Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/2lev.std.txt Дата изменения: Sat May 19 18:15:27 2012 Дата индексирования: Tue Oct 2 12:11:56 2012 Кодировка:

REM -------------------------------------------------------------------- 2LEV
REM 2LEV
REM STRIDE: Knowledge-based secondary structure assignment 2LEV
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2LEV
REM 2LEV
REM Residue accessible surface area calculation 2LEV
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2LEV
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2LEV
REM 2LEV
REM ------------------------ General information ----------------------- 2LEV
REM 2LEV
HDR TRANSCRIPTION REGULATOR/DNA 23-JUN-11 2LEV 2LEV
CMP MOL_ID: 1; 2LEV
CMP MOLECULE: LER; 2LEV
CMP CHAIN: A; 2LEV
CMP FRAGMENT: SEQUENCE DATABASE RESIDUES 56-102; 2LEV
CMP ENGINEERED: YES; 2LEV
CMP MOL_ID: 2; 2LEV
CMP MOLECULE: DNA (5'-D(*GP*CP*GP*AP*TP*AP*AP*TP*TP*GP*AP*TP*AP* 2LEV
CMP 3'); 2LEV
CMP CHAIN: B; 2LEV
CMP ENGINEERED: YES; 2LEV
CMP MOL_ID: 3; 2LEV
CMP MOLECULE: DNA (5'-D(*CP*CP*TP*AP*TP*CP*AP*AP*TP*TP*AP*TP*CP* 2LEV
CMP 3'); 2LEV
CMP CHAIN: C; 2LEV
CMP ENGINEERED: YES 2LEV
SRC MOL_ID: 1; 2LEV
SRC ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 2LEV
SRC ORGANISM_TAXID: 562; 2LEV
SRC GENE: LER; 2LEV
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2LEV
SRC EXPRESSION_SYSTEM_TAXID: 562; 2LEV
SRC EXPRESSION_SYSTEM_VECTOR: PHAT2; 2LEV
SRC MOL_ID: 2; 2LEV
SRC SYNTHETIC: YES; 2LEV
SRC MOL_ID: 3; 2LEV
SRC SYNTHETIC: YES 2LEV
AUT T.N.CORDEIRO,H.SCHIMDT,C.MADRID,A.JUAREZ,P.BERNADO,C.GRISIENG 2LEV
AUT J.GARCIA,M.PONS 2LEV
REM 2LEV
REM -------------------- Secondary structure summary ------------------- 2LEV
REM 2LEV
CHN /data/npidb/pdb/pdb_new/all/pdb2lev.pdb A 2LEV
REM 2LEV
REM . . . . . 2LEV
SEQ 1 SHHHHHHSMGNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFL 50 2LEV
STR TTTTTEEEETTTT EE HHHHHHHHH GGGGE 2LEV
REM 2LEV
REM 2LEV
SEQ 51 VKDTEEE 57 2LEV
STR EETTTT 2LEV
REM 2LEV
REM 2LEV
REM 2LEV
LOC AlphaHelix ARG 24 A ASN 32 A 2LEV
LOC 310Helix LYS 36 A PHE 39 A 2LEV
LOC Strand VAL 6 A ARG 9 A 2LEV
LOC Strand THR 15 A TRP 16 A 2LEV
LOC Strand LEU 40 A LYS 42 A 2LEV
LOC TurnIV ASN 1 A LYS 4 A 2LEV
LOC TurnI ASN 10 A GLY 13 A 2LEV
LOC TurnVIII LYS 42 A GLU 45 A 2LEV
LOC TurnIV ASP 43 A GLU 46 A 2LEV
LOC GammaInv LYS 4 A VAL 6 A 2LEV
REM 2LEV
REM --------------- Detailed secondary structure assignment------------- 2LEV
REM 2LEV
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2LEV
ASG SER A -9 1 C Coil 360.00 146.49 148.1 2LEV
ASG HIS A -8 2 C Coil -83.04 84.09 199.7 2LEV
ASG HIS A -7 3 C Coil -96.96 87.93 158.5 2LEV
