Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1r4o.std.txt Дата изменения: Mon Mar 3 19:54:19 2014 Дата индексирования: Sun Apr 10 16:59:16 2016 Кодировка:

REM -------------------------------------------------------------------- 1R4O
REM 1R4O
REM STRIDE: Knowledge-based secondary structure assignment 1R4O
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1R4O
REM 1R4O
REM Residue accessible surface area calculation 1R4O
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1R4O
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1R4O
REM 1R4O
REM ------------------------ General information ----------------------- 1R4O
REM 1R4O
HDR TRANSCRIPTION/DNA 07-OCT-03 1R4O 1R4O
CMP MOL_ID: 1; 1R4O
CMP MOLECULE: 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP 1R4O
CMP *G)-3'; 1R4O
CMP CHAIN: C, D; 1R4O
CMP ENGINEERED: YES; 1R4O
CMP MOL_ID: 2; 1R4O
CMP MOLECULE: GLUCOCORTICOID RECEPTOR; 1R4O
CMP CHAIN: A, B; 1R4O
CMP FRAGMENT: DNA BINDING DOMAIN; 1R4O
CMP SYNONYM: GR; 1R4O
CMP ENGINEERED: YES 1R4O
SRC MOL_ID: 1; 1R4O
SRC SYNTHETIC: YES; 1R4O
SRC OTHER_DETAILS: GLUCOCORTICOID RESPONSE ELEMENT WITH 4 BP OF 1R4O
SRC BETWEEN HALF-SITES; 1R4O
SRC MOL_ID: 2; 1R4O
SRC ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; 1R4O
SRC ORGANISM_COMMON: NORWAY RAT; 1R4O
SRC ORGANISM_TAXID: 10116; 1R4O
SRC GENE: NR3C1 OR GRL; 1R4O
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1R4O
SRC EXPRESSION_SYSTEM_TAXID: 562; 1R4O
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1R4O
SRC EXPRESSION_SYSTEM_PLASMID: PT7440-525 1R4O
AUT B.F.LUISI,W.X.XU,Z.OTWINOWSKI,L.P.FREEDMAN,K.R.YAMAMOTO,P.B.S 1R4O
REM 1R4O
REM -------------------- Secondary structure summary ------------------- 1R4O
REM 1R4O
CHN /data/npidb/pdb/pdb_new/all/pdb1r4o.pdb A 1R4O
REM 1R4O
REM . . . . . 1R4O
SEQ 1 MKPARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCI 50 1R4O
STR BTTTTT B EEETTEEE HHHHHHHHHHHH TTTT 1R4O
REM 1R4O
REM . . . 1R4O
SEQ 51 IDKIRRKNCPACRYRKCLQAGMNLEARKTK 80 1R4O
STR TTTTTTTTHHHHHHHHHHH TTTT 1R4O
REM 1R4O
CHN /data/npidb/pdb/pdb_new/all/pdb1r4o.pdb B 1R4O
REM 1R4O
REM . . . . . 1R4O
SEQ 1 MKPARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCI 50 1R4O
STR BTTTTT B EEETTEEE HHHHHHHHHHHH TTTT 1R4O
REM 1R4O
REM . . . 1R4O
SEQ 51 IDKIRRKNCPACRYRKCLQAGMNLEARKTK 80 1R4O
STR TTTTTTTTHHHHHHHHHHH TTTTTTT 1R4O
REM 1R4O
REM 1R4O
