Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1h2c.std.txt Дата изменения: Wed May 16 18:40:20 2012 Дата индексирования: Tue Oct 2 11:48:05 2012 Кодировка:

REM -------------------------------------------------------------------- 1H2C
REM 1H2C
REM STRIDE: Knowledge-based secondary structure assignment 1H2C
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1H2C
REM 1H2C
REM Residue accessible surface area calculation 1H2C
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1H2C
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1H2C
REM 1H2C
REM ------------------------ General information ----------------------- 1H2C
REM 1H2C
HDR VIRUS/VIRAL PROTEIN 05-AUG-02 1H2C 1H2C
CMP MOL_ID: 1; 1H2C
CMP MOLECULE: MATRIX PROTEIN VP40; 1H2C
CMP CHAIN: A; 1H2C
CMP FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 55-194; 1H2C
CMP ENGINEERED: YES; 1H2C
CMP OTHER_DETAILS: VP40[55-194] VARIANT; 1H2C
CMP MOL_ID: 2; 1H2C
CMP MOLECULE: 5'-R(*UP*GP*AP)-3'; 1H2C
CMP CHAIN: R 1H2C
SRC MOL_ID: 1; 1H2C
SRC ORGANISM_SCIENTIFIC: EBOLA VIRUS; 1H2C
SRC ORGANISM_TAXID: 205488; 1H2C
SRC STRAIN: ZAIRE MAYINGA; 1H2C
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1H2C
SRC EXPRESSION_SYSTEM_TAXID: 562; 1H2C
SRC MOL_ID: 2; 1H2C
SRC ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 1H2C
SRC ORGANISM_TAXID: 562; 1H2C
SRC OTHER_DETAILS: MRNA STOP CODON SEQUENCE, BIOCHEMICAL 1H2C
SRC SYNTHESIS BY THE EXPRESSION HOST AND UPTAKE BY THE 1H2C
SRC PROTEIN DURING OVEREXPRESSION 1H2C
AUT F.X.GOMIS-RUTH,A.DESSEN,A.BRACHER,H.D.KLENK,W.WEISSENHORN 1H2C
REM 1H2C
REM -------------------- Secondary structure summary ------------------- 1H2C
REM 1H2C
CHN /data/npidb/pdb/pdb_new/all/pdb1h2c.pdb A 1H2C
REM 1H2C
REM . . . . . 1H2C
SEQ 1 VSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFDSTTAAIMLA 50 1H2C
STR EEEEEEEEEEEEEETTEEEEEEEEEEEEEEE TTTT HHHHHHHHHH 1H2C
REM 1H2C
REM . . . . . 1H2C
SEQ 51 SYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQL 100 1H2C
STR EEEEEEE TTTTTEEEEEEE TTTT HHHHH EEEEEGGG 1H2C
REM 1H2C
REM . . 1H2C
SEQ 101 PQYFTFDLTALKLITQPLPAATWT 124 1H2C
STR TTTTEEEEEEEEEEEEE TTTT 1H2C
REM 1H2C
REM 1H2C
REM 1H2C
LOC AlphaHelix PHE 108 A LEU 117 A 1H2C
LOC AlphaHelix ARG 148 A ILE 152 A 1H2C
LOC 310Helix GLN 159 A PHE 161 A 1H2C
LOC Strand SER 71 A GLY 84 A 1H2C
LOC Strand VAL 87 A ALA 101 A 1H2C
LOC Strand SER 119 A PHE 125 A 1H2C
LOC Strand LEU 132 A LEU 138 A 1H2C
LOC Strand ASN 154 A LEU 158 A 1H2C
LOC Strand THR 173 A PRO 185 A 1H2C
LOC TurnII GLY 84 A VAL 87 A 1H2C
LOC TurnIV GLN 103 A TYR 106 A 1H2C
LOC TurnI LYS 127 A ASN 130 A 1H2C
LOC TurnIV ALA 128 A PRO 131 A 1H2C
LOC TurnII ILE 142 A HIS 145 A 1H2C
LOC TurnVIII PRO 169 A PHE 172 A 1H2C
LOC TurnVIII PRO 187 A THR 190 A 1H2C
REM 1H2C
REM --------------- Detailed secondary structure assignment------------- 1H2C
REM 1H2C
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1H2C
ASG VAL A 69 1 C Coil 360.00 138.53 128.1 1H2C
ASG SER A 70 2 C Coil -101.28 147.49 43.2 1H2C
ASG SER A 71 3 E Strand -130.40 149.34 10.4 1H2C
