Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1ekz.std.txt Дата изменения: Wed May 16 16:44:32 2012 Дата индексирования: Tue Oct 2 11:46:31 2012 Кодировка:

REM -------------------------------------------------------------------- 1EKZ
REM 1EKZ
REM STRIDE: Knowledge-based secondary structure assignment 1EKZ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1EKZ
REM 1EKZ
REM Residue accessible surface area calculation 1EKZ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1EKZ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1EKZ
REM 1EKZ
REM ------------------------ General information ----------------------- 1EKZ
REM 1EKZ
HDR CELL CYCLE/RNA 11-MAR-00 1EKZ 1EKZ
CMP MOL_ID: 1; 1EKZ
CMP MOLECULE: MATERNAL EFFECT PROTEIN (STAUFEN); 1EKZ
CMP CHAIN: A; 1EKZ
CMP SYNONYM: DSRBDIII; 1EKZ
CMP ENGINEERED: YES; 1EKZ
CMP MOL_ID: 2; 1EKZ
CMP MOLECULE: STAUFEN DOUBLE-STRANDED RNA BINDING DOMAIN; 1EKZ
CMP CHAIN: B; 1EKZ
CMP ENGINEERED: YES 1EKZ
SRC MOL_ID: 1; 1EKZ
SRC ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; 1EKZ
SRC ORGANISM_COMMON: FRUIT FLY; 1EKZ
SRC ORGANISM_TAXID: 7227; 1EKZ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1EKZ
SRC EXPRESSION_SYSTEM_TAXID: 562; 1EKZ
SRC MOL_ID: 2; 1EKZ
SRC SYNTHETIC: YES 1EKZ
AUT A.RAMOS,S.GRUNERT,M.BYCROFT,D.ST JOHNSTON,G.VARANI 1EKZ
REM 1EKZ
REM -------------------- Secondary structure summary ------------------- 1EKZ
REM 1EKZ
CHN /data/npidb/pdb/pdb_new/all/pdb1ekz.pdb A 1EKZ
REM 1EKZ
REM . . . . . 1EKZ
SEQ 1 MDEGDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIV 50 1EKZ
STR HHHHHHHHHHHH EEEEEEE TTTT TTEEEEEETTEE 1EKZ
REM 1EKZ
REM . . 1EKZ
SEQ 51 TEGEGNGKKVSKKRAAEKMLVELQKL 76 1EKZ
STR EEETT TTTTTTHHHHHHHHHHHH 1EKZ
REM 1EKZ
REM 1EKZ
REM 1EKZ
LOC AlphaHelix PRO 9 A ARG 20 A 1EKZ
LOC AlphaHelix LYS 63 A GLN 74 A 1EKZ
LOC Strand VAL 24 A ARG 30 A 1EKZ
LOC Strand ILE 41 A VAL 46 A 1EKZ
LOC Strand ILE 49 A GLY 53 A 1EKZ
LOC TurnIV GLY 33 A HIS 36 A 1EKZ
LOC TurnIV ASN 39 A THR 42 A 1EKZ
LOC TurnIV VAL 46 A ILE 49 A 1EKZ
LOC TurnI GLY 57 A VAL 60 A 1EKZ
LOC TurnIV VAL 60 A LYS 63 A 1EKZ
LOC GammaInv GLY 53 A GLY 55 A 1EKZ
REM 1EKZ
REM --------------- Detailed secondary structure assignment------------- 1EKZ
REM 1EKZ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1EKZ
ASG MET A 1 1 C Coil 360.00 98.61 229.5 1EKZ
ASG ASP A 2 2 C Coil -138.89 -163.16 121.5 1EKZ
ASG GLU A 3 3 C Coil -100.00 -61.75 144.3 1EKZ
ASG GLY A 4 4 C Coil 108.49 104.82 65.7 1EKZ
ASG ASP A 5 5 C Coil -103.78 -80.44 86.0 1EKZ
ASG LYS A 6 6 C Coil -161.68 -60.21 204.4 1EKZ
ASG LYS A 7 7 C Coil -174.82 -158.14 100.6 1EKZ
ASG SER A 8 8 C Coil -84.41 133.65 53.2 1EKZ
ASG PRO A 9 9 H AlphaHelix -76.74 -36.57 8.2 1EKZ
ASG ILE A 10 10 H AlphaHelix -46.24 -49.95 34.3 1EKZ
ASG SER A 11 11 H AlphaHelix -56.04 -57.96 54.7 1EKZ
ASG GLN A 12 12 H AlphaHelix -59.13 -36.41 69.4 1EKZ
ASG VAL A 13 13 H AlphaHelix -60.97 -45.40 3.6 1EKZ
ASG HIS A 14 14 H AlphaHelix -66.98 -45.54 73.0 1EKZ
ASG GLU A 15 15 H AlphaHelix -55.14 -50.71 101.2 1EKZ
