Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1vfc.std.txt Дата изменения: Sat May 19 01:45:37 2012 Дата индексирования: Tue Oct 2 12:00:17 2012 Кодировка:

REM -------------------------------------------------------------------- 1VFC
REM 1VFC
REM STRIDE: Knowledge-based secondary structure assignment 1VFC
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1VFC
REM 1VFC
REM Residue accessible surface area calculation 1VFC
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1VFC
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1VFC
REM 1VFC
REM ------------------------ General information ----------------------- 1VFC
REM 1VFC
HDR STRUCTURAL PROTEIN/DNA 12-APR-04 1VFC 1VFC
CMP MOL_ID: 1; 1VFC
CMP MOLECULE: TELOMERIC REPEAT BINDING FACTOR 2; 1VFC
CMP CHAIN: A; 1VFC
CMP FRAGMENT: DNA BINDING DOMAIN; 1VFC
CMP SYNONYM: TRF2, TTAGGG REPEAT BINDING FACTOR 2, TELOMERIC 1VFC
CMP DNA BINDING PROTEIN; 1VFC
CMP ENGINEERED: YES; 1VFC
CMP MOL_ID: 2; 1VFC
CMP MOLECULE: SHORT G-RICH STRAND; 1VFC
CMP CHAIN: B; 1VFC
CMP ENGINEERED: YES; 1VFC
CMP MOL_ID: 3; 1VFC
CMP MOLECULE: SHORT C-RICH STARND; 1VFC
CMP CHAIN: C; 1VFC
CMP ENGINEERED: YES 1VFC
SRC MOL_ID: 1; 1VFC
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1VFC
SRC ORGANISM_COMMON: HUMAN; 1VFC
SRC ORGANISM_TAXID: 9606; 1VFC
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1VFC
SRC EXPRESSION_SYSTEM_TAXID: 562; 1VFC
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1VFC
SRC EXPRESSION_SYSTEM_PLASMID: PET23B; 1VFC
SRC MOL_ID: 2; 1VFC
SRC SYNTHETIC: YES; 1VFC
SRC OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.; 1VFC
SRC MOL_ID: 3; 1VFC
SRC SYNTHETIC: YES; 1VFC
SRC OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. 1VFC
AUT Y.NISHIMURA,S.HANAOKA 1VFC
REM 1VFC
REM -------------------- Secondary structure summary ------------------- 1VFC
REM 1VFC
CHN /data/npidb/pdb/pdb_new/all/pdb1vfc.pdb A 1VFC
REM 1VFC
REM . . . . . 1VFC
SEQ 1 EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 50 1VFC
STR TTTT HHHHHHHHHHHHHHTTTTHHHHHTTTTTTTT HHHH 1VFC
REM 1VFC
REM . 1VFC
SEQ 51 KDRWRTMKRLGMN 63 1VFC
STR HHHHHHHHH 1VFC
REM 1VFC
REM 1VFC
REM 1VFC
LOC AlphaHelix VAL 452 A TYR 465 A 1VFC
LOC AlphaHelix TRP 470 A SER 474 A 1VFC
LOC AlphaHelix ALA 484 A ARG 496 A 1VFC
LOC TurnIV SER 440 A ASN 443 A 1VFC
LOC TurnII GLY 466 A ASN 469 A 1VFC
LOC TurnIV SER 474 A TYR 477 A 1VFC
LOC TurnIV PHE 479 A ARG 482 A 1VFC
LOC GammaInv TYR 477 A PHE 479 A 1VFC
REM 1VFC
REM --------------- Detailed secondary structure assignment------------- 1VFC
REM 1VFC
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1VFC
ASG GLU A 438 1 C Coil 360.00 134.23 233.8 1VFC
ASG ASP A 439 2 C Coil 59.82 108.77 160.2 1VFC
ASG SER A 440 3 T Turn -130.49 152.18 87.9 1VFC
ASG THR A 441 4 T Turn -141.38 -77.32 138.0 1VFC
ASG THR A 442 5 T Turn -86.61 -28.06 121.7 1VFC
ASG ASN A 443 6 T Turn 62.68 109.90 118.3 1VFC
ASG ILE A 444 7 C Coil -137.14 89.35 156.2 1VFC
