Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1c8c.std.txt Дата изменения: Mon Oct 1 23:02:09 2012 Дата индексирования: Tue Oct 2 11:45:13 2012 Кодировка:

REM -------------------------------------------------------------------- 1C8C
REM 1C8C
REM STRIDE: Knowledge-based secondary structure assignment 1C8C
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1C8C
REM 1C8C
REM Residue accessible surface area calculation 1C8C
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1C8C
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1C8C
REM 1C8C
REM ------------------------ General information ----------------------- 1C8C
REM 1C8C
HDR DNA BINDING PROTEIN/DNA 04-MAY-00 1C8C 1C8C
CMP MOL_ID: 1; 1C8C
CMP MOLECULE: 5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3'; 1C8C
CMP CHAIN: B, C; 1C8C
CMP ENGINEERED: YES; 1C8C
CMP MOL_ID: 2; 1C8C
CMP MOLECULE: DNA-BINDING PROTEIN 7A; 1C8C
CMP CHAIN: A; 1C8C
CMP SYNONYM: SSO7D, 7 KDA DNA-BINDING PROTEIN D 1C8C
SRC MOL_ID: 1; 1C8C
SRC SYNTHETIC: YES; 1C8C
SRC MOL_ID: 2; 1C8C
SRC ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; 1C8C
SRC ORGANISM_TAXID: 2287; 1C8C
SRC ATCC: DSM 1617; 1C8C
SRC COLLECTION: DSM 1617; 1C8C
SRC OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) 1C8C
SRC 1617, #1616 1C8C
AUT S.SU,Y.-G.GAO,H.ROBINSON,Y.-C.LIAW,S.P.EDMONDSON, 1C8C
AUT J.W.SHRIVER,A.H.-J.WANG 1C8C
REM 1C8C
REM -------------------- Secondary structure summary ------------------- 1C8C
REM 1C8C
CHN /data/npidb/pdb/pdb_new/all/pdb1c8c.pdb A 1C8C
REM 1C8C
REM . . . . . 1C8C
SEQ 1 MATVKFKYKGEEKQVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKD 50 1C8C
STR EEEEETTTTEEEEEGGGEEEEEEETTEEEEEEETTTTTEEEEEEETTT 1C8C
REM 1C8C
REM . 1C8C
SEQ 51 APKELLQMLAKQKK 64 1C8C
STR T HHHHHHHHH 1C8C
REM 1C8C
REM 1C8C
REM 1C8C
LOC AlphaHelix LYS 53 A LYS 61 A 1C8C
LOC 310Helix ILE 17 A LYS 19 A 1C8C
LOC Strand THR 3 A LYS 7 A 1C8C
LOC Strand GLU 12 A ASP 16 A 1C8C
LOC Strand ILE 20 A VAL 26 A 1C8C
LOC Strand MET 29 A ASP 35 A 1C8C
LOC Strand THR 41 A SER 47 A 1C8C
LOC TurnIV LYS 7 A GLY 10 A 1C8C
LOC TurnIV TYR 8 A GLU 11 A 1C8C
LOC TurnII' VAL 26 A MET 29 A 1C8C
LOC TurnII GLU 36 A GLY 39 A 1C8C
LOC TurnI' GLY 37 A LYS 40 A 1C8C
LOC TurnIV SER 47 A ASP 50 A 1C8C
LOC TurnI GLU 48 A ALA 51 A 1C8C
REM 1C8C
REM --------------- Detailed secondary structure assignment------------- 1C8C
REM 1C8C
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1C8C
ASG MET A 1 1 C Coil 360.00 -53.64 197.9 1C8C
ASG ALA A 2 2 C Coil -78.03 172.70 50.7 1C8C
ASG THR A 3 3 E Strand -114.47 162.64 54.7 1C8C
ASG VAL A 4 4 E Strand -120.93 137.21 3.3 1C8C
ASG LYS A 5 5 E Strand -111.20 142.56 140.8 1C8C
ASG PHE A 6 6 E Strand -158.22 161.61 4.8 1C8C
ASG LYS A 7 7 E Strand -111.16 127.26 124.0 1C8C
ASG TYR A 8 8 T Turn -138.03 135.33 72.2 1C8C
