Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1qrv.std.txt Дата изменения: Fri May 18 22:28:45 2012 Дата индексирования: Tue Oct 2 11:55:57 2012 Кодировка:

REM -------------------------------------------------------------------- 1QRV
REM 1QRV
REM STRIDE: Knowledge-based secondary structure assignment 1QRV
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1QRV
REM 1QRV
REM Residue accessible surface area calculation 1QRV
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1QRV
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1QRV
REM 1QRV
REM ------------------------ General information ----------------------- 1QRV
REM 1QRV
HDR GENE REGULATION/DNA 15-JUN-99 1QRV 1QRV
CMP MOL_ID: 1; 1QRV
CMP MOLECULE: DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3'); 1QRV
CMP CHAIN: C, D; 1QRV
CMP ENGINEERED: YES; 1QRV
CMP MOL_ID: 2; 1QRV
CMP MOLECULE: HIGH MOBILITY GROUP PROTEIN D; 1QRV
CMP CHAIN: A, B; 1QRV
CMP FRAGMENT: RESIDUES 2-74; 1QRV
CMP SYNONYM: HMG-D; 1QRV
CMP ENGINEERED: YES 1QRV
SRC MOL_ID: 1; 1QRV
SRC SYNTHETIC: YES; 1QRV
SRC MOL_ID: 2; 1QRV
SRC ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; 1QRV
SRC ORGANISM_COMMON: FRUIT FLY; 1QRV
SRC ORGANISM_TAXID: 7227; 1QRV
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 1QRV
SRC EXPRESSION_SYSTEM_TAXID: 469008; 1QRV
SRC EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); 1QRV
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1QRV
SRC EXPRESSION_SYSTEM_PLASMID: PET13A 1QRV
AUT F.V.MURPHY IV,R.M.SWEET,M.E.A.CHURCHILL 1QRV
REM 1QRV
REM -------------------- Secondary structure summary ------------------- 1QRV
REM 1QRV
CHN /data/npidb/pdb/pdb_new/all/pdb1qrv.pdb A 1QRV
REM 1QRV
REM . . . . . 1QRV
SEQ 1 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSE 50 1QRV
STR HHHHHHHHHHHHHHHHTTTT HHHHHHHHHHHHHHTTTHHH 1QRV
REM 1QRV
REM . . 1QRV
SEQ 51 WEAKAAKAKDDYDRAVKEFEANG 73 1QRV
STR HHHHHHHHHHHHHHHHHHHH 1QRV
REM 1QRV
CHN /data/npidb/pdb/pdb_new/all/pdb1qrv.pdb B 1QRV
REM 1QRV
REM . . . . . 1QRV
SEQ 1 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEW 50 1QRV
STR HHHHHHHHHHHHHHHHTTTT HHHHHHHHHHHHHHTTTHHHH 1QRV
REM 1QRV
REM . . 1QRV
SEQ 51 EAKAAKAKDDYDRAVKEFEAN 71 1QRV
STR HHHHHHHHHHHHHHHHHHH 1QRV
REM 1QRV
REM 1QRV
REM 1QRV
LOC AlphaHelix ALA 11 A GLU 26 A 1QRV
LOC AlphaHelix VAL 32 A ALA 45 A 1QRV
LOC AlphaHelix LYS 49 A GLU 71 A 1QRV
LOC AlphaHelix ALA 11 B GLU 26 B 1QRV
LOC AlphaHelix VAL 32 B ALA 45 B 1QRV
LOC AlphaHelix LYS 49 B GLU 71 B 1QRV
LOC TurnII ASN 27 A ILE 30 A 1QRV
LOC TurnVIII MET 46 A LYS 49 A 1QRV
