Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/2k7f.std.txt Дата изменения: Sat May 19 17:58:16 2012 Дата индексирования: Tue Oct 2 12:11:13 2012 Кодировка:

REM -------------------------------------------------------------------- 2K7F
REM 2K7F
REM STRIDE: Knowledge-based secondary structure assignment 2K7F
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2K7F
REM 2K7F
REM Residue accessible surface area calculation 2K7F
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2K7F
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2K7F
REM 2K7F
REM ------------------------ General information ----------------------- 2K7F
REM 2K7F
HDR REPLICATION/DNA 10-AUG-08 2K7F 2K7F
CMP MOL_ID: 1; 2K7F
CMP MOLECULE: REPLICATION FACTOR C SUBUNIT 1; 2K7F
CMP CHAIN: A; 2K7F
CMP FRAGMENT: BRCT DOMAIN (UNP RESIDUES 375-480); 2K7F
CMP SYNONYM: ACTIVATOR 1 SUBUNIT 1, REPLICATION FACTOR C LARGE S 2K7F
CMP RF-C 140 KDA SUBUNIT, ACTIVATOR 1 140 KDA SUBUNIT, A1 140 KD 2K7F
CMP SUBUNIT, ACTIVATOR 1 LARGE SUBUNIT, DNA-BINDING PROTEIN PO-G 2K7F
CMP ENGINEERED: YES; 2K7F
CMP MOL_ID: 2; 2K7F
CMP MOLECULE: 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP 2K7F
CMP DA)-3'; 2K7F
CMP CHAIN: B; 2K7F
CMP ENGINEERED: YES; 2K7F
CMP OTHER_DETAILS: DNA STRAND; 2K7F
CMP MOL_ID: 3; 2K7F
CMP MOLECULE: 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3'; 2K7F
CMP CHAIN: C; 2K7F
CMP ENGINEERED: YES; 2K7F
CMP OTHER_DETAILS: DNA STRAND PRIMER 2K7F
SRC MOL_ID: 1; 2K7F
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 2K7F
SRC ORGANISM_COMMON: HUMAN; 2K7F
SRC ORGANISM_TAXID: 9606; 2K7F
SRC GENE: RFC1, RFC140; 2K7F
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2K7F
SRC EXPRESSION_SYSTEM_TAXID: 562; 2K7F
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 2K7F
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2K7F
SRC EXPRESSION_SYSTEM_PLASMID: PET20B; 2K7F
SRC MOL_ID: 2; 2K7F
SRC SYNTHETIC: YES; 2K7F
SRC MOL_ID: 3; 2K7F
SRC SYNTHETIC: YES 2K7F
AUT M.KOBAYASHI,E.AB,A.BONVIN,G.SIEGAL 2K7F
REM 2K7F
REM -------------------- Secondary structure summary ------------------- 2K7F
REM 2K7F
CHN /data/npidb/pdb/pdb_new/all/pdb2k7f.pdb A 2K7F
REM 2K7F
REM . . . . . 2K7F
SEQ 1 KRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERD 50 2K7F
STR TTTTHHHHHH TTTTTTTT TTTTTTTTEEEEE BTTTT HH 2K7F
REM 2K7F
REM . . . . . 2K7F
SEQ 51 EAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDG 100 2K7F
STR HHHHHHHHH EE TTTTEEEEETBTTTHHHHHHHHHH EEE HHH 2K7F
REM 2K7F
REM 2K7F
SEQ 101 LLNLIRNLE 109 2K7F
STR HHHHHHHH 2K7F
REM 2K7F
REM 2K7F
REM 2K7F
LOC AlphaHelix TYR 382 A ASN 387 A 2K7F
LOC AlphaHelix ARG 423 A TYR 433 A 2K7F
LOC AlphaHelix GLN 456 A LEU 465 A 2K7F
LOC AlphaHelix GLU 472 A LEU 482 A 2K7F
LOC Strand ILE 411 A THR 415 A 2K7F
LOC Strand LYS 436 A VAL 437 A 2K7F
LOC Strand ASN 446 A MET 450 A 2K7F
LOC Strand LYS 468 A ILE 470 A 2K7F
LOC TurnI ASN 378 A ALA 381 A 2K7F
LOC TurnIV TYR 379 A TYR 382 A 2K7F
LOC TurnIV PRO 391 A LEU 394 A 2K7F
LOC TurnII ALA 393 A SER 396 A 2K7F
