Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1ysa.std.txt Дата изменения: Sat May 19 06:52:55 2012 Дата индексирования: Tue Oct 2 12:02:15 2012 Кодировка:

REM -------------------------------------------------------------------- 1YSA
REM 1YSA
REM STRIDE: Knowledge-based secondary structure assignment 1YSA
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1YSA
REM 1YSA
REM Residue accessible surface area calculation 1YSA
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1YSA
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1YSA
REM 1YSA
REM ------------------------ General information ----------------------- 1YSA
REM 1YSA
HDR TRANSCRIPTION/DNA 09-AUG-93 1YSA 1YSA
CMP MOL_ID: 1; 1YSA
CMP MOLECULE: DNA (5'- 1YSA
CMP D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A 1YSA
CMP P*GP*TP*T)-3'); 1YSA
CMP CHAIN: A; 1YSA
CMP ENGINEERED: YES; 1YSA
CMP MOL_ID: 2; 1YSA
CMP MOLECULE: DNA (5'- 1YSA
CMP D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A 1YSA
CMP P*GP*GP*A)-3'); 1YSA
CMP CHAIN: B; 1YSA
CMP ENGINEERED: YES; 1YSA
CMP MOL_ID: 3; 1YSA
CMP MOLECULE: PROTEIN (GCN4); 1YSA
CMP CHAIN: C, D 1YSA
SRC MOL_ID: 1; 1YSA
SRC SYNTHETIC: YES; 1YSA
SRC MOL_ID: 2; 1YSA
SRC SYNTHETIC: YES; 1YSA
SRC MOL_ID: 3; 1YSA
SRC ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; 1YSA
SRC ORGANISM_COMMON: BAKER'S YEAST; 1YSA
SRC ORGANISM_TAXID: 4932 1YSA
AUT T.E.ELLENBERGER,C.J.BRANDL,K.STRUHL,S.C.HARRISON 1YSA
REM 1YSA
REM -------------------- Secondary structure summary ------------------- 1YSA
REM 1YSA
CHN /data/npidb/pdb/pdb_new/all/pdb1ysa.pdb C 1YSA
REM 1YSA
REM . . . . . 1YSA
SEQ 1 KDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 50 1YSA
STR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 1YSA
REM 1YSA
REM 1YSA
SEQ 51 KKLVGER 57 1YSA
STR HHTTT 1YSA
REM 1YSA
CHN /data/npidb/pdb/pdb_new/all/pdb1ysa.pdb D 1YSA
REM 1YSA
REM . . . . . 1YSA
SEQ 1 MKDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVAR 50 1YSA
STR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 1YSA
REM 1YSA
REM 1YSA
SEQ 51 LKKLVGE 57 1YSA
STR HHHHH 1YSA
REM 1YSA
REM 1YSA
REM 1YSA
LOC AlphaHelix PRO 227 C LYS 276 C 1YSA
LOC AlphaHelix PRO 227 D VAL 278 D 1YSA
LOC TurnIV LYS 276 C GLY 279 C 1YSA
REM 1YSA
REM --------------- Detailed secondary structure assignment------------- 1YSA
REM 1YSA
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1YSA
ASG LYS C 225 1 C Coil 360.00 92.99 207.4 1YSA
ASG ASP C 226 2 C Coil -55.54 154.94 119.1 1YSA
ASG PRO C 227 3 H AlphaHelix -45.94 -34.10 95.4 1YSA
ASG ALA C 228 4 H AlphaHelix -60.42 -35.21 53.7 1YSA
ASG ALA C 229 5 H AlphaHelix -73.01 -54.44 34.0 1YSA
ASG LEU C 230 6 H AlphaHelix -46.34 -58.16 79.1 1YSA
ASG LYS C 231 7 H AlphaHelix -53.02 -46.81 99.6 1YSA
ASG ARG C 232 8 H AlphaHelix -64.16 -53.76 175.1 1YSA
ASG ALA C 233 9 H AlphaHelix -61.97 -22.11 68.0 1YSA