ASG ALA A 72 4 E Strand -90.74 147.01 13.2 1H2C
ASG PHE A 73 5 E Strand -123.64 130.46 3.4 1H2C
ASG ILE A 74 6 E Strand -129.13 129.44 13.8 1H2C
ASG LEU A 75 7 E Strand -105.94 121.64 0.0 1H2C
ASG GLU A 76 8 E Strand -103.85 149.89 65.5 1H2C
ASG ALA A 77 9 E Strand -162.61 177.15 4.5 1H2C
ASG MET A 78 10 E Strand -109.06 127.24 45.7 1H2C
ASG VAL A 79 11 E Strand -81.39 124.84 1.6 1H2C
ASG ASN A 80 12 E Strand -91.72 96.35 22.9 1H2C
ASG VAL A 81 13 E Strand -80.42 107.71 12.6 1H2C
ASG ILE A 82 14 E Strand -99.96 146.50 65.2 1H2C
ASG SER A 83 15 E Strand -85.37 -16.75 72.9 1H2C
ASG GLY A 84 16 E Strand 178.86 179.68 25.3 1H2C
ASG PRO A 85 17 T Turn -49.97 127.40 115.2 1H2C
ASG LYS A 86 18 T Turn 64.06 18.10 208.1 1H2C
ASG VAL A 87 19 E Strand -127.81 101.92 69.9 1H2C
ASG LEU A 88 20 E Strand -74.40 130.40 87.4 1H2C
ASG MET A 89 21 E Strand -97.88 -42.88 123.1 1H2C
ASG LYS A 90 22 E Strand -166.53 158.14 98.2 1H2C
ASG GLN A 91 23 E Strand -110.73 141.04 84.5 1H2C
ASG ILE A 92 24 E Strand -128.61 135.48 23.1 1H2C
ASG PRO A 93 25 E Strand -70.39 143.21 80.0 1H2C
ASG ILE A 94 26 E Strand -129.80 150.22 6.2 1H2C
ASG TRP A 95 27 E Strand -121.05 112.64 101.0 1H2C
ASG LEU A 96 28 E Strand -118.69 93.20 0.2 1H2C
ASG PRO A 97 29 E Strand -68.26 128.60 26.8 1H2C
ASG LEU A 98 30 E Strand -98.16 -26.89 6.6 1H2C
ASG GLY A 99 31 E Strand 128.06 -170.19 35.7 1H2C
ASG VAL A 100 32 E Strand -109.62 151.19 82.0 1H2C
ASG ALA A 101 33 E Strand -155.83 148.35 4.2 1H2C
ASG ASP A 102 34 C Coil -114.49 -166.13 42.1 1H2C
ASG GLN A 103 35 T Turn -110.25 24.46 98.8 1H2C
ASG LYS A 104 36 T Turn -72.68 -26.03 181.0 1H2C
ASG THR A 105 37 T Turn -112.33 -47.78 88.8 1H2C
ASG TYR A 106 38 T Turn -127.76 138.94 65.0 1H2C
ASG SER A 107 39 C Coil -67.79 157.06 43.7 1H2C
ASG PHE A 108 40 H AlphaHelix -59.65 -37.81 36.5 1H2C
ASG ASP A 109 41 H AlphaHelix -61.53 -42.05 134.0 1H2C
ASG SER A 110 42 H AlphaHelix -63.35 -43.53 62.3 1H2C
ASG THR A 111 43 H AlphaHelix -63.96 -45.33 0.4 1H2C
ASG THR A 112 44 H AlphaHelix -57.83 -46.57 52.9 1H2C
ASG ALA A 113 45 H AlphaHelix -62.41 -42.54 41.1 1H2C
ASG ALA A 114 46 H AlphaHelix -64.24 -35.09 19.6 1H2C
ASG ILE A 115 47 H AlphaHelix -71.98 -49.81 0.0 1H2C
ASG MET A 116 48 H AlphaHelix -78.17 -24.59 74.0 1H2C
ASG LEU A 117 49 H AlphaHelix -86.33 -16.64 148.4 1H2C
ASG ALA A 118 50 C Coil -81.78 164.03 17.6 1H2C
ASG SER A 119 51 E Strand -105.92 150.22 75.2 1H2C
ASG TYR A 120 52 E Strand -136.30 142.26 6.0 1H2C
ASG THR A 121 53 E Strand -120.70 162.89 40.7 1H2C
ASG ILE A 122 54 E Strand -134.27 135.88 0.6 1H2C
ASG THR A 123 55 E Strand -135.15 152.12 33.9 1H2C
ASG HIS A 124 56 E Strand -91.15 140.72 33.5 1H2C
ASG PHE A 125 57 E Strand -156.29 175.98 73.6 1H2C
ASG GLY A 126 58 C Coil 87.70 -177.04 48.0 1H2C
ASG LYS A 127 59 T Turn -77.19 148.36 136.7 1H2C
ASG ALA A 128 60 T Turn -61.40 -18.99 98.4 1H2C
ASG THR A 129 61 T Turn -86.54 -12.55 129.4 1H2C
ASG ASN A 130 62 T Turn -155.90 63.18 69.0 1H2C
ASG PRO A 131 63 T Turn -61.80 140.48 37.5 1H2C
ASG LEU A 132 64 E Strand -116.90 163.00 38.5 1H2C
