Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/2xs7.std.txt Дата изменения: Sun May 20 06:31:45 2012 Дата индексирования: Tue Oct 2 12:18:43 2012 Кодировка:

REM -------------------------------------------------------------------- 2XS7
REM 2XS7
REM STRIDE: Knowledge-based secondary structure assignment 2XS7
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2XS7
REM 2XS7
REM Residue accessible surface area calculation 2XS7
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2XS7
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2XS7
REM 2XS7
REM ------------------------ General information ----------------------- 2XS7
REM 2XS7
HDR RNA BINDING PROTEIN/RNA 24-SEP-10 2XS7 2XS7
CMP MOL_ID: 1; 2XS7
CMP MOLECULE: DELETED IN AZOOSPERMIA-LIKE; 2XS7
CMP CHAIN: A; 2XS7
CMP FRAGMENT: RESIDUES 32-117; 2XS7
CMP SYNONYM: DAZ-LIKE AUTOSOMAL, DELETED IN AZOOSPERMIA-LIKE 1; 2XS7
CMP ENGINEERED: YES; 2XS7
CMP MOL_ID: 2; 2XS7
CMP MOLECULE: 5'-R(*UP*UP*GP*UP*UP*UP)-3'; 2XS7
CMP CHAIN: B; 2XS7
CMP SYNONYM: SYCP 3'-UTR, SYCP3 3'-UTR 2XS7
SRC MOL_ID: 1; 2XS7
SRC ORGANISM_SCIENTIFIC: MUS MUSCULUS; 2XS7
SRC ORGANISM_COMMON: HOUSE MOUSE; 2XS7
SRC ORGANISM_TAXID: 10090; 2XS7
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2XS7
SRC EXPRESSION_SYSTEM_TAXID: 469008; 2XS7
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 2XS7
SRC EXPRESSION_SYSTEM_VARIANT: ROSETTA-2 PLYSS; 2XS7
SRC EXPRESSION_SYSTEM_PLASMID: PET-SUMO-28A; 2XS7
SRC MOL_ID: 2; 2XS7
SRC SYNTHETIC: YES; 2XS7
SRC ORGANISM_SCIENTIFIC: MUS MUSCULUS; 2XS7
SRC ORGANISM_COMMON: HOUSE MOUSE; 2XS7
SRC ORGANISM_TAXID: 10090 2XS7
AUT H.T.JENKINS,T.A.EDWARDS 2XS7
REM 2XS7
REM -------------------- Secondary structure summary ------------------- 2XS7
REM 2XS7
CHN /data/npidb/pdb/pdb_new/all/pdb2xs7.pdb A 2XS7
REM 2XS7
REM . . . . . 2XS7
SEQ 1 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG 50 2XS7
STR EEEEEEEEEEE TTTT HHHHHHHHGGG EEEEEEEETTTT EEE 2XS7
REM 2XS7
REM . . . 2XS7
SEQ 51 YGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQ 86 2XS7
STR EEEEEE HHHHHH BTTTTT BEEEEEEEE 2XS7
REM 2XS7
REM 2XS7
REM 2XS7
LOC AlphaHelix GLU 53 A PHE 60 A 2XS7
LOC AlphaHelix VAL 93 A GLU 98 A 2XS7
LOC 310Helix ALA 61 A TYR 63 A 2XS7
LOC Strand GLY 35 A GLY 45 A 2XS7
LOC Strand VAL 66 A THR 73 A 2XS7
LOC Strand SER 79 A PHE 87 A 2XS7
LOC Strand LYS 109 A LYS 116 A 2XS7
LOC TurnIV MET 38 A THR 41 A 2XS7
LOC TurnI ASP 48 A MET 51 A 2XS7
LOC TurnI ASP 74 A GLY 77 A 2XS7
LOC TurnI ASN 102 A GLY 105 A 2XS7
LOC TurnIV PHE 103 A LYS 106 A 2XS7
REM 2XS7
REM --------------- Detailed secondary structure assignment------------- 2XS7
REM 2XS7
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2XS7
ASG LEU A 32 1 C Coil 360.00 144.72 211.7 2XS7
ASG PRO A 33 2 C Coil -75.70 147.28 107.3 2XS7
ASG GLU A 34 3 C Coil -66.82 132.19 118.9 2XS7
ASG GLY A 35 4 E Strand -159.71 152.95 34.7 2XS7
ASG LYS A 36 5 E Strand -106.29 132.51 95.8 2XS7
ASG ILE A 37 6 E Strand -79.41 126.19 115.0 2XS7
ASG MET A 38 7 E Strand -88.42 121.46 47.7 2XS7
ASG PRO A 39 8 E Strand -68.91 150.78 85.9 2XS7
ASG ASN A 40 9 E Strand 57.72 32.07 30.9 2XS7
ASG THR A 41 10 E Strand -133.53 142.47 21.8 2XS7
ASG VAL A 42 11 E Strand -123.24 126.10 0.0 2XS7
ASG PHE A 43 12 E Strand -70.74 134.30 60.7 2XS7
ASG VAL A 44 13 E Strand -127.04 115.97 0.8 2XS7
ASG GLY A 45 14 E Strand -116.68 175.11 3.1 2XS7
ASG GLY A 46 15 C Coil 72.39 28.33 44.4 2XS7
ASG ILE A 47 16 C Coil -80.60 114.47 10.1 2XS7