LOC TurnII ASN 27 B ILE 30 B 1QRV
LOC TurnVIII MET 46 B LYS 49 B 1QRV
REM 1QRV
REM --------------- Detailed secondary structure assignment------------- 1QRV
REM 1QRV
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1QRV
ASG SER A 2 1 C Coil 360.00 38.54 110.1 1QRV
ASG ASP A 3 2 C Coil -135.42 -21.74 134.3 1QRV
ASG LYS A 4 3 C Coil -63.42 160.72 143.5 1QRV
ASG PRO A 5 4 C Coil -53.79 141.41 29.6 1QRV
ASG LYS A 6 5 C Coil -73.58 141.46 89.4 1QRV
ASG ARG A 7 6 C Coil -58.45 140.19 218.5 1QRV
ASG PRO A 8 7 C Coil -66.09 149.71 46.2 1QRV
ASG LEU A 9 8 C Coil -83.44 142.11 73.5 1QRV
ASG SER A 10 9 C Coil -67.45 171.32 61.8 1QRV
ASG ALA A 11 10 H AlphaHelix -61.43 -41.03 15.2 1QRV
ASG TYR A 12 11 H AlphaHelix -65.10 -43.87 50.6 1QRV
ASG MET A 13 12 H AlphaHelix -68.30 -35.99 71.2 1QRV
ASG LEU A 14 13 H AlphaHelix -65.86 -43.45 41.4 1QRV
ASG TRP A 15 14 H AlphaHelix -63.40 -44.48 21.4 1QRV
ASG LEU A 16 15 H AlphaHelix -64.42 -46.75 3.6 1QRV
ASG ASN A 17 16 H AlphaHelix -55.86 -40.96 82.5 1QRV
ASG SER A 18 17 H AlphaHelix -74.16 -26.81 72.7 1QRV
ASG ALA A 19 18 H AlphaHelix -97.88 -17.15 13.3 1QRV
ASG ARG A 20 19 H AlphaHelix -42.61 -61.67 64.3 1QRV
ASG GLU A 21 20 H AlphaHelix -58.02 -30.34 98.9 1QRV
ASG SER A 22 21 H AlphaHelix -69.49 -52.34 44.0 1QRV
ASG ILE A 23 22 H AlphaHelix -55.54 -39.89 10.3 1QRV
ASG LYS A 24 23 H AlphaHelix -66.49 -37.66 86.9 1QRV
ASG ARG A 25 24 H AlphaHelix -80.47 -18.05 178.7 1QRV
ASG GLU A 26 25 H AlphaHelix -83.09 -9.10 145.5 1QRV
ASG ASN A 27 26 T Turn -144.84 79.40 61.0 1QRV
ASG PRO A 28 27 T Turn -48.70 138.25 120.1 1QRV
ASG GLY A 29 28 T Turn 74.16 -2.94 59.7 1QRV
ASG ILE A 30 29 T Turn -51.84 132.23 23.1 1QRV
ASG LYS A 31 30 C Coil -82.43 161.48 127.1 1QRV
ASG VAL A 32 31 H AlphaHelix -58.77 -35.31 105.8 1QRV
ASG THR A 33 32 H AlphaHelix -69.74 -27.92 106.8 1QRV
ASG GLU A 34 33 H AlphaHelix -81.90 -27.83 89.6 1QRV
ASG VAL A 35 34 H AlphaHelix -68.76 -40.52 0.8 1QRV
ASG ALA A 36 35 H AlphaHelix -65.95 -47.63 45.1 1QRV
ASG LYS A 37 36 H AlphaHelix -55.15 -48.89 140.4 1QRV
ASG ARG A 38 37 H AlphaHelix -63.00 -36.01 97.4 1QRV
ASG GLY A 39 38 H AlphaHelix -63.02 -42.40 0.0 1QRV
ASG GLY A 40 39 H AlphaHelix -60.29 -38.47 13.4 1QRV
ASG GLU A 41 40 H AlphaHelix -63.35 -51.91 62.8 1QRV
ASG LEU A 42 41 H AlphaHelix -61.99 -46.80 49.5 1QRV
ASG TRP A 43 42 H AlphaHelix -59.03 -47.15 36.3 1QRV
ASG ARG A 44 43 H AlphaHelix -61.36 -28.86 178.0 1QRV
ASG ALA A 45 44 H AlphaHelix -92.31 -16.80 79.5 1QRV
ASG MET A 46 45 T Turn -54.16 125.37 49.5 1QRV
ASG LYS A 47 46 T Turn -61.55 -50.43 205.9 1QRV