REM 1R4O
LOC AlphaHelix GLY 458 A GLU 469 A 1R4O
LOC AlphaHelix PRO 493 A ALA 503 A 1R4O
LOC AlphaHelix GLY 458 B GLU 469 B 1R4O
LOC AlphaHelix PRO 493 B ALA 503 B 1R4O
LOC Strand GLY 449 A HIS 451 A 1R4O
LOC Strand VAL 454 A THR 456 A 1R4O
LOC Strand GLY 449 B HIS 451 B 1R4O
LOC Strand VAL 454 B THR 456 B 1R4O
LOC TurnI CYS 440 A CYS 443 A 1R4O
LOC TurnIV LEU 441 A SER 444 A 1R4O
LOC TurnII CYS 450 A GLY 453 A 1R4O
LOC TurnI' HIS 451 A VAL 454 A 1R4O
LOC TurnIV CYS 476 A ARG 479 A 1R4O
LOC TurnI ASP 485 A ARG 488 A 1R4O
LOC TurnIV LYS 486 A ARG 489 A 1R4O
LOC TurnIV ILE 487 A LYS 490 A 1R4O
LOC TurnI ARG 488 A ASN 491 A 1R4O
LOC TurnIV ARG 489 A CYS 492 A 1R4O
LOC TurnVIII LYS 490 A PRO 493 A 1R4O
LOC TurnIV ASN 506 A ALA 509 A 1R4O
LOC TurnIV CYS 440 B CYS 443 B 1R4O
LOC TurnI LEU 441 B SER 444 B 1R4O
LOC TurnIV CYS 450 B GLY 453 B 1R4O
LOC TurnI' HIS 451 B VAL 454 B 1R4O
LOC TurnIV CYS 476 B ARG 479 B 1R4O
LOC TurnIV ASP 485 B ARG 488 B 1R4O
LOC TurnI LYS 486 B ARG 489 B 1R4O
LOC TurnI ILE 487 B LYS 490 B 1R4O
LOC TurnI ARG 488 B ASN 491 B 1R4O
LOC TurnIV ARG 489 B CYS 492 B 1R4O
LOC TurnVIII LYS 490 B PRO 493 B 1R4O
LOC TurnIV ASN 506 B ALA 509 B 1R4O
LOC TurnIV GLU 508 B LYS 511 B 1R4O
LOC TurnIV ALA 509 B THR 512 B 1R4O
REM 1R4O
REM --------------- Detailed secondary structure assignment------------- 1R4O
REM 1R4O
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1R4O
ASG MET A 434 1 C Coil 360.00 134.43 239.6 1R4O
ASG LYS A 435 2 C Coil -172.55 138.84 168.8 1R4O
ASG PRO A 436 3 C Coil -65.18 112.76 107.2 1R4O
ASG ALA A 437 4 C Coil -130.25 120.37 55.2 1R4O
ASG ARG A 438 5 C Coil 143.42 -38.63 178.3 1R4O
ASG PRO A 439 6 B Bridge -120.63 152.20 41.1 1R4O
ASG CYS A 440 7 T Turn -49.27 135.02 5.2 1R4O
ASG LEU A 441 8 T Turn -78.73 -13.63 78.0 1R4O
ASG VAL A 442 9 T Turn -105.49 -18.27 0.0 1R4O
ASG CYS A 443 10 T Turn -152.33 6.98 0.2 1R4O
ASG SER A 444 11 T Turn 58.21 23.30 83.1 1R4O
ASG ASP A 445 12 C Coil -92.56 152.58 36.4 1R4O
ASG GLU A 446 13 B Bridge -53.75 117.91 139.7 1R4O
ASG ALA A 447 14 C Coil -55.86 161.22 23.5 1R4O
ASG SER A 448 15 C Coil -124.08 9.62 74.8 1R4O
ASG GLY A 449 16 E Strand 136.57 -178.77 32.1 1R4O
ASG CYS A 450 17 E Strand -92.19 86.27 94.3 1R4O
ASG HIS A 451 18 E Strand -88.65 132.38 45.2 1R4O
ASG TYR A 452 19 T Turn 41.36 29.84 45.1 1R4O
ASG GLY A 453 20 T Turn 118.38 -14.66 44.5 1R4O
