REM --------------- Detailed secondary structure assignment------------- 1BBX
REM 1BBX
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1BBX
ASG ALA C 1 1 C Coil 360.00 17.06 72.4 1BBX
ASG THR C 2 2 C Coil -99.63 -32.39 15.1 1BBX
ASG VAL C 3 3 E Strand -149.66 161.82 2.2 1BBX
ASG LYS C 4 4 E Strand -143.60 170.25 82.0 1BBX
ASG PHE C 5 5 E Strand 178.05 -156.75 12.7 1BBX
ASG LYS C 6 6 E Strand -161.48 130.26 140.8 1BBX
ASG TYR C 7 7 E Strand -129.59 137.43 130.1 1BBX
ASG LYS C 8 8 T Turn 66.96 -59.22 204.5 1BBX
ASG GLY C 9 9 T Turn 170.23 35.06 46.4 1BBX
ASG GLU C 10 10 E Strand -143.45 134.64 132.8 1BBX
ASG GLU C 11 11 E Strand -79.67 148.18 146.0 1BBX
ASG LYS C 12 12 E Strand -150.15 149.89 81.6 1BBX
ASG GLN C 13 13 E Strand -149.49 145.60 88.5 1BBX
ASG VAL C 14 14 E Strand -148.65 148.15 10.4 1BBX
ASG ASP C 15 15 C Coil -83.59 172.83 55.8 1BBX
ASG ILE C 16 16 G 310Helix -59.68 -14.06 106.6 1BBX
ASG SER C 17 17 G 310Helix -70.92 1.05 78.1 1BBX
ASG LYS C 18 18 G 310Helix -141.89 7.98 107.3 1BBX
ASG ILE C 19 19 C Coil -105.64 144.73 33.9 1BBX
ASG LYS C 20 20 C Coil -165.33 -53.36 192.6 1BBX
ASG LYS C 21 21 E Strand -88.19 108.58 141.9 1BBX
ASG VAL C 22 22 E Strand -145.00 111.27 34.0 1BBX
ASG TRP C 23 23 C Coil -111.20 -163.89 106.0 1BBX
ASG ARG C 24 24 T Turn -167.46 101.28 109.1 1BBX
ASG VAL C 25 25 T Turn -50.18 -69.17 82.2 1BBX
ASG GLY C 26 26 T Turn -171.03 38.58 34.8 1BBX
ASG LYS C 27 27 T Turn -120.94 -45.95 103.8 1BBX
ASG MET C 28 28 C Coil -174.83 -112.85 33.6 1BBX
ASG ILE C 29 29 E Strand -142.29 85.94 10.2 1BBX
ASG SER C 30 30 E Strand -50.64 97.75 2.6 1BBX
ASG PHE C 31 31 E Strand -102.23 159.49 2.4 1BBX
ASG THR C 32 32 E Strand -122.58 122.40 10.5 1BBX
ASG TYR C 33 33 C Coil -122.94 -44.00 15.7 1BBX
ASG ASP C 34 34 T Turn -176.44 176.42 27.9 1BBX
ASG GLU C 35 35 T Turn -155.39 33.92 113.0 1BBX
ASG GLY C 36 36 T Turn 119.95 -28.01 81.6 1BBX
ASG GLY C 37 37 T Turn -139.00 -56.34 65.6 1BBX
ASG GLY C 38 38 T Turn 162.28 37.60 39.4 1BBX
ASG LYS C 39 39 T Turn -95.37 51.88 146.3 1BBX
ASG THR C 40 40 T Turn 64.01 -70.80 73.4 1BBX
ASG GLY C 41 41 T Turn 63.71 84.12 15.4 1BBX
ASG ARG C 42 42 C Coil -60.47 174.81 120.3 1BBX
ASG GLY C 43 43 C Coil 173.94 152.45 1.3 1BBX
ASG ALA C 44 44 E Strand -96.59 113.31 24.2 1BBX
ASG VAL C 45 45 E Strand -110.88 109.22 0.6 1BBX
ASG SER C 46 46 T Turn -89.15 150.67 21.7 1BBX
ASG GLU C 47 47 T Turn -44.16 -29.82 75.9 1BBX
ASG LYS C 48 48 T Turn -88.70 -11.92 175.7 1BBX
ASG ASP C 49 49 T Turn -77.95 -43.56 61.8 1BBX
ASG ALA C 50 50 T Turn -81.46 157.09 6.3 1BBX
ASG PRO C 51 51 T Turn -73.42 62.38 60.7 1BBX
ASG LYS C 52 52 T Turn 64.85 10.35 156.5 1BBX
ASG GLU C 53 53 T Turn -101.26 22.82 106.1 1BBX
ASG LEU C 54 54 H AlphaHelix -136.98 -53.08 14.0 1BBX
ASG LEU C 55 55 H AlphaHelix -47.26 -24.34 41.4 1BBX
ASG GLN C 56 56 H AlphaHelix -77.74 -23.76 109.7 1BBX
ASG MET C 57 57 H AlphaHelix -67.37 -31.83 93.9 1BBX
ASG LEU C 58 58 H AlphaHelix -88.53 -13.86 26.8 1BBX
ASG GLU C 59 59 H AlphaHelix -66.47 -41.04 96.9 1BBX
ASG LYS C 60 60 H AlphaHelix -91.68 -15.05 183.6 1BBX
ASG GLN C 61 61 C Coil -91.89 -102.40 146.0 1BBX
