Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1pp7.std.txt Дата изменения: Fri May 18 21:21:46 2012 Дата индексирования: Tue Oct 2 11:55:00 2012 Кодировка:

REM -------------------------------------------------------------------- 1PP7
REM 1PP7
REM STRIDE: Knowledge-based secondary structure assignment 1PP7
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1PP7
REM 1PP7
REM Residue accessible surface area calculation 1PP7
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1PP7
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1PP7
REM 1PP7
REM ------------------------ General information ----------------------- 1PP7
REM 1PP7
HDR TRANSCRIPTION/DNA 16-JUN-03 1PP7 1PP7
CMP MOL_ID: 1; 1PP7
CMP MOLECULE: FERREDOXIN INR; 1PP7
CMP CHAIN: E; 1PP7
CMP ENGINEERED: YES; 1PP7
CMP OTHER_DETAILS: DNA SITE; 1PP7
CMP MOL_ID: 2; 1PP7
CMP MOLECULE: FERREDOXIN INR; 1PP7
CMP CHAIN: F; 1PP7
CMP ENGINEERED: YES; 1PP7
CMP MOL_ID: 3; 1PP7
CMP MOLECULE: 39 KDA INITIATOR BINDING PROTEIN; 1PP7
CMP CHAIN: U; 1PP7
CMP FRAGMENT: RESIDUES 1-126; 1PP7
CMP ENGINEERED: YES 1PP7
SRC MOL_ID: 1; 1PP7
SRC SYNTHETIC: YES; 1PP7
SRC MOL_ID: 2; 1PP7
SRC SYNTHETIC: YES; 1PP7
SRC MOL_ID: 3; 1PP7
SRC ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; 1PP7
SRC ORGANISM_TAXID: 5722; 1PP7
SRC GENE: TRICHOMONAS VAGINALIS:IBP39; 1PP7
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 1PP7
SRC EXPRESSION_SYSTEM_TAXID: 469008; 1PP7
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 1PP7
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1PP7
SRC EXPRESSION_SYSTEM_PLASMID: PQE60 1PP7
AUT M.A.SCHUMACHER,A.O.T.LAU,P.J.JOHNSON 1PP7
REM 1PP7
REM -------------------- Secondary structure summary ------------------- 1PP7
REM 1PP7
CHN /data/npidb/pdb/pdb_new/all/pdb1pp7.pdb U 1PP7
REM 1PP7
REM . . . . . 1PP7
SEQ 1 DLEASFTSRLPPEIVAALKRKSSRDPNSRFPRKLHMLLTYLASNPQLEEE 50 1PP7
STR HHHHHHHH HHHHHHHH GGG HHHHHHHHHHHHHTTHHHHHH 1PP7
REM 1PP7
REM . . . . . 1PP7
SEQ 51 IGLSWISDTEFKMKKKNVALVMGIKLNTLNVNLRDLAFEQLQHDKGGWTQ 100 1PP7
STR H EEEEETTEEEE HHHHHHHH HHHHHHHHHHH EEEEEEETTEEE 1PP7
REM 1PP7
REM . 1PP7
SEQ 101 WKRSGFTRNSVFED 114 1PP7
STR EEBTTEETTEE 1PP7
REM 1PP7
REM 1PP7
REM 1PP7
LOC AlphaHelix ASP 5 U SER 12 U 1PP7
LOC AlphaHelix PRO 16 U LYS 23 U 1PP7
LOC AlphaHelix PHE 34 U ALA 46 U 1PP7
LOC AlphaHelix PRO 49 U ILE 55 U 1PP7
LOC AlphaHelix LYS 69 U MET 76 U 1PP7
LOC AlphaHelix LEU 80 U LEU 90 U 1PP7
LOC 310Helix PRO 30 U SER 32 U 1PP7
LOC Strand LEU 57 U SER 61 U 1PP7
LOC Strand GLU 64 U MET 67 U 1PP7
LOC Strand GLU 93 U LYS 99 U 1PP7
LOC Strand TRP 102 U LYS 106 U 1PP7
LOC Strand PHE 110 U THR 111 U 1PP7
LOC Strand SER 114 U VAL 115 U 1PP7
LOC TurnIV ALA 46 U PRO 49 U 1PP7
LOC TurnIV TRP 59 U ASP 62 U 1PP7
LOC TurnI SER 61 U GLU 64 U 1PP7
LOC TurnIV ASP 98 U GLY 101 U 1PP7
LOC TurnI' LYS 99 U TRP 102 U 1PP7
LOC TurnII ARG 107 U PHE 110 U 1PP7
LOC TurnIV THR 111 U SER 114 U 1PP7
REM 1PP7
REM --------------- Detailed secondary structure assignment------------- 1PP7