LOC TurnIV LEU 394 A LYS 397 A 2K7F
LOC TurnIV GLY 395 A GLU 398 A 2K7F
LOC TurnI ALA 403 A CYS 406 A 2K7F
LOC TurnI ASN 405 A GLU 408 A 2K7F
LOC TurnIV LEU 407 A LEU 410 A 2K7F
LOC TurnIV LEU 418 A ILE 421 A 2K7F
LOC TurnI SER 442 A THR 445 A 2K7F
LOC TurnIV THR 445 A LEU 448 A 2K7F
LOC TurnIV MET 450 A ASP 453 A 2K7F
LOC GammaInv SER 454 A GLN 456 A 2K7F
REM 2K7F
REM --------------- Detailed secondary structure assignment------------- 2K7F
REM 2K7F
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2K7F
ASG LYS A 375 1 C Coil 360.00 -22.53 245.8 2K7F
ASG ARG A 376 2 C Coil -91.02 142.85 237.6 2K7F
ASG THR A 377 3 C Coil -163.42 -177.37 89.1 2K7F
ASG ASN A 378 4 T Turn -82.37 55.41 121.6 2K7F
ASG TYR A 379 5 T Turn -71.18 -17.22 99.6 2K7F
ASG GLN A 380 6 T Turn -71.11 -14.77 105.7 2K7F
ASG ALA A 381 7 T Turn -71.05 -48.52 70.1 2K7F
ASG TYR A 382 8 H AlphaHelix -93.10 1.82 121.2 2K7F
ASG ARG A 383 9 H AlphaHelix -67.10 -24.80 71.8 2K7F
ASG SER A 384 10 H AlphaHelix -58.51 -46.60 65.5 2K7F
ASG TYR A 385 11 H AlphaHelix -78.15 -33.44 164.6 2K7F
ASG LEU A 386 12 H AlphaHelix -60.59 -63.48 98.3 2K7F
ASG ASN A 387 13 H AlphaHelix -113.12 1.26 29.8 2K7F
ASG ARG A 388 14 C Coil 63.58 40.35 174.5 2K7F
ASG GLU A 389 15 C Coil -86.62 160.56 38.7 2K7F
ASG GLY A 390 16 C Coil 138.96 92.14 34.7 2K7F
ASG PRO A 391 17 T Turn -62.64 109.89 52.3 2K7F
ASG LYS A 392 18 T Turn -79.73 -63.59 164.8 2K7F
ASG ALA A 393 19 T Turn -95.16 68.82 43.0 2K7F
ASG LEU A 394 20 T Turn -96.14 113.32 68.8 2K7F
ASG GLY A 395 21 T Turn 99.15 16.98 61.1 2K7F
ASG SER A 396 22 T Turn -156.81 21.70 114.0 2K7F
ASG LYS A 397 23 T Turn -143.35 -42.51 81.1 2K7F
ASG GLU A 398 24 T Turn -89.66 -179.86 12.3 2K7F
ASG ILE A 399 25 C Coil 61.32 85.18 67.2 2K7F
ASG PRO A 400 26 C Coil -83.41 -175.93 33.6 2K7F
ASG LYS A 401 27 C Coil -110.84 28.90 198.3 2K7F
ASG GLY A 402 28 C Coil -75.97 166.78 4.8 2K7F
ASG ALA A 403 29 T Turn -51.53 126.09 26.7 2K7F
ASG GLU A 404 30 T Turn -59.44 -23.83 90.9 2K7F
ASG ASN A 405 31 T Turn -83.71 -4.52 91.5 2K7F
ASG CYS A 406 32 T Turn -51.16 -60.36 19.8 2K7F
ASG LEU A 407 33 T Turn -81.90 -4.37 1.2 2K7F
ASG GLU A 408 34 T Turn -72.57 96.28 125.4 2K7F
ASG GLY A 409 35 T Turn 163.13 -50.51 75.6 2K7F
ASG LEU A 410 36 T Turn -110.66 177.34 41.4 2K7F
ASG ILE A 411 37 E Strand -104.34 127.27 31.3 2K7F
ASG PHE A 412 38 E Strand -106.05 115.96 0.2 2K7F
ASG VAL A 413 39 E Strand -111.21 116.56 3.2 2K7F
ASG ILE A 414 40 E Strand -107.97 124.24 15.9 2K7F
ASG THR A 415 41 E Strand -121.08 150.18 3.3 2K7F
ASG GLY A 416 42 C Coil 69.94 -124.18 13.9 2K7F
ASG VAL A 417 43 B Bridge -151.43 150.42 26.8 2K7F
ASG LEU A 418 44 T Turn -107.13 -159.61 13.9 2K7F
ASG GLU A 419 45 T Turn -51.32 -61.00 101.7 2K7F
ASG SER A 420 46 T Turn -160.59 96.04 8.1 2K7F
ASG ILE A 421 47 T Turn -158.25 148.24 9.7 2K7F
ASG GLU A 422 48 C Coil -95.04 152.82 91.4 2K7F
ASG ARG A 423 49 H AlphaHelix -60.02 -35.15 135.3 2K7F
ASG ASP A 424 50 H AlphaHelix -70.83 -34.95 97.2 2K7F
ASG GLU A 425 51 H AlphaHelix -73.42 -31.53 52.1 2K7F