ASG ARG C 234 10 H AlphaHelix -80.70 -39.28 135.9 1YSA
ASG ASN C 235 11 H AlphaHelix -56.80 -50.05 88.8 1YSA
ASG THR C 236 12 H AlphaHelix -44.73 -46.86 81.4 1YSA
ASG GLU C 237 13 H AlphaHelix -64.98 -41.72 100.3 1YSA
ASG ALA C 238 14 H AlphaHelix -67.90 -22.50 42.1 1YSA
ASG ALA C 239 15 H AlphaHelix -72.28 -37.67 44.9 1YSA
ASG ARG C 240 16 H AlphaHelix -59.70 -65.63 120.5 1YSA
ASG ARG C 241 17 H AlphaHelix -48.91 -40.27 127.9 1YSA
ASG SER C 242 18 H AlphaHelix -63.76 -35.23 27.9 1YSA
ASG ARG C 243 19 H AlphaHelix -66.17 -46.79 162.1 1YSA
ASG ALA C 244 20 H AlphaHelix -48.78 -41.17 56.5 1YSA
ASG ARG C 245 21 H AlphaHelix -73.85 -43.05 107.4 1YSA
ASG LYS C 246 22 H AlphaHelix -65.24 -32.96 109.5 1YSA
ASG LEU C 247 23 H AlphaHelix -56.23 -55.00 96.0 1YSA
ASG GLN C 248 24 H AlphaHelix -58.70 -51.78 109.4 1YSA
ASG ARG C 249 25 H AlphaHelix -41.56 -39.40 154.4 1YSA
ASG MET C 250 26 H AlphaHelix -83.21 -32.46 53.9 1YSA
ASG LYS C 251 27 H AlphaHelix -61.80 -32.61 78.8 1YSA
ASG GLN C 252 28 H AlphaHelix -70.69 -48.88 116.7 1YSA
ASG LEU C 253 29 H AlphaHelix -57.79 -24.51 7.8 1YSA
ASG GLU C 254 30 H AlphaHelix -65.31 -44.28 80.3 1YSA
ASG ASP C 255 31 H AlphaHelix -65.17 -57.78 79.6 1YSA
ASG LYS C 256 32 H AlphaHelix -45.41 -42.70 106.0 1YSA
ASG VAL C 257 33 H AlphaHelix -65.69 -34.01 13.0 1YSA
ASG GLU C 258 34 H AlphaHelix -59.56 -66.52 127.5 1YSA
ASG GLU C 259 35 H AlphaHelix -56.42 -34.10 104.0 1YSA
ASG LEU C 260 36 H AlphaHelix -66.46 -39.95 22.4 1YSA
ASG LEU C 261 37 H AlphaHelix -69.47 -38.10 77.0 1YSA
ASG SER C 262 38 H AlphaHelix -58.89 -40.18 65.4 1YSA
ASG LYS C 263 39 H AlphaHelix -65.32 -63.79 72.1 1YSA
ASG ASN C 264 40 H AlphaHelix -47.73 -30.18 31.9 1YSA
ASG TYR C 265 41 H AlphaHelix -61.36 -60.34 140.8 1YSA
ASG HIS C 266 42 H AlphaHelix -65.20 -38.86 113.0 1YSA
ASG LEU C 267 43 H AlphaHelix -63.08 -52.83 33.9 1YSA
ASG GLU C 268 44 H AlphaHelix -66.06 -25.60 82.6 1YSA
ASG ASN C 269 45 H AlphaHelix -63.43 -56.25 86.2 1YSA
ASG GLU C 270 46 H AlphaHelix -46.62 -43.84 58.5 1YSA
ASG VAL C 271 47 H AlphaHelix -65.49 -58.48 0.0 1YSA
ASG ALA C 272 48 H AlphaHelix -51.87 -33.82 52.4 1YSA
ASG ARG C 273 49 H AlphaHelix -64.88 -62.86 141.2 1YSA
ASG LEU C 274 50 H AlphaHelix -65.97 -26.77 0.0 1YSA
ASG LYS C 275 51 H AlphaHelix -53.49 -53.56 44.7 1YSA
ASG LYS C 276 52 H AlphaHelix -52.13 -53.62 177.4 1YSA
ASG LEU C 277 53 T Turn -78.38 53.75 88.0 1YSA
ASG VAL C 278 54 T Turn 177.79 -93.20 78.1 1YSA
ASG GLY C 279 55 T Turn -141.61 -172.89 36.8 1YSA
ASG GLU C 280 56 C Coil -113.28 138.37 163.9 1YSA
ASG ARG C 281 57 C Coil -154.21 360.00 235.3 1YSA
ASG MET D 224 1 C Coil 360.00 -24.86 221.7 1YSA
ASG LYS D 225 2 C Coil -139.91 -154.80 164.4 1YSA
ASG ASP D 226 3 C Coil -92.16 50.73 103.6 1YSA
ASG PRO D 227 4 H AlphaHelix -59.52 -64.90 117.1 1YSA
ASG ALA D 228 5 H AlphaHelix -64.13 -34.46 60.7 1YSA