ASG LYS A 9 9 T Turn 32.88 57.12 159.0 1C8C
ASG GLY A 10 10 T Turn 72.34 123.42 44.3 1C8C
ASG GLU A 11 11 T Turn 82.56 150.62 153.5 1C8C
ASG GLU A 12 12 E Strand -80.97 139.86 123.3 1C8C
ASG LYS A 13 13 E Strand -122.29 152.18 67.0 1C8C
ASG GLN A 14 14 E Strand -132.54 120.52 119.0 1C8C
ASG VAL A 15 15 E Strand -119.51 139.57 15.0 1C8C
ASG ASP A 16 16 E Strand -66.47 133.42 58.3 1C8C
ASG ILE A 17 17 G 310Helix -66.46 -20.44 0.9 1C8C
ASG SER A 18 18 G 310Helix -59.74 -24.26 77.3 1C8C
ASG LYS A 19 19 G 310Helix -81.09 -10.85 109.4 1C8C
ASG ILE A 20 20 E Strand -66.07 132.61 14.3 1C8C
ASG LYS A 21 21 E Strand -99.83 -46.14 134.7 1C8C
ASG LYS A 22 22 E Strand -140.79 140.91 85.4 1C8C
ASG VAL A 23 23 E Strand -135.96 147.69 0.0 1C8C
ASG TRP A 24 24 E Strand -147.83 162.49 87.4 1C8C
ASG ARG A 25 25 E Strand -106.53 137.08 114.7 1C8C
ASG VAL A 26 26 E Strand -124.63 88.47 73.1 1C8C
ASG GLY A 27 27 T Turn 58.16 -117.60 57.8 1C8C
ASG LYS A 28 28 T Turn -89.40 -1.54 136.4 1C8C
ASG MET A 29 29 E Strand -90.02 134.39 80.7 1C8C
ASG ILE A 30 30 E Strand -105.95 109.28 0.0 1C8C
ASG SER A 31 31 E Strand -105.20 145.97 18.6 1C8C
ASG PHE A 32 32 E Strand -155.13 167.82 0.5 1C8C
ASG THR A 33 33 E Strand -119.56 160.98 21.4 1C8C
ASG TYR A 34 34 E Strand -149.37 152.31 18.2 1C8C
ASG ASP A 35 35 E Strand -80.46 131.61 80.9 1C8C
ASG GLU A 36 36 T Turn -116.77 -176.49 72.2 1C8C
ASG GLY A 37 37 T Turn -64.32 164.88 49.2 1C8C
ASG GLY A 38 38 T Turn 73.55 9.05 82.6 1C8C
ASG GLY A 39 39 T Turn 80.88 11.88 78.8 1C8C
ASG LYS A 40 40 T Turn -94.09 159.31 116.0 1C8C
ASG THR A 41 41 E Strand -119.93 122.15 69.1 1C8C
ASG GLY A 42 42 E Strand -94.58 160.51 5.2 1C8C
ASG ARG A 43 43 E Strand -120.59 148.40 156.9 1C8C
ASG GLY A 44 44 E Strand -163.18 170.52 2.1 1C8C
ASG ALA A 45 45 E Strand -158.27 151.46 32.8 1C8C
ASG VAL A 46 46 E Strand -138.75 159.74 25.3 1C8C
ASG SER A 47 47 E Strand -62.37 143.60 56.6 1C8C
ASG GLU A 48 48 T Turn -62.71 -26.34 59.7 1C8C
ASG LYS A 49 49 T Turn -46.31 -59.69 143.4 1C8C
ASG ASP A 50 50 T Turn -118.63 34.68 155.8 1C8C
ASG ALA A 51 51 T Turn -62.41 143.02 14.8 1C8C
ASG PRO A 52 52 C Coil -63.29 137.97 34.2 1C8C
ASG LYS A 53 53 H AlphaHelix -59.65 -32.62 159.6 1C8C
ASG GLU A 54 54 H AlphaHelix -58.38 -36.85 57.4 1C8C
ASG LEU A 55 55 H AlphaHelix -76.23 -43.26 0.0 1C8C
ASG LEU A 56 56 H AlphaHelix -62.37 -40.13 48.7 1C8C
ASG GLN A 57 57 H AlphaHelix -69.10 -27.96 97.3 1C8C
ASG MET A 58 58 H AlphaHelix -61.26 -40.98 51.0 1C8C
ASG LEU A 59 59 H AlphaHelix -52.78 -50.60 21.1 1C8C
ASG ALA A 60 60 H AlphaHelix -71.12 -18.19 67.8 1C8C
ASG LYS A 61 61 H AlphaHelix -105.95 14.63 168.9 1C8C
ASG GLN A 62 62 C Coil -126.05 128.18 26.6 1C8C
ASG LYS A 63 63 C Coil 161.23 94.89 297.7 1C8C
ASG LYS A 64 64 C Coil -179.43 360.00 360.0 1C8C