ASG HIS A -6 4 C Coil -152.95 168.12 173.8 2LEV
ASG HIS A -5 5 C Coil -66.17 -54.57 171.8 2LEV
ASG HIS A -4 6 C Coil 68.57 -10.92 104.6 2LEV
ASG HIS A -3 7 C Coil 43.90 33.33 67.4 2LEV
ASG SER A -2 8 C Coil -101.34 -62.16 50.1 2LEV
ASG MET A -1 9 C Coil 55.45 176.94 86.8 2LEV
ASG GLY A 0 10 C Coil -104.08 81.40 79.8 2LEV
ASG ASN A 1 11 T Turn -139.79 138.55 49.6 2LEV
ASG SER A 2 12 T Turn -151.36 -39.82 96.5 2LEV
ASG SER A 3 13 T Turn -85.91 59.13 122.6 2LEV
ASG LYS A 4 14 T Turn -162.91 -177.16 120.2 2LEV
ASG GLY A 5 15 T Turn -70.38 76.57 36.1 2LEV
ASG VAL A 6 16 E Strand -90.38 132.99 43.1 2LEV
ASG TYR A 7 17 E Strand -156.03 164.83 53.9 2LEV
ASG TYR A 8 18 E Strand -104.57 133.27 21.2 2LEV
ASG ARG A 9 19 E Strand -131.71 126.53 83.6 2LEV
ASG ASN A 10 20 T Turn -111.67 -179.08 17.1 2LEV
ASG GLU A 11 21 T Turn -56.89 -24.93 151.2 2LEV
ASG GLU A 12 22 T Turn -70.91 -14.33 100.6 2LEV
ASG GLY A 13 23 T Turn 87.86 -14.29 42.5 2LEV
ASG GLN A 14 24 C Coil -65.99 149.22 103.8 2LEV
ASG THR A 15 25 E Strand -127.92 146.62 76.2 2LEV
ASG TRP A 16 26 E Strand -119.54 132.84 24.5 2LEV
ASG SER A 17 27 C Coil -65.41 -25.09 84.6 2LEV
ASG GLY A 18 28 C Coil 95.92 -9.05 34.3 2LEV
ASG VAL A 19 29 C Coil -107.90 158.75 117.9 2LEV
ASG GLY A 20 30 C Coil 73.89 -108.96 79.6 2LEV
ASG ARG A 21 31 C Coil -133.33 150.23 176.8 2LEV
ASG GLN A 22 32 C Coil -83.06 155.46 73.9 2LEV
ASG PRO A 23 33 C Coil -73.83 166.68 23.3 2LEV
ASG ARG A 24 34 H AlphaHelix -58.51 -31.06 140.9 2LEV
ASG TRP A 25 35 H AlphaHelix -73.71 -21.42 8.9 2LEV
ASG LEU A 26 36 H AlphaHelix -64.95 -44.21 0.0 2LEV
ASG LYS A 27 37 H AlphaHelix -62.21 -42.42 120.6 2LEV
ASG GLU A 28 38 H AlphaHelix -65.67 -44.56 81.0 2LEV
ASG ALA A 29 39 H AlphaHelix -64.70 -33.79 5.6 2LEV
ASG LEU A 30 40 H AlphaHelix -66.78 -46.91 79.5 2LEV
ASG LEU A 31 41 H AlphaHelix -79.13 -7.19 116.0 2LEV
ASG ASN A 32 42 H AlphaHelix -70.26 -11.77 115.6 2LEV
ASG GLY A 33 43 C Coil 110.40 11.89 74.3 2LEV
ASG MET A 34 44 C Coil -135.60 142.98 50.4 2LEV
ASG LYS A 35 45 C Coil -73.28 149.75 123.9 2LEV
ASG LYS A 36 46 G 310Helix -59.56 -29.85 66.9 2LEV
ASG GLU A 37 47 G 310Helix -63.90 -26.28 79.5 2LEV
ASG ASP A 38 48 G 310Helix -66.19 -15.36 78.2 2LEV
ASG PHE A 39 49 G 310Helix -128.64 32.82 21.4 2LEV
ASG LEU A 40 50 E Strand -89.14 105.89 19.9 2LEV
ASG VAL A 41 51 E Strand -113.16 135.20 15.9 2LEV
ASG LYS A 42 52 E Strand -107.66 173.78 2.8 2LEV
ASG ASP A 43 53 T Turn -54.64 -32.37 68.3 2LEV
ASG THR A 44 54 T Turn -102.30 152.82 59.7 2LEV
ASG GLU A 45 55 T Turn 60.58 28.80 77.2 2LEV
ASG GLU A 46 56 T Turn -84.47 152.47 98.9 2LEV
ASG GLU A 47 57 C Coil -98.84 360.00 210.6 2LEV