ASG ALA D 229 6 H AlphaHelix -55.15 -14.46 35.0 1YSA
ASG LEU D 230 7 H AlphaHelix -79.25 -43.91 95.4 1YSA
ASG LYS D 231 8 H AlphaHelix -58.19 -46.08 170.3 1YSA
ASG ARG D 232 9 H AlphaHelix -65.87 -57.22 174.7 1YSA
ASG ALA D 233 10 H AlphaHelix -54.47 -18.87 61.0 1YSA
ASG ARG D 234 11 H AlphaHelix -88.57 -46.72 168.0 1YSA
ASG ASN D 235 12 H AlphaHelix -54.17 -50.09 107.8 1YSA
ASG THR D 236 13 H AlphaHelix -52.02 -36.56 67.5 1YSA
ASG GLU D 237 14 H AlphaHelix -64.34 -50.29 86.8 1YSA
ASG ALA D 238 15 H AlphaHelix -52.69 -57.12 34.2 1YSA
ASG ALA D 239 16 H AlphaHelix -53.98 -38.15 23.9 1YSA
ASG ARG D 240 17 H AlphaHelix -53.76 -40.11 168.7 1YSA
ASG ARG D 241 18 H AlphaHelix -69.56 -47.59 130.2 1YSA
ASG SER D 242 19 H AlphaHelix -66.48 -43.34 64.8 1YSA
ASG ARG D 243 20 H AlphaHelix -65.94 -35.32 172.6 1YSA
ASG ALA D 244 21 H AlphaHelix -57.05 -50.21 57.4 1YSA
ASG ARG D 245 22 H AlphaHelix -46.11 -55.61 125.3 1YSA
ASG LYS D 246 23 H AlphaHelix -56.93 -38.97 91.1 1YSA
ASG LEU D 247 24 H AlphaHelix -60.26 -50.04 68.3 1YSA
ASG GLN D 248 25 H AlphaHelix -72.60 -30.45 128.3 1YSA
ASG ARG D 249 26 H AlphaHelix -65.09 -44.96 112.4 1YSA
ASG MET D 250 27 H AlphaHelix -56.60 -57.12 69.5 1YSA
ASG LYS D 251 28 H AlphaHelix -62.89 -36.88 116.9 1YSA
ASG GLN D 252 29 H AlphaHelix -53.83 -46.35 104.3 1YSA
ASG LEU D 253 30 H AlphaHelix -67.84 -49.13 27.5 1YSA
ASG GLU D 254 31 H AlphaHelix -49.31 -31.26 87.6 1YSA
ASG ASP D 255 32 H AlphaHelix -72.12 -53.15 111.6 1YSA
ASG LYS D 256 33 H AlphaHelix -53.47 -39.53 81.7 1YSA
ASG VAL D 257 34 H AlphaHelix -56.18 -52.95 18.6 1YSA
ASG GLU D 258 35 H AlphaHelix -52.61 -58.29 141.0 1YSA
ASG GLU D 259 36 H AlphaHelix -45.89 -59.23 91.5 1YSA
ASG LEU D 260 37 H AlphaHelix -56.49 -41.66 1.4 1YSA
ASG LEU D 261 38 H AlphaHelix -55.85 -40.28 71.5 1YSA
ASG SER D 262 39 H AlphaHelix -72.19 -40.40 82.7 1YSA
ASG LYS D 263 40 H AlphaHelix -59.95 -57.95 92.0 1YSA
ASG ASN D 264 41 H AlphaHelix -62.03 -30.61 0.0 1YSA
ASG TYR D 265 42 H AlphaHelix -59.52 -38.62 165.4 1YSA
ASG HIS D 266 43 H AlphaHelix -61.99 -36.08 105.1 1YSA
ASG LEU D 267 44 H AlphaHelix -74.57 -51.88 11.0 1YSA
ASG GLU D 268 45 H AlphaHelix -46.66 -50.41 90.0 1YSA
ASG ASN D 269 46 H AlphaHelix -52.40 -47.79 104.6 1YSA
ASG GLU D 270 47 H AlphaHelix -61.93 -34.29 31.3 1YSA
ASG VAL D 271 48 H AlphaHelix -71.86 -34.56 19.4 1YSA
ASG ALA D 272 49 H AlphaHelix -65.57 -40.24 63.9 1YSA
ASG ARG D 273 50 H AlphaHelix -63.04 -63.45 89.1 1YSA
ASG LEU D 274 51 H AlphaHelix -54.56 -35.59 1.8 1YSA
ASG LYS D 275 52 H AlphaHelix -71.73 -6.95 32.5 1YSA
ASG LYS D 276 53 H AlphaHelix -96.32 -34.73 166.1 1YSA
ASG LEU D 277 54 H AlphaHelix -55.86 -53.66 87.2 1YSA
ASG VAL D 278 55 H AlphaHelix -102.84 -85.44 69.5 1YSA
ASG GLY D 279 56 C Coil 155.94 157.46 30.4 1YSA
ASG GLU D 280 57 C Coil -50.52 360.00 189.5 1YSA