REM 1PP7
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1PP7
ASG ASP U 5 1 H AlphaHelix 360.00 -31.19 186.2 1PP7
ASG LEU U 6 2 H AlphaHelix -86.75 -50.38 92.7 1PP7
ASG GLU U 7 3 H AlphaHelix -61.57 -34.28 86.9 1PP7
ASG ALA U 8 4 H AlphaHelix -62.84 -37.59 54.9 1PP7
ASG SER U 9 5 H AlphaHelix -77.95 -32.91 33.0 1PP7
ASG PHE U 10 6 H AlphaHelix -68.46 -63.25 2.2 1PP7
ASG THR U 11 7 H AlphaHelix -64.29 -39.91 36.3 1PP7
ASG SER U 12 8 H AlphaHelix -58.54 -20.52 86.8 1PP7
ASG ARG U 13 9 C Coil -99.43 -9.17 70.5 1PP7
ASG LEU U 14 10 C Coil -103.18 151.49 9.8 1PP7
ASG PRO U 15 11 C Coil -49.64 140.80 37.0 1PP7
ASG PRO U 16 12 H AlphaHelix -50.24 -34.97 113.0 1PP7
ASG GLU U 17 13 H AlphaHelix -61.57 -47.27 152.5 1PP7
ASG ILE U 18 14 H AlphaHelix -68.40 -41.65 18.4 1PP7
ASG VAL U 19 15 H AlphaHelix -58.74 -45.42 28.4 1PP7
ASG ALA U 20 16 H AlphaHelix -65.53 -44.26 56.7 1PP7
ASG ALA U 21 17 H AlphaHelix -65.86 -26.88 25.3 1PP7
ASG LEU U 22 18 H AlphaHelix -77.09 -33.53 14.2 1PP7
ASG LYS U 23 19 H AlphaHelix -78.31 -24.49 168.8 1PP7
ASG ARG U 24 20 C Coil -61.83 132.73 107.6 1PP7
ASG LYS U 25 21 C Coil -57.68 145.90 177.5 1PP7
ASG SER U 26 22 C Coil -83.34 113.79 74.9 1PP7
ASG SER U 27 23 C Coil -123.02 -150.79 50.0 1PP7
ASG ARG U 28 24 C Coil -82.21 -15.56 224.6 1PP7
ASG ASP U 29 25 C Coil -64.27 121.16 56.3 1PP7
ASG PRO U 30 26 G 310Helix -61.34 -23.86 59.8 1PP7
ASG ASN U 31 27 G 310Helix -79.13 -16.58 70.5 1PP7
ASG SER U 32 28 G 310Helix -87.34 -9.82 0.2 1PP7
ASG ARG U 33 29 C Coil -80.39 152.74 86.2 1PP7
ASG PHE U 34 30 H AlphaHelix -48.52 -46.70 14.2 1PP7
ASG PRO U 35 31 H AlphaHelix -54.08 -49.33 4.2 1PP7
ASG ARG U 36 32 H AlphaHelix -74.61 -24.12 85.1 1PP7
ASG LYS U 37 33 H AlphaHelix -70.51 -45.95 18.1 1PP7
ASG LEU U 38 34 H AlphaHelix -59.42 -43.39 0.2 1PP7
ASG HIS U 39 35 H AlphaHelix -64.98 -44.44 18.8 1PP7
ASG MET U 40 36 H AlphaHelix -65.15 -30.96 53.8 1PP7
ASG LEU U 41 37 H AlphaHelix -68.27 -50.86 1.0 1PP7
ASG LEU U 42 38 H AlphaHelix -56.57 -50.19 0.6 1PP7
ASG THR U 43 39 H AlphaHelix -57.08 -46.75 72.3 1PP7
ASG TYR U 44 40 H AlphaHelix -73.15 -37.15 47.7 1PP7
ASG LEU U 45 41 H AlphaHelix -63.27 -24.43 0.4 1PP7
ASG ALA U 46 42 H AlphaHelix -54.74 -25.70 59.6 1PP7
ASG SER U 47 43 T Turn -103.82 -7.10 87.2 1PP7
ASG ASN U 48 44 T Turn -122.49 83.18 32.2 1PP7
ASG PRO U 49 45 H AlphaHelix -53.87 -40.00 79.1 1PP7
ASG GLN U 50 46 H AlphaHelix -66.90 -55.03 119.6 1PP7
ASG LEU U 51 47 H AlphaHelix -63.55 -40.27 0.0 1PP7
ASG GLU U 52 48 H AlphaHelix -55.51 -33.70 44.5 1PP7
ASG GLU U 53 49 H AlphaHelix -66.91 -66.03 137.0 1PP7
ASG GLU U 54 50 H AlphaHelix -48.39 -49.27 92.1 1PP7
ASG ILE U 55 51 H AlphaHelix -76.23 -55.01 0.0 1PP7
ASG GLY U 56 52 C Coil 92.67 78.10 0.0 1PP7
ASG LEU U 57 53 E Strand -166.32 99.75 0.0 1PP7
ASG SER U 58 54 E Strand -154.03 151.10 18.8 1PP7
ASG TRP U 59 55 E Strand -73.25 139.64 25.7 1PP7
ASG ILE U 60 56 E Strand -106.78 -14.73 68.2 1PP7