ASG VAL A 454 21 E Strand -141.70 151.40 8.0 1R4O
ASG LEU A 455 22 E Strand -57.76 133.11 44.0 1R4O
ASG THR A 456 23 E Strand -161.44 -178.06 0.0 1R4O
ASG CYS A 457 24 C Coil -107.97 174.32 2.4 1R4O
ASG GLY A 458 25 H AlphaHelix -51.32 -49.29 42.9 1R4O
ASG SER A 459 26 H AlphaHelix -66.20 -57.48 34.9 1R4O
ASG CYS A 460 27 H AlphaHelix -58.94 -31.93 0.0 1R4O
ASG LYS A 461 28 H AlphaHelix -55.11 -65.36 72.0 1R4O
ASG VAL A 462 29 H AlphaHelix -55.31 -51.48 52.3 1R4O
ASG PHE A 463 30 H AlphaHelix -47.50 -51.47 21.3 1R4O
ASG PHE A 464 31 H AlphaHelix -54.19 -56.33 4.6 1R4O
ASG LYS A 465 32 H AlphaHelix -53.16 -46.17 70.2 1R4O
ASG ARG A 466 33 H AlphaHelix -61.95 -33.38 167.9 1R4O
ASG ALA A 467 34 H AlphaHelix -63.22 -65.85 7.7 1R4O
ASG VAL A 468 35 H AlphaHelix -52.61 -48.62 55.7 1R4O
ASG GLU A 469 36 H AlphaHelix -78.25 -49.57 113.6 1R4O
ASG GLY A 470 37 C Coil -72.95 156.00 35.5 1R4O
ASG GLN A 471 38 C Coil -98.43 132.93 185.6 1R4O
ASG HIS A 472 39 C Coil -135.76 -165.93 102.5 1R4O
ASG ASN A 473 40 C Coil -145.70 92.94 113.6 1R4O
ASG TYR A 474 41 C Coil -118.16 118.92 69.4 1R4O
ASG LEU A 475 42 C Coil -132.65 118.21 75.5 1R4O
ASG CYS A 476 43 T Turn -58.98 145.96 16.4 1R4O
ASG ALA A 477 44 T Turn -108.35 -0.14 4.7 1R4O
ASG GLY A 478 45 T Turn -114.75 -112.50 30.3 1R4O
ASG ARG A 479 46 T Turn -128.90 13.13 126.8 1R4O
ASG ASN A 480 47 C Coil 81.26 38.24 100.7 1R4O
ASG ASP A 481 48 C Coil -156.30 42.03 61.6 1R4O
ASG CYS A 482 49 C Coil -73.07 157.35 19.5 1R4O
ASG ILE A 483 50 C Coil -75.78 107.16 75.5 1R4O
ASG ILE A 484 51 C Coil -97.15 121.78 4.4 1R4O
ASG ASP A 485 52 T Turn -149.19 -175.93 33.1 1R4O
ASG LYS A 486 53 T Turn -52.12 -25.00 112.6 1R4O
ASG ILE A 487 54 T Turn -116.44 -26.18 105.8 1R4O
ASG ARG A 488 55 T Turn -93.49 14.95 43.1 1R4O
ASG ARG A 489 56 T Turn -86.25 -24.66 41.5 1R4O
ASG LYS A 490 57 T Turn -79.04 -20.38 183.7 1R4O
ASG ASN A 491 58 T Turn -69.87 -49.95 29.3 1R4O
ASG CYS A 492 59 T Turn -126.40 98.08 4.2 1R4O
ASG PRO A 493 60 H AlphaHelix -72.05 -28.93 26.3 1R4O
ASG ALA A 494 61 H AlphaHelix -60.35 -31.99 21.0 1R4O
ASG CYS A 495 62 H AlphaHelix -87.31 -26.54 0.2 1R4O
ASG ARG A 496 63 H AlphaHelix -69.00 -55.68 19.4 1R4O
ASG TYR A 497 64 H AlphaHelix -41.40 -76.23 70.8 1R4O
ASG ARG A 498 65 H AlphaHelix -36.82 -32.31 89.4 1R4O
ASG LYS A 499 66 H AlphaHelix -78.63 -36.95 53.7 1R4O