ASG VAL A 133 65 E Strand -129.30 143.41 0.0 1H2C
ASG ARG A 134 66 E Strand -115.73 128.96 81.8 1H2C
ASG VAL A 135 67 E Strand -96.32 122.59 0.0 1H2C
ASG ASN A 136 68 E Strand -107.04 121.01 59.6 1H2C
ASG ARG A 137 69 E Strand -88.82 119.37 31.3 1H2C
ASG LEU A 138 70 E Strand -60.93 128.65 131.9 1H2C
ASG GLY A 139 71 C Coil 119.53 -179.34 49.4 1H2C
ASG PRO A 140 72 C Coil -81.87 168.03 109.4 1H2C
ASG GLY A 141 73 C Coil -70.44 156.35 37.4 1H2C
ASG ILE A 142 74 T Turn -105.82 108.48 30.7 1H2C
ASG PRO A 143 75 T Turn -49.14 129.29 87.4 1H2C
ASG ASP A 144 76 T Turn 60.22 19.48 124.1 1H2C
ASG HIS A 145 77 T Turn -71.41 137.35 3.4 1H2C
ASG PRO A 146 78 C Coil -62.92 -24.46 45.5 1H2C
ASG LEU A 147 79 C Coil -94.92 123.62 0.4 1H2C
ASG ARG A 148 80 H AlphaHelix -54.24 -42.29 129.7 1H2C
ASG LEU A 149 81 H AlphaHelix -57.76 -34.18 0.6 1H2C
ASG LEU A 150 82 H AlphaHelix -85.85 -39.42 0.0 1H2C
ASG ARG A 151 83 H AlphaHelix -68.49 -47.68 82.3 1H2C
ASG ILE A 152 84 H AlphaHelix -93.94 -18.08 74.6 1H2C
ASG GLY A 153 85 C Coil 85.09 -0.41 9.5 1H2C
ASG ASN A 154 86 E Strand -157.29 163.43 38.7 1H2C
ASG GLN A 155 87 E Strand -155.53 130.95 24.7 1H2C
ASG ALA A 156 88 E Strand -101.57 149.33 40.3 1H2C
ASG PHE A 157 89 E Strand -145.37 154.40 13.7 1H2C
ASG LEU A 158 90 E Strand -68.92 137.34 55.7 1H2C
ASG GLN A 159 91 G 310Helix -54.85 -41.85 24.1 1H2C
ASG GLU A 160 92 G 310Helix -62.84 -20.45 153.8 1H2C
ASG PHE A 161 93 G 310Helix -79.84 -31.96 111.5 1H2C
ASG VAL A 162 94 C Coil -115.51 -16.18 4.1 1H2C
ASG LEU A 163 95 C Coil -125.46 129.98 9.2 1H2C
ASG PRO A 164 96 C Coil -54.76 150.99 81.9 1H2C
ASG PRO A 165 97 C Coil -47.89 119.43 139.4 1H2C
ASG VAL A 166 98 C Coil -152.90 141.22 38.7 1H2C
ASG GLN A 167 99 C Coil -89.49 108.14 172.3 1H2C
ASG LEU A 168 100 C Coil -102.79 163.87 7.1 1H2C
ASG PRO A 169 101 T Turn -58.66 155.36 61.4 1H2C
ASG GLN A 170 102 T Turn -56.30 -43.49 144.1 1H2C
ASG TYR A 171 103 T Turn -126.25 139.70 178.0 1H2C
ASG PHE A 172 104 T Turn -165.55 158.03 18.6 1H2C
ASG THR A 173 105 E Strand -137.55 124.33 83.3 1H2C
ASG PHE A 174 106 E Strand -129.80 154.10 12.3 1H2C
ASG ASP A 175 107 E Strand -76.07 146.22 99.3 1H2C
ASG LEU A 176 108 E Strand -96.50 139.15 12.4 1H2C
ASG THR A 177 109 E Strand -134.79 177.87 48.5 1H2C
ASG ALA A 178 110 E Strand 53.72 55.65 70.9 1H2C
ASG LEU A 179 111 E Strand -64.54 142.66 41.3 1H2C
ASG LYS A 180 112 E Strand -142.38 118.49 116.4 1H2C
ASG LEU A 181 113 E Strand -99.44 129.55 34.4 1H2C
ASG ILE A 182 114 E Strand -115.94 128.08 46.1 1H2C
ASG THR A 183 115 E Strand -119.28 147.21 70.8 1H2C
ASG GLN A 184 116 E Strand -134.80 106.58 97.9 1H2C
ASG PRO A 185 117 E Strand -58.11 134.22 93.8 1H2C
ASG LEU A 186 118 C Coil -90.06 127.36 68.3 1H2C
ASG PRO A 187 119 T Turn -72.57 154.53 79.4 1H2C
ASG ALA A 188 120 T Turn -61.07 -35.28 115.5 1H2C
ASG ALA A 189 121 T Turn -145.44 142.93 19.0 1H2C
ASG THR A 190 122 T Turn -75.64 -18.25 134.1 1H2C
ASG TRP A 191 123 C Coil -89.12 4.40 215.3 1H2C
ASG THR A 192 124 C Coil -119.25 360.00 124.5 1H2C