ASG LYS C 62 62 C Coil -65.72 -12.05 140.6 1BBX
ASG LYS C 63 63 C Coil 60.11 360.00 196.2 1BBX
ASG ALA D 1 1 C Coil 360.00 16.93 73.0 1BBX
ASG THR D 2 2 C Coil -99.50 -32.53 15.4 1BBX
ASG VAL D 3 3 E Strand -149.59 161.80 2.6 1BBX
ASG LYS D 4 4 E Strand -143.54 170.21 80.4 1BBX
ASG PHE D 5 5 E Strand 178.03 -156.85 12.5 1BBX
ASG LYS D 6 6 E Strand -161.38 130.40 140.2 1BBX
ASG TYR D 7 7 E Strand -129.57 137.43 130.2 1BBX
ASG LYS D 8 8 T Turn 66.88 -59.17 205.1 1BBX
ASG GLY D 9 9 T Turn 170.22 35.25 46.5 1BBX
ASG GLU D 10 10 E Strand -143.63 134.61 134.0 1BBX
ASG GLU D 11 11 E Strand -79.61 148.09 146.4 1BBX
ASG LYS D 12 12 E Strand -150.15 149.91 81.8 1BBX
ASG GLN D 13 13 E Strand -149.48 145.55 89.1 1BBX
ASG VAL D 14 14 E Strand -148.65 148.14 10.8 1BBX
ASG ASP D 15 15 C Coil -83.53 172.80 55.0 1BBX
ASG ILE D 16 16 G 310Helix -59.65 -14.14 104.4 1BBX
ASG SER D 17 17 G 310Helix -70.80 1.01 79.0 1BBX
ASG LYS D 18 18 G 310Helix -141.85 8.11 107.0 1BBX
ASG ILE D 19 19 C Coil -105.74 144.84 34.1 1BBX
ASG LYS D 20 20 C Coil -165.46 -53.40 194.5 1BBX
ASG LYS D 21 21 E Strand -88.23 108.58 143.9 1BBX
ASG VAL D 22 22 E Strand -144.99 111.25 33.5 1BBX
ASG TRP D 23 23 C Coil -111.25 -164.06 104.5 1BBX
ASG ARG D 24 24 T Turn -167.38 101.38 107.4 1BBX
ASG VAL D 25 25 T Turn -50.20 -69.21 81.3 1BBX
ASG GLY D 26 26 T Turn -170.98 38.70 35.9 1BBX
ASG LYS D 27 27 T Turn -120.98 -45.82 104.4 1BBX
ASG MET D 28 28 C Coil -174.82 -111.72 33.5 1BBX
ASG ILE D 29 29 E Strand -143.86 85.95 10.4 1BBX
ASG SER D 30 30 E Strand -50.72 97.67 2.6 1BBX
ASG PHE D 31 31 E Strand -102.08 159.41 2.6 1BBX
ASG THR D 32 32 E Strand -122.48 122.30 11.3 1BBX
ASG TYR D 33 33 C Coil -122.80 -44.04 16.2 1BBX
ASG ASP D 34 34 T Turn -176.48 176.43 29.5 1BBX
ASG GLU D 35 35 T Turn -155.44 33.91 111.9 1BBX
ASG GLY D 36 36 T Turn 119.98 -28.09 81.4 1BBX
ASG GLY D 37 37 T Turn -138.82 -56.36 65.6 1BBX
ASG GLY D 38 38 T Turn 162.15 37.76 38.7 1BBX
ASG LYS D 39 39 T Turn -95.50 52.00 144.6 1BBX
ASG THR D 40 40 T Turn 63.92 -70.84 74.4 1BBX
ASG GLY D 41 41 T Turn 63.79 84.05 14.9 1BBX
ASG ARG D 42 42 C Coil -60.45 174.64 120.3 1BBX
ASG GLY D 43 43 C Coil 174.12 152.28 0.6 1BBX
ASG ALA D 44 44 E Strand -96.45 113.08 25.8 1BBX
ASG VAL D 45 45 E Strand -110.57 109.45 0.8 1BBX
ASG SER D 46 46 T Turn -89.35 150.66 22.1 1BBX
ASG GLU D 47 47 T Turn -44.15 -29.86 75.1 1BBX
ASG LYS D 48 48 T Turn -88.68 -11.97 179.0 1BBX
ASG ASP D 49 49 T Turn -77.83 -43.62 64.1 1BBX
ASG ALA D 50 50 T Turn -81.37 157.14 6.5 1BBX
ASG PRO D 51 51 T Turn -73.49 62.42 59.4 1BBX
ASG LYS D 52 52 T Turn 64.84 10.36 155.8 1BBX
ASG GLU D 53 53 T Turn -101.30 22.87 107.8 1BBX
ASG LEU D 54 54 H AlphaHelix -137.02 -53.13 13.6 1BBX
ASG LEU D 55 55 H AlphaHelix -47.21 -24.35 41.4 1BBX
ASG GLN D 56 56 H AlphaHelix -77.75 -23.78 108.1 1BBX
ASG MET D 57 57 H AlphaHelix -67.35 -31.74 96.0 1BBX
ASG LEU D 58 58 H AlphaHelix -88.55 -13.99 26.0 1BBX
ASG GLU D 59 59 H AlphaHelix -66.26 -41.21 96.4 1BBX
ASG LYS D 60 60 H AlphaHelix -91.58 -14.99 182.3 1BBX
ASG GLN D 61 61 C Coil -91.86 -102.55 144.9 1BBX
ASG LYS D 62 62 C Coil -65.65 -12.11 140.1 1BBX
ASG LYS D 63 63 C Coil 60.12 360.00 195.9 1BBX