ASG CYS A 500 67 H AlphaHelix -53.75 -63.88 0.0 1R4O
ASG LEU A 501 68 H AlphaHelix -59.66 -44.50 87.7 1R4O
ASG GLN A 502 69 H AlphaHelix -56.32 -42.91 144.1 1R4O
ASG ALA A 503 70 H AlphaHelix -75.30 1.58 30.4 1R4O
ASG GLY A 504 71 C Coil 103.82 -21.51 42.4 1R4O
ASG MET A 505 72 C Coil -49.89 138.18 9.5 1R4O
ASG ASN A 506 73 T Turn -147.31 137.33 100.9 1R4O
ASG LEU A 507 74 T Turn -73.05 -63.27 56.7 1R4O
ASG GLU A 508 75 T Turn -75.10 71.50 164.9 1R4O
ASG ALA A 509 76 T Turn -138.95 132.79 31.9 1R4O
ASG ARG A 510 77 C Coil -85.81 -171.87 201.3 1R4O
ASG LYS A 511 78 C Coil -121.01 -170.61 183.8 1R4O
ASG THR A 512 79 C Coil 88.09 123.53 144.0 1R4O
ASG LYS A 513 80 C Coil -82.13 360.00 246.2 1R4O
ASG MET B 434 1 C Coil 360.00 120.22 245.1 1R4O
ASG LYS B 435 2 C Coil -75.45 148.82 138.7 1R4O
ASG PRO B 436 3 C Coil -76.80 134.88 112.3 1R4O
ASG ALA B 437 4 C Coil -68.23 143.49 74.6 1R4O
ASG ARG B 438 5 C Coil -114.48 97.43 124.2 1R4O
ASG PRO B 439 6 B Bridge -91.94 127.09 66.1 1R4O
ASG CYS B 440 7 T Turn -49.69 123.93 2.8 1R4O
ASG LEU B 441 8 T Turn -64.99 -18.29 107.0 1R4O
ASG VAL B 442 9 T Turn -88.83 -55.26 2.3 1R4O
ASG CYS B 443 10 T Turn -106.38 -0.99 0.0 1R4O
ASG SER B 444 11 T Turn 76.52 -9.59 87.6 1R4O
ASG ASP B 445 12 C Coil -77.68 168.54 50.1 1R4O
ASG GLU B 446 13 B Bridge -60.12 114.29 48.9 1R4O
ASG ALA B 447 14 C Coil -67.22 161.50 4.5 1R4O
ASG SER B 448 15 C Coil -127.49 12.82 61.2 1R4O
ASG GLY B 449 16 E Strand 137.25 172.02 14.0 1R4O
ASG CYS B 450 17 E Strand -71.08 127.65 57.6 1R4O
ASG HIS B 451 18 E Strand -127.41 126.51 40.0 1R4O
ASG TYR B 452 19 T Turn 46.68 37.39 44.8 1R4O
ASG GLY B 453 20 T Turn 103.64 0.84 15.1 1R4O
ASG VAL B 454 21 E Strand -146.04 151.90 9.4 1R4O
ASG LEU B 455 22 E Strand -60.17 126.38 58.5 1R4O
ASG THR B 456 23 E Strand -158.38 154.69 0.0 1R4O
ASG CYS B 457 24 C Coil -69.48 -177.00 3.6 1R4O
ASG GLY B 458 25 H AlphaHelix -82.25 -17.24 36.6 1R4O
ASG SER B 459 26 H AlphaHelix -77.77 -36.94 38.3 1R4O
ASG CYS B 460 27 H AlphaHelix -70.95 -38.90 0.0 1R4O
ASG LYS B 461 28 H AlphaHelix -51.76 -58.41 71.0 1R4O
ASG VAL B 462 29 H AlphaHelix -75.92 -20.50 68.8 1R4O
ASG PHE B 463 30 H AlphaHelix -65.58 -64.98 27.0 1R4O
ASG PHE B 464 31 H AlphaHelix -50.07 -52.01 2.2 1R4O
ASG LYS B 465 32 H AlphaHelix -49.62 -50.63 59.1 1R4O
ASG ARG B 466 33 H AlphaHelix -61.23 -46.52 195.5 1R4O