ASG THR A 445 8 C Coil -158.26 83.22 127.6 1VFC
ASG LYS A 446 9 C Coil -116.84 -67.61 211.1 1VFC
ASG LYS A 447 10 C Coil -149.38 134.95 189.9 1VFC
ASG GLN A 448 11 C Coil -121.24 88.94 166.8 1VFC
ASG LYS A 449 12 C Coil -74.38 144.87 176.3 1VFC
ASG TRP A 450 13 C Coil -60.30 169.68 39.2 1VFC
ASG THR A 451 14 C Coil -109.98 174.85 86.5 1VFC
ASG VAL A 452 15 H AlphaHelix -73.24 -18.57 128.8 1VFC
ASG GLU A 453 16 H AlphaHelix -76.93 -47.17 114.3 1VFC
ASG GLU A 454 17 H AlphaHelix -64.29 -38.25 6.4 1VFC
ASG SER A 455 18 H AlphaHelix -69.78 -24.50 34.3 1VFC
ASG GLU A 456 19 H AlphaHelix -77.79 -37.65 113.6 1VFC
ASG TRP A 457 20 H AlphaHelix -66.86 -35.75 23.7 1VFC
ASG VAL A 458 21 H AlphaHelix -76.80 -33.29 1.6 1VFC
ASG LYS A 459 22 H AlphaHelix -65.56 -41.09 122.7 1VFC
ASG ALA A 460 23 H AlphaHelix -82.32 -30.11 30.4 1VFC
ASG GLY A 461 24 H AlphaHelix -61.65 -45.44 0.0 1VFC
ASG VAL A 462 25 H AlphaHelix -78.60 -30.50 22.0 1VFC
ASG GLN A 463 26 H AlphaHelix -71.10 -20.04 147.6 1VFC
ASG LYS A 464 27 H AlphaHelix -109.61 -49.93 183.8 1VFC
ASG TYR A 465 28 H AlphaHelix -88.24 -43.34 135.4 1VFC
ASG GLY A 466 29 T Turn 119.85 -177.92 20.3 1VFC
ASG GLU A 467 30 T Turn -89.88 149.62 89.5 1VFC
ASG GLY A 468 31 T Turn 92.48 -16.62 49.3 1VFC
ASG ASN A 469 32 T Turn -102.65 69.92 92.3 1VFC
ASG TRP A 470 33 H AlphaHelix -86.39 -32.93 14.2 1VFC
ASG ALA A 471 34 H AlphaHelix -48.78 -55.90 75.4 1VFC
ASG ALA A 472 35 H AlphaHelix -62.10 -42.88 37.5 1VFC
ASG ILE A 473 36 H AlphaHelix -56.53 -50.31 0.2 1VFC
ASG SER A 474 37 H AlphaHelix -72.27 -9.05 43.7 1VFC
ASG LYS A 475 38 T Turn -99.02 -11.74 184.6 1VFC
ASG ASN A 476 39 T Turn -121.19 -10.10 129.1 1VFC
ASG TYR A 477 40 T Turn -105.87 162.16 65.1 1VFC
ASG PRO A 478 41 T Turn -73.52 51.58 78.8 1VFC
ASG PHE A 479 42 T Turn -82.51 150.27 27.5 1VFC
ASG VAL A 480 43 T Turn -122.89 -69.39 122.6 1VFC
ASG ASN A 481 44 T Turn -118.98 56.54 129.2 1VFC
ASG ARG A 482 45 T Turn -136.44 92.31 50.8 1VFC
ASG THR A 483 46 C Coil -73.06 172.26 92.1 1VFC
ASG ALA A 484 47 H AlphaHelix -64.11 -24.90 45.7 1VFC
ASG VAL A 485 48 H AlphaHelix -71.71 -36.84 102.5 1VFC
ASG MET A 486 49 H AlphaHelix -72.91 -42.59 96.6 1VFC
ASG ILE A 487 50 H AlphaHelix -63.90 -31.47 0.0 1VFC
ASG LYS A 488 51 H AlphaHelix -75.92 -28.20 80.6 1VFC
ASG ASP A 489 52 H AlphaHelix -75.39 -29.05 100.4 1VFC
ASG ARG A 490 53 H AlphaHelix -72.59 -54.63 64.7 1VFC
ASG TRP A 491 54 H AlphaHelix -57.63 -37.75 43.6 1VFC
ASG ARG A 492 55 H AlphaHelix -66.71 -47.36 141.2 1VFC
ASG THR A 493 56 H AlphaHelix -58.55 -29.15 95.0 1VFC
ASG MET A 494 57 H AlphaHelix -78.77 -46.86 69.8 1VFC
ASG LYS A 495 58 H AlphaHelix -74.43 -21.47 117.4 1VFC
ASG ARG A 496 59 H AlphaHelix -74.56 -51.01 174.2 1VFC
ASG LEU A 497 60 C Coil -132.97 85.48 156.6 1VFC
ASG GLY A 498 61 C Coil 162.46 -68.12 63.6 1VFC
ASG MET A 499 62 C Coil -79.99 -1.61 125.1 1VFC
ASG ASN A 500 63 C Coil -115.69 360.00 171.2 1VFC