ASG ASP A 48 47 T Turn -129.29 112.47 97.1 1QRV
ASG LYS A 49 48 H AlphaHelix -93.43 -10.11 61.9 1QRV
ASG SER A 50 49 H AlphaHelix -46.54 -37.98 61.7 1QRV
ASG GLU A 51 50 H AlphaHelix -68.65 -40.62 122.9 1QRV
ASG TRP A 52 51 H AlphaHelix -68.34 -33.57 43.5 1QRV
ASG GLU A 53 52 H AlphaHelix -69.54 -36.67 100.0 1QRV
ASG ALA A 54 53 H AlphaHelix -64.43 -42.24 60.9 1QRV
ASG LYS A 55 54 H AlphaHelix -64.28 -35.44 90.3 1QRV
ASG ALA A 56 55 H AlphaHelix -69.39 -42.62 17.7 1QRV
ASG ALA A 57 56 H AlphaHelix -63.15 -40.47 51.9 1QRV
ASG LYS A 58 57 H AlphaHelix -68.25 -35.08 124.9 1QRV
ASG ALA A 59 58 H AlphaHelix -66.43 -37.61 24.3 1QRV
ASG LYS A 60 59 H AlphaHelix -62.35 -44.56 118.7 1QRV
ASG ASP A 61 60 H AlphaHelix -60.04 -46.52 100.3 1QRV
ASG ASP A 62 61 H AlphaHelix -62.12 -38.17 79.1 1QRV
ASG TYR A 63 62 H AlphaHelix -66.56 -49.16 53.5 1QRV
ASG ASP A 64 63 H AlphaHelix -59.16 -42.29 71.5 1QRV
ASG ARG A 65 64 H AlphaHelix -61.03 -46.47 134.0 1QRV
ASG ALA A 66 65 H AlphaHelix -59.70 -33.30 34.9 1QRV
ASG VAL A 67 66 H AlphaHelix -74.20 -34.04 25.7 1QRV
ASG LYS A 68 67 H AlphaHelix -66.78 -42.87 138.0 1QRV
ASG GLU A 69 68 H AlphaHelix -58.59 -48.07 125.3 1QRV
ASG PHE A 70 69 H AlphaHelix -61.43 -28.59 100.4 1QRV
ASG GLU A 71 70 H AlphaHelix -108.07 8.22 112.0 1QRV
ASG ALA A 72 71 C Coil -61.67 -32.95 70.8 1QRV
ASG ASN A 73 72 C Coil -93.66 0.22 162.8 1QRV
ASG GLY A 74 73 C Coil 73.80 360.00 121.5 1QRV
ASG ASP B 3 1 C Coil 360.00 109.14 165.3 1QRV
ASG LYS B 4 2 C Coil -67.45 134.12 159.9 1QRV
ASG PRO B 5 3 C Coil -55.49 139.28 27.2 1QRV
ASG LYS B 6 4 C Coil -70.03 152.36 197.4 1QRV
ASG ARG B 7 5 C Coil -62.08 153.24 216.9 1QRV
ASG PRO B 8 6 C Coil -71.64 155.80 48.7 1QRV
ASG LEU B 9 7 C Coil -69.26 131.37 83.3 1QRV
ASG SER B 10 8 C Coil -70.49 163.37 56.5 1QRV
ASG ALA B 11 9 H AlphaHelix -63.20 -36.88 17.1 1QRV
ASG TYR B 12 10 H AlphaHelix -61.50 -52.82 65.0 1QRV
ASG MET B 13 11 H AlphaHelix -66.35 -32.28 61.7 1QRV
ASG LEU B 14 12 H AlphaHelix -62.02 -49.29 32.3 1QRV
ASG TRP B 15 13 H AlphaHelix -60.97 -54.36 21.8 1QRV
ASG LEU B 16 14 H AlphaHelix -48.50 -45.03 11.4 1QRV
ASG ASN B 17 15 H AlphaHelix -55.62 -45.47 71.8 1QRV
ASG SER B 18 16 H AlphaHelix -72.07 -24.05 71.8 1QRV
ASG ALA B 19 17 H AlphaHelix -101.98 -2.01 11.9 1QRV
ASG ARG B 20 18 H AlphaHelix -58.83 -43.03 78.8 1QRV
ASG GLU B 21 19 H AlphaHelix -65.89 -44.95 163.4 1QRV
ASG SER B 22 20 H AlphaHelix -53.93 -50.23 57.4 1QRV
ASG ILE B 23 21 H AlphaHelix -59.09 -39.04 0.8 1QRV
ASG LYS B 24 22 H AlphaHelix -72.43 -31.15 102.1 1QRV