ASG ALA B 467 34 H AlphaHelix -54.50 -58.99 3.9 1R4O
ASG VAL B 468 35 H AlphaHelix -63.62 -40.77 40.9 1R4O
ASG GLU B 469 36 H AlphaHelix -60.82 -32.87 127.7 1R4O
ASG GLY B 470 37 C Coil -130.86 -145.36 40.7 1R4O
ASG GLN B 471 38 C Coil -87.17 95.77 170.9 1R4O
ASG HIS B 472 39 C Coil -87.98 36.96 67.4 1R4O
ASG ASN B 473 40 C Coil -84.15 58.43 125.8 1R4O
ASG TYR B 474 41 C Coil -99.27 164.31 75.5 1R4O
ASG LEU B 475 42 C Coil -126.27 147.07 85.9 1R4O
ASG CYS B 476 43 T Turn -78.37 137.75 9.1 1R4O
ASG ALA B 477 44 T Turn -85.39 -5.01 5.1 1R4O
ASG GLY B 478 45 T Turn -118.27 -131.41 18.6 1R4O
ASG ARG B 479 46 T Turn -108.21 31.24 137.4 1R4O
ASG ASN B 480 47 C Coil 64.99 28.63 100.1 1R4O
ASG ASP B 481 48 C Coil -154.04 63.67 78.7 1R4O
ASG CYS B 482 49 C Coil -95.95 148.07 24.6 1R4O
ASG ILE B 483 50 C Coil -65.61 162.47 96.3 1R4O
ASG ILE B 484 51 C Coil -140.46 162.00 18.4 1R4O
ASG ASP B 485 52 T Turn 167.34 164.51 41.9 1R4O
ASG LYS B 486 53 T Turn -46.92 -33.87 140.2 1R4O
ASG ILE B 487 54 T Turn -85.34 -48.49 77.1 1R4O
ASG ARG B 488 55 T Turn -77.72 8.64 44.4 1R4O
ASG ARG B 489 56 T Turn -72.68 -16.82 33.9 1R4O
ASG LYS B 490 57 T Turn -78.83 -39.60 142.2 1R4O
ASG ASN B 491 58 T Turn -44.47 -62.41 19.7 1R4O
ASG CYS B 492 59 T Turn -116.52 94.50 9.3 1R4O
ASG PRO B 493 60 H AlphaHelix -49.18 -39.55 32.9 1R4O
ASG ALA B 494 61 H AlphaHelix -60.55 -51.83 2.3 1R4O
ASG CYS B 495 62 H AlphaHelix -69.31 -35.09 13.3 1R4O
ASG ARG B 496 63 H AlphaHelix -69.69 -39.77 22.6 1R4O
ASG TYR B 497 64 H AlphaHelix -65.76 -38.75 30.5 1R4O
ASG ARG B 498 65 H AlphaHelix -67.44 -33.15 122.6 1R4O
ASG LYS B 499 66 H AlphaHelix -70.69 -21.30 73.7 1R4O
ASG CYS B 500 67 H AlphaHelix -81.38 -51.81 0.0 1R4O
ASG LEU B 501 68 H AlphaHelix -55.40 -78.06 79.9 1R4O
ASG GLN B 502 69 H AlphaHelix -37.95 -34.12 159.3 1R4O
ASG ALA B 503 70 H AlphaHelix -88.75 8.06 28.6 1R4O
ASG GLY B 504 71 C Coil 82.73 10.28 40.5 1R4O
ASG MET B 505 72 C Coil -57.98 139.30 9.2 1R4O
ASG ASN B 506 73 T Turn -154.92 140.43 86.6 1R4O
ASG LEU B 507 74 T Turn -63.05 -51.55 58.7 1R4O
ASG GLU B 508 75 T Turn -96.20 70.04 127.8 1R4O
ASG ALA B 509 76 T Turn -149.88 145.71 16.1 1R4O
ASG ARG B 510 77 T Turn 65.61 23.68 167.2 1R4O
ASG LYS B 511 78 T Turn -151.14 -156.19 123.8 1R4O
ASG THR B 512 79 T Turn -49.80 177.04 78.3 1R4O
ASG LYS B 513 80 C Coil -150.96 360.00 239.4 1R4O