ASG ASP A 48 17 T Turn -82.34 168.48 53.8 2XS7
ASG VAL A 49 18 T Turn -66.89 -17.93 137.0 2XS7
ASG ARG A 50 19 T Turn -96.50 8.49 209.0 2XS7
ASG MET A 51 20 T Turn -107.04 111.36 7.5 2XS7
ASG ASP A 52 21 C Coil -95.46 171.61 90.7 2XS7
ASG GLU A 53 22 H AlphaHelix -60.01 -36.81 87.3 2XS7
ASG THR A 54 23 H AlphaHelix -66.48 -37.73 93.2 2XS7
ASG GLU A 55 24 H AlphaHelix -64.69 -41.86 69.8 2XS7
ASG ILE A 56 25 H AlphaHelix -63.92 -44.72 1.2 2XS7
ASG ARG A 57 26 H AlphaHelix -56.40 -44.12 95.0 2XS7
ASG SER A 58 27 H AlphaHelix -63.40 -37.66 81.5 2XS7
ASG PHE A 59 28 H AlphaHelix -67.72 -50.63 60.2 2XS7
ASG PHE A 60 29 H AlphaHelix -70.67 -11.83 0.0 2XS7
ASG ALA A 61 30 G 310Helix -58.04 -20.30 55.1 2XS7
ASG ARG A 62 31 G 310Helix -61.87 -21.83 176.6 2XS7
ASG TYR A 63 32 G 310Helix -98.13 -10.98 64.7 2XS7
ASG GLY A 64 33 C Coil 162.38 -176.22 20.1 2XS7
ASG SER A 65 34 C Coil -90.67 108.92 72.2 2XS7
ASG VAL A 66 35 E Strand -71.85 124.64 5.6 2XS7
ASG LYS A 67 36 E Strand -81.35 -48.37 101.9 2XS7
ASG GLU A 68 37 E Strand -152.91 139.70 96.7 2XS7
ASG VAL A 69 38 E Strand -114.79 126.80 11.7 2XS7
ASG LYS A 70 39 E Strand -129.01 113.22 104.8 2XS7
ASG ILE A 71 40 E Strand -85.08 127.07 22.6 2XS7
ASG ILE A 72 41 E Strand -77.93 123.21 38.1 2XS7
ASG THR A 73 42 E Strand -122.79 155.30 68.9 2XS7
ASG ASP A 74 43 T Turn -73.34 175.21 62.0 2XS7
ASG ARG A 75 44 T Turn -64.06 -13.83 115.5 2XS7
ASG THR A 76 45 T Turn -101.77 8.96 119.8 2XS7
ASG GLY A 77 46 T Turn 75.12 23.21 50.9 2XS7
ASG VAL A 78 47 C Coil -83.55 118.92 86.1 2XS7
ASG SER A 79 48 E Strand -61.56 143.80 50.2 2XS7
ASG LYS A 80 49 E Strand -88.93 -0.70 119.2 2XS7
ASG GLY A 81 50 E Strand 84.38 11.37 20.6 2XS7
ASG TYR A 82 51 E Strand -144.08 162.01 80.2 2XS7
ASG GLY A 83 52 E Strand -160.87 -168.27 1.2 2XS7
ASG PHE A 84 53 E Strand -139.80 140.60 54.1 2XS7
ASG VAL A 85 54 E Strand -116.95 124.35 0.6 2XS7
ASG SER A 86 55 E Strand -120.35 155.28 9.6 2XS7
ASG PHE A 87 56 E Strand -123.55 151.61 1.4 2XS7
ASG TYR A 88 57 C Coil -74.10 -39.22 157.6 2XS7
ASG ASN A 89 58 C Coil -79.96 157.69 56.5 2XS7
ASG ASP A 90 59 C Coil -69.75 130.99 141.5 2XS7
ASG VAL A 91 60 C Coil -121.89 156.83 22.6 2XS7
ASG ASP A 92 61 C Coil -90.28 94.30 92.5 2XS7
ASG VAL A 93 62 H AlphaHelix -55.21 -39.32 23.4 2XS7
ASG GLN A 94 63 H AlphaHelix -60.26 -42.00 124.7 2XS7
ASG LYS A 95 64 H AlphaHelix -69.39 -43.55 115.6 2XS7
ASG ILE A 96 65 H AlphaHelix -58.76 -39.47 5.0 2XS7
ASG VAL A 97 66 H AlphaHelix -72.68 -13.02 33.0 2XS7
ASG GLU A 98 67 H AlphaHelix -72.30 -15.21 111.1 2XS7
ASG SER A 99 68 C Coil -65.07 141.39 25.6 2XS7
ASG GLN A 100 69 C Coil -108.57 96.61 126.3 2XS7
ASG ILE A 101 70 B Bridge -106.48 123.90 4.1 2XS7
ASG ASN A 102 71 T Turn -135.67 94.25 120.0 2XS7
ASG PHE A 103 72 T Turn -85.78 -47.73 53.2 2XS7
ASG HIS A 104 73 T Turn -122.22 26.53 84.0 2XS7
ASG GLY A 105 74 T Turn 101.39 -1.15 77.6 2XS7
ASG LYS A 106 75 T Turn -133.82 144.16 67.1 2XS7
ASG LYS A 107 76 C Coil -71.48 130.95 115.4 2XS7
ASG LEU A 108 77 B Bridge -67.13 150.22 5.5 2XS7
ASG LYS A 109 78 E Strand -100.48 108.01 144.0 2XS7
ASG LEU A 110 79 E Strand -105.47 150.47 35.2 2XS7
ASG GLY A 111 80 E Strand -160.68 168.90 12.8 2XS7
ASG PRO A 112 81 E Strand -56.83 149.25 52.0 2XS7
ASG ALA A 113 82 E Strand -90.96 127.24 2.2 2XS7
ASG ILE A 114 83 E Strand -125.19 132.92 90.8 2XS7
ASG ARG A 115 84 E Strand -97.01 116.33 166.9 2XS7
ASG LYS A 116 85 E Strand -72.98 140.74 174.9 2XS7
ASG GLN A 117 86 C Coil -130.41 360.00 147.0 2XS7