ASG ALA A 426 52 H AlphaHelix -73.63 -44.27 2.2 2K7F
ASG LYS A 427 53 H AlphaHelix -61.84 -44.56 84.2 2K7F
ASG SER A 428 54 H AlphaHelix -61.41 -33.73 63.5 2K7F
ASG LEU A 429 55 H AlphaHelix -70.82 -55.08 0.4 2K7F
ASG ILE A 430 56 H AlphaHelix -59.21 -50.74 0.0 2K7F
ASG GLU A 431 57 H AlphaHelix -57.63 -47.59 97.4 2K7F
ASG ARG A 432 58 H AlphaHelix -62.88 -33.36 95.3 2K7F
ASG TYR A 433 59 H AlphaHelix -84.65 21.75 0.0 2K7F
ASG GLY A 434 60 C Coil 67.63 14.60 42.3 2K7F
ASG GLY A 435 61 C Coil -98.34 153.02 7.5 2K7F
ASG LYS A 436 62 E Strand -102.16 143.66 116.5 2K7F
ASG VAL A 437 63 E Strand -133.98 133.66 28.2 2K7F
ASG THR A 438 64 C Coil -144.08 158.34 52.2 2K7F
ASG GLY A 439 65 C Coil -83.82 -0.16 54.4 2K7F
ASG ASN A 440 66 C Coil -122.93 111.98 95.8 2K7F
ASG VAL A 441 67 C Coil -53.06 136.07 16.9 2K7F
ASG SER A 442 68 T Turn -115.14 174.41 39.6 2K7F
ASG LYS A 443 69 T Turn -73.13 -19.45 169.4 2K7F
ASG LYS A 444 70 T Turn -107.03 19.71 161.6 2K7F
ASG THR A 445 71 T Turn -70.79 -57.12 0.0 2K7F
ASG ASN A 446 72 E Strand 73.04 -38.01 63.1 2K7F
ASG TYR A 447 73 E Strand -130.08 113.63 59.1 2K7F
ASG LEU A 448 74 E Strand -105.85 118.44 3.8 2K7F
ASG VAL A 449 75 E Strand -87.44 112.84 0.0 2K7F
ASG MET A 450 76 E Strand -140.94 119.50 41.0 2K7F
ASG GLY A 451 77 T Turn -106.32 -88.05 34.9 2K7F
ASG ARG A 452 78 B Bridge -107.68 86.77 125.2 2K7F
ASG ASP A 453 79 T Turn -135.79 164.45 48.2 2K7F
ASG SER A 454 80 T Turn -127.74 -4.49 102.0 2K7F
ASG GLY A 455 81 T Turn -62.06 85.95 17.6 2K7F
ASG GLN A 456 82 H AlphaHelix -70.38 -29.93 158.7 2K7F
ASG SER A 457 83 H AlphaHelix -60.50 -41.81 93.0 2K7F
ASG LYS A 458 84 H AlphaHelix -80.52 -37.82 58.9 2K7F
ASG SER A 459 85 H AlphaHelix -64.40 -32.23 26.5 2K7F
ASG ASP A 460 86 H AlphaHelix -58.99 -44.72 105.2 2K7F
ASG LYS A 461 87 H AlphaHelix -59.97 -52.45 80.2 2K7F
ASG ALA A 462 88 H AlphaHelix -57.26 -45.08 0.0 2K7F
ASG ALA A 463 89 H AlphaHelix -61.61 -39.54 72.6 2K7F
ASG ALA A 464 90 H AlphaHelix -71.22 -30.94 84.0 2K7F
ASG LEU A 465 91 H AlphaHelix -77.56 -29.38 76.7 2K7F
ASG GLY A 466 92 C Coil 104.34 25.99 49.7 2K7F
ASG THR A 467 93 C Coil -85.35 131.26 12.0 2K7F
ASG LYS A 468 94 E Strand -86.61 144.45 92.8 2K7F
ASG ILE A 469 95 E Strand -93.22 126.10 83.0 2K7F
ASG ILE A 470 96 E Strand -124.58 160.68 23.5 2K7F
ASG ASP A 471 97 C Coil -103.08 -167.57 71.7 2K7F
ASG GLU A 472 98 H AlphaHelix -58.54 -50.73 6.0 2K7F
ASG ASP A 473 99 H AlphaHelix -66.75 -32.36 67.0 2K7F
ASG GLY A 474 100 H AlphaHelix -59.45 -39.57 11.3 2K7F
ASG LEU A 475 101 H AlphaHelix -71.07 -42.31 6.8 2K7F
ASG LEU A 476 102 H AlphaHelix -72.56 -25.20 17.3 2K7F
ASG ASN A 477 103 H AlphaHelix -60.82 -35.33 81.0 2K7F
ASG LEU A 478 104 H AlphaHelix -62.38 -45.66 49.6 2K7F
ASG ILE A 479 105 H AlphaHelix -71.66 -33.53 0.9 2K7F
ASG ARG A 480 106 H AlphaHelix -67.44 -25.03 111.3 2K7F
ASG ASN A 481 107 H AlphaHelix -76.19 -45.49 122.8 2K7F
ASG LEU A 482 108 H AlphaHelix -75.26 -51.65 82.6 2K7F
ASG GLU A 483 109 C Coil 54.03 360.00 174.9 2K7F