ASG SER U 61 57 E Strand -157.06 -176.30 37.7 1PP7
ASG ASP U 62 58 T Turn -60.90 -21.31 102.8 1PP7
ASG THR U 63 59 T Turn -128.41 1.91 65.2 1PP7
ASG GLU U 64 60 E Strand -130.87 149.40 63.9 1PP7
ASG PHE U 65 61 E Strand -137.43 161.87 0.0 1PP7
ASG LYS U 66 62 E Strand -126.10 157.60 73.2 1PP7
ASG MET U 67 63 E Strand -159.40 164.77 0.0 1PP7
ASG LYS U 68 64 C Coil -109.46 99.78 66.3 1PP7
ASG LYS U 69 65 H AlphaHelix -54.08 -39.95 37.4 1PP7
ASG LYS U 70 66 H AlphaHelix -49.82 -46.03 162.4 1PP7
ASG ASN U 71 67 H AlphaHelix -77.43 -37.83 28.3 1PP7
ASG VAL U 72 68 H AlphaHelix -65.65 -38.20 0.0 1PP7
ASG ALA U 73 69 H AlphaHelix -63.90 -40.47 3.8 1PP7
ASG LEU U 74 70 H AlphaHelix -60.44 -62.09 64.2 1PP7
ASG VAL U 75 71 H AlphaHelix -55.17 -21.64 8.0 1PP7
ASG MET U 76 72 H AlphaHelix -90.86 -13.29 15.2 1PP7
ASG GLY U 77 73 C Coil 77.13 34.06 55.5 1PP7
ASG ILE U 78 74 C Coil -136.02 148.66 43.9 1PP7
ASG LYS U 79 75 C Coil -60.31 155.98 154.4 1PP7
ASG LEU U 80 76 H AlphaHelix -50.25 -48.00 75.0 1PP7
ASG ASN U 81 77 H AlphaHelix -56.61 -41.78 111.6 1PP7
ASG THR U 82 78 H AlphaHelix -74.28 -25.97 43.1 1PP7
ASG LEU U 83 79 H AlphaHelix -60.39 -49.36 0.4 1PP7
ASG ASN U 84 80 H AlphaHelix -59.80 -44.89 57.4 1PP7
ASG VAL U 85 81 H AlphaHelix -58.65 -44.46 59.0 1PP7
ASG ASN U 86 82 H AlphaHelix -63.20 -40.79 44.5 1PP7
ASG LEU U 87 83 H AlphaHelix -62.72 -48.09 1.0 1PP7
ASG ARG U 88 84 H AlphaHelix -54.24 -60.11 195.9 1PP7
ASG ASP U 89 85 H AlphaHelix -69.85 -19.10 111.9 1PP7
ASG LEU U 90 86 H AlphaHelix -99.45 10.20 33.7 1PP7
ASG ALA U 91 87 C Coil 68.38 41.42 71.7 1PP7
ASG PHE U 92 88 C Coil -87.68 140.63 14.1 1PP7
ASG GLU U 93 89 E Strand -116.15 120.90 94.8 1PP7
ASG GLN U 94 90 E Strand -73.95 129.16 87.9 1PP7
ASG LEU U 95 91 E Strand -109.74 0.19 62.8 1PP7
ASG GLN U 96 92 E Strand -161.45 137.47 36.9 1PP7
ASG HIS U 97 93 E Strand -64.64 157.11 156.7 1PP7
ASG ASP U 98 94 E Strand -62.81 130.55 89.0 1PP7
ASG LYS U 99 95 E Strand -140.45 105.88 125.6 1PP7
ASG GLY U 100 96 T Turn 57.98 41.50 65.9 1PP7
ASG GLY U 101 97 T Turn 74.10 1.60 25.6 1PP7
ASG TRP U 102 98 E Strand -99.70 141.13 59.3 1PP7
ASG THR U 103 99 E Strand -135.59 152.73 2.4 1PP7
ASG GLN U 104 100 E Strand -121.02 150.22 46.1 1PP7
ASG TRP U 105 101 E Strand -147.67 164.31 11.4 1PP7
ASG LYS U 106 102 E Strand -155.67 160.85 72.2 1PP7
ASG ARG U 107 103 B Bridge -161.77 134.76 14.2 1PP7
ASG SER U 108 104 T Turn -60.11 130.85 87.5 1PP7
ASG GLY U 109 105 T Turn 76.54 12.48 19.6 1PP7
ASG PHE U 110 106 E Strand -114.04 102.23 0.9 1PP7
ASG THR U 111 107 E Strand -142.38 177.39 23.9 1PP7
ASG ARG U 112 108 T Turn -41.54 -48.62 112.9 1PP7
ASG ASN U 113 109 T Turn -122.49 33.09 141.2 1PP7
ASG SER U 114 110 E Strand -157.35 142.42 25.1 1PP7
ASG VAL U 115 111 E Strand -135.79 104.76 38.4 1PP7
ASG PHE U 116 112 C Coil -91.48 176.42 118.5 1PP7
ASG GLU U 117 113 C Coil 48.98 -131.14 124.7 1PP7
ASG ASP U 118 114 C Coil -135.60 360.00 122.2 1PP7