ASG ARG B 25 23 H AlphaHelix -65.71 -47.18 192.6 1QRV
ASG GLU B 26 24 H AlphaHelix -73.63 -7.71 97.1 1QRV
ASG ASN B 27 25 T Turn -137.28 73.09 44.4 1QRV
ASG PRO B 28 26 T Turn -51.36 135.61 117.4 1QRV
ASG GLY B 29 27 T Turn 70.54 3.57 78.6 1QRV
ASG ILE B 30 28 T Turn -55.75 138.37 36.5 1QRV
ASG LYS B 31 29 C Coil -78.97 146.01 136.2 1QRV
ASG VAL B 32 30 H AlphaHelix -45.22 -42.78 127.9 1QRV
ASG THR B 33 31 H AlphaHelix -64.08 -41.85 102.4 1QRV
ASG GLU B 34 32 H AlphaHelix -73.60 -29.53 98.2 1QRV
ASG VAL B 35 33 H AlphaHelix -63.74 -42.84 10.2 1QRV
ASG ALA B 36 34 H AlphaHelix -61.46 -42.38 46.5 1QRV
ASG LYS B 37 35 H AlphaHelix -67.53 -40.72 128.1 1QRV
ASG ARG B 38 36 H AlphaHelix -67.75 -46.83 61.9 1QRV
ASG GLY B 39 37 H AlphaHelix -53.42 -36.38 0.0 1QRV
ASG GLY B 40 38 H AlphaHelix -70.15 -32.82 26.1 1QRV
ASG GLU B 41 39 H AlphaHelix -66.64 -45.43 68.5 1QRV
ASG LEU B 42 40 H AlphaHelix -66.38 -41.54 51.5 1QRV
ASG TRP B 43 41 H AlphaHelix -63.38 -45.90 46.5 1QRV
ASG ARG B 44 42 H AlphaHelix -66.05 -27.66 177.3 1QRV
ASG ALA B 45 43 H AlphaHelix -78.40 -37.54 54.0 1QRV
ASG MET B 46 44 T Turn -60.54 104.40 42.2 1QRV
ASG LYS B 47 45 T Turn -73.87 -39.77 178.0 1QRV
ASG ASP B 48 46 T Turn -99.90 97.85 113.8 1QRV
ASG LYS B 49 47 H AlphaHelix -102.73 18.36 39.9 1QRV
ASG SER B 50 48 H AlphaHelix -51.57 -46.32 59.3 1QRV
ASG GLU B 51 49 H AlphaHelix -58.06 -44.88 99.2 1QRV
ASG TRP B 52 50 H AlphaHelix -75.63 -32.76 27.7 1QRV
ASG GLU B 53 51 H AlphaHelix -70.05 -33.93 108.4 1QRV
ASG ALA B 54 52 H AlphaHelix -68.13 -46.52 42.9 1QRV
ASG LYS B 55 53 H AlphaHelix -65.78 -43.65 89.4 1QRV
ASG ALA B 56 54 H AlphaHelix -61.09 -31.28 19.2 1QRV
ASG ALA B 57 55 H AlphaHelix -63.13 -48.01 49.8 1QRV
ASG LYS B 58 56 H AlphaHelix -68.18 -42.91 126.5 1QRV
ASG ALA B 59 57 H AlphaHelix -57.27 -30.38 21.9 1QRV
ASG LYS B 60 58 H AlphaHelix -69.94 -48.05 94.4 1QRV
ASG ASP B 61 59 H AlphaHelix -55.27 -47.93 77.5 1QRV
ASG ASP B 62 60 H AlphaHelix -57.85 -46.63 86.7 1QRV
ASG TYR B 63 61 H AlphaHelix -57.82 -46.50 52.3 1QRV
ASG ASP B 64 62 H AlphaHelix -56.84 -42.64 72.8 1QRV
ASG ARG B 65 63 H AlphaHelix -66.56 -35.14 132.4 1QRV
ASG ALA B 66 64 H AlphaHelix -71.14 -28.63 43.3 1QRV
ASG VAL B 67 65 H AlphaHelix -70.80 -44.16 30.1 1QRV
ASG LYS B 68 66 H AlphaHelix -57.63 -47.91 130.8 1QRV
ASG GLU B 69 67 H AlphaHelix -67.43 -29.61 118.4 1QRV
ASG PHE B 70 68 H AlphaHelix -77.36 -34.69 89.3 1QRV
ASG GLU B 71 69 H AlphaHelix -76.59 -42.90 150.6 1QRV
ASG ALA B 72 70 C Coil -108.68 93.18 71.4 1QRV
ASG ASN B 73 71 C Coil 72.83 360.00 152.4 1QRV