ASG ILE A 16 16 H AlphaHelix -71.19 -40.07 72.4 1EKZ
ASG GLY A 17 17 H AlphaHelix -56.62 -42.12 3.5 1EKZ
ASG ILE A 18 18 H AlphaHelix -78.43 -48.86 137.3 1EKZ
ASG LYS A 19 19 H AlphaHelix -56.26 -32.15 180.3 1EKZ
ASG ARG A 20 20 H AlphaHelix -98.31 -78.02 113.9 1EKZ
ASG ASN A 21 21 C Coil 161.97 62.04 142.3 1EKZ
ASG MET A 22 22 C Coil -136.99 126.61 31.7 1EKZ
ASG THR A 23 23 C Coil -74.30 101.83 78.2 1EKZ
ASG VAL A 24 24 E Strand -80.85 106.16 7.8 1EKZ
ASG HIS A 25 25 E Strand -130.70 126.57 101.3 1EKZ
ASG PHE A 26 26 E Strand -109.95 141.52 47.1 1EKZ
ASG LYS A 27 27 E Strand -152.81 174.44 165.8 1EKZ
ASG VAL A 28 28 E Strand -125.08 145.65 37.4 1EKZ
ASG LEU A 29 29 E Strand -99.24 -24.63 88.8 1EKZ
ASG ARG A 30 30 E Strand -138.02 153.09 164.7 1EKZ
ASG GLU A 31 31 C Coil 56.27 -150.27 121.1 1EKZ
ASG GLU A 32 32 C Coil 65.52 -160.61 29.3 1EKZ
ASG GLY A 33 33 T Turn 122.30 -148.44 33.6 1EKZ
ASG PRO A 34 34 T Turn -77.40 -87.08 129.0 1EKZ
ASG ALA A 35 35 T Turn -69.83 79.32 92.9 1EKZ
ASG HIS A 36 36 T Turn -157.14 -167.44 105.5 1EKZ
ASG MET A 37 37 C Coil -131.87 91.38 114.6 1EKZ
ASG LYS A 38 38 C Coil -30.03 98.67 86.1 1EKZ
ASG ASN A 39 39 T Turn -166.90 -153.39 14.6 1EKZ
ASG PHE A 40 40 T Turn 68.44 -85.14 65.2 1EKZ
ASG ILE A 41 41 E Strand -125.19 73.86 38.3 1EKZ
ASG THR A 42 42 E Strand -87.07 117.02 3.8 1EKZ
ASG ALA A 43 43 E Strand -108.97 152.00 7.6 1EKZ
ASG CYS A 44 44 E Strand -126.95 134.17 1.0 1EKZ
ASG ILE A 45 45 E Strand -114.08 142.80 80.4 1EKZ
ASG VAL A 46 46 E Strand -137.24 155.20 7.4 1EKZ
ASG GLY A 47 47 T Turn -63.68 63.86 34.9 1EKZ
ASG SER A 48 48 T Turn 174.08 -39.24 89.2 1EKZ
ASG ILE A 49 49 E Strand -160.22 -177.88 71.4 1EKZ
ASG VAL A 50 50 E Strand -127.02 158.20 85.4 1EKZ
ASG THR A 51 51 E Strand -140.63 111.54 9.5 1EKZ
ASG GLU A 52 52 E Strand -85.03 146.25 101.7 1EKZ
ASG GLY A 53 53 E Strand -145.21 95.66 8.5 1EKZ
ASG GLU A 54 54 T Turn -72.92 63.06 131.1 1EKZ
ASG GLY A 55 55 T Turn -70.07 122.32 0.2 1EKZ
ASG ASN A 56 56 C Coil -117.58 71.98 122.6 1EKZ
ASG GLY A 57 57 T Turn 157.32 154.66 30.9 1EKZ
ASG LYS A 58 58 T Turn -56.19 -15.12 192.8 1EKZ
ASG LYS A 59 59 T Turn -98.16 -8.41 82.0 1EKZ
ASG VAL A 60 60 T Turn -126.12 169.39 46.2 1EKZ
ASG SER A 61 61 T Turn 77.57 119.82 5.1 1EKZ
ASG LYS A 62 62 T Turn 83.60 -61.16 94.0 1EKZ
ASG LYS A 63 63 H AlphaHelix -72.58 -57.58 52.2 1EKZ
ASG ARG A 64 64 H AlphaHelix -59.07 -43.76 116.7 1EKZ
ASG ALA A 65 65 H AlphaHelix -63.31 -56.50 0.8 1EKZ
ASG ALA A 66 66 H AlphaHelix -60.62 -40.31 0.0 1EKZ
ASG GLU A 67 67 H AlphaHelix -55.98 -48.12 64.3 1EKZ
ASG LYS A 68 68 H AlphaHelix -58.76 -45.20 94.0 1EKZ
ASG MET A 69 69 H AlphaHelix -57.10 -38.53 2.0 1EKZ
ASG LEU A 70 70 H AlphaHelix -69.81 -56.89 15.8 1EKZ
ASG VAL A 71 71 H AlphaHelix -56.90 -30.85 71.8 1EKZ
ASG GLU A 72 72 H AlphaHelix -84.37 -50.17 66.3 1EKZ
ASG LEU A 73 73 H AlphaHelix -59.62 -29.14 12.5 1EKZ
ASG GLN A 74 74 H AlphaHelix -68.87 -9.94 136.1 1EKZ
ASG LYS A 75 75 C Coil -97.10 -31.51 135.5 1EKZ
ASG LEU A 76 76 C Coil -116.80 360.00 139.7 1EKZ