Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4atk.std.txt Дата изменения: Wed Dec 19 12:53:26 2012 Дата индексирования: Sun Feb 3 22:26:07 2013 Кодировка:

REM -------------------------------------------------------------------- 4ATK
REM 4ATK
REM STRIDE: Knowledge-based secondary structure assignment 4ATK
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4ATK
REM 4ATK
REM Residue accessible surface area calculation 4ATK
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4ATK
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4ATK
REM 4ATK
REM ------------------------ General information ----------------------- 4ATK
REM 4ATK
HDR DNA BINDING PROTEIN/DNA 08-MAY-12 4ATK 4ATK
CMP MOL_ID: 1; 4ATK
CMP MOLECULE: MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR; 4ATK
CMP CHAIN: A, B; 4ATK
CMP FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 180-296; 4ATK
CMP SYNONYM: MITF; 4ATK
CMP ENGINEERED: YES; 4ATK
CMP MOL_ID: 2; 4ATK
CMP MOLECULE: 5'-D(*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP 4ATK
CMP CHAIN: C, D; 4ATK
CMP SYNONYM: E-BOX SEQUENCE 4ATK
SRC MOL_ID: 1; 4ATK
SRC ORGANISM_SCIENTIFIC: MUS MUSCULUS; 4ATK
SRC ORGANISM_COMMON: HOUSE MOUSE; 4ATK
SRC ORGANISM_TAXID: 10090; 4ATK
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4ATK
SRC EXPRESSION_SYSTEM_TAXID: 469008; 4ATK
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 4ATK
SRC EXPRESSION_SYSTEM_VARIANT: RIL; 4ATK
SRC EXPRESSION_SYSTEM_PLASMID: PETM11; 4ATK
SRC MOL_ID: 2; 4ATK
SRC SYNTHETIC: YES; 4ATK
SRC ORGANISM_SCIENTIFIC: MUS MUSCULUS; 4ATK
SRC ORGANISM_COMMON: HOUSE MOUSE; 4ATK
SRC ORGANISM_TAXID: 10090; 4ATK
SRC OTHER_DETAILS: SYNTHETIC 4ATK
AUT V.POGENBERG,V.DEINEKO,M.WILMANNS 4ATK
REM 4ATK
REM -------------------- Secondary structure summary ------------------- 4ATK
REM 4ATK
CHN /data/npidb/pdb/pdb_new/all/pdb4atk.pdb A 4ATK
REM 4ATK
REM . . . . . 4ATK
SEQ 1 DNHNLIERRRRFNINDRIKELGTLIPKDPDMRWNKGTILKASVDYIRKLQ 50 4ATK
STR HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH 4ATK
REM 4ATK
REM . 4ATK
SEQ 51 REQQRAKDLE 60 4ATK
STR HHHHHHHHH 4ATK
REM 4ATK
CHN /data/npidb/pdb/pdb_new/all/pdb4atk.pdb B 4ATK
REM 4ATK
REM . . . . . 4ATK
SEQ 1 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYI 50 4ATK
STR HHHHHHHHHHHHHHHHHHHHHHHHHH TTTTTTT HHHHHHHHHHHH 4ATK
REM 4ATK
REM . 4ATK
SEQ 51 RKLQREQQRA 60 4ATK
STR HHHHHHHHH 4ATK
REM 4ATK
REM 4ATK
REM 4ATK
LOC AlphaHelix ASN 208 A LEU 230 A 4ATK
LOC AlphaHelix LYS 243 A LEU 267 A 4ATK
LOC AlphaHelix LYS 205 B LEU 230 B 4ATK
LOC AlphaHelix LYS 243 B ARG 263 B 4ATK
LOC TurnIV LYS 233 B ASP 236 B 4ATK
LOC TurnVIII ASP 236 B MET 239 B 4ATK
REM 4ATK
REM --------------- Detailed secondary structure assignment------------- 4ATK
REM 4ATK
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4ATK
ASG ASP A 207 1 C Coil 360.00 102.63 102.8 4ATK
ASG ASN A 208 2 H AlphaHelix -60.37 -49.67 91.3 4ATK
ASG HIS A 209 3 H AlphaHelix -65.11 -54.64 125.5 4ATK
ASG ASN A 210 4 H AlphaHelix -47.81 -40.77 119.9 4ATK
ASG LEU A 211 5 H AlphaHelix -66.90 -56.71 96.4 4ATK
ASG ILE A 212 6 H AlphaHelix -50.44 -45.89 77.2 4ATK
ASG GLU A 213 7 H AlphaHelix -66.66 -30.86 79.6 4ATK
ASG ARG A 214 8 H AlphaHelix -48.19 -46.50 157.6 4ATK
ASG ARG A 215 9 H AlphaHelix -60.43 -53.07 148.7 4ATK
ASG ARG A 216 10 H AlphaHelix -46.92 -52.02 93.1 4ATK
ASG ARG A 217 11 H AlphaHelix -57.21 -58.70 106.2 4ATK
ASG PHE A 218 12 H AlphaHelix -49.58 -48.13 119.3 4ATK
ASG ASN A 219 13 H AlphaHelix -45.59 -67.54 50.9 4ATK
ASG ILE A 220 14 H AlphaHelix -54.14 -53.90 11.0 4ATK
ASG ASN A 221 15 H AlphaHelix -50.58 -54.90 46.8 4ATK
ASG ASP A 222 16 H AlphaHelix -51.70 -51.42 87.7 4ATK
ASG ARG A 223 17 H AlphaHelix -54.16 -57.29 68.5 4ATK
ASG ILE A 224 18 H AlphaHelix -50.47 -46.90 6.4 4ATK
ASG LYS A 225 19 H AlphaHelix -48.22 -45.17 125.9 4ATK
ASG GLU A 226 20 H AlphaHelix -53.18 -50.68 70.9 4ATK
ASG LEU A 227 21 H AlphaHelix -47.89 -43.63 0.6 4ATK
ASG GLY A 228 22 H AlphaHelix -65.33 -31.58 19.8 4ATK
ASG THR A 229 23 H AlphaHelix -63.69 -26.20 117.7 4ATK
ASG LEU A 230 24 H AlphaHelix -76.85 -35.32 23.3 4ATK
ASG ILE A 231 25 C Coil -90.22 146.44 11.7 4ATK
ASG PRO A 232 26 C Coil -60.67 129.58 88.3 4ATK
ASG LYS A 233 27 C Coil -117.45 360.00 224.5 4ATK
ASG ASP A 236 28 C Coil 360.00 -46.61 203.9 4ATK
ASG PRO A 237 29 C Coil -64.96 164.28 99.6 4ATK
ASG ASP A 238 30 C Coil -94.46 112.96 158.9 4ATK
ASG MET A 239 31 C Coil -148.73 154.49 113.7 4ATK
ASG ARG A 240 32 C Coil -55.03 142.96 189.4 4ATK
ASG TRP A 241 33 C Coil -105.68 107.61 105.1 4ATK
ASG ASN A 242 34 C Coil -147.04 178.50 64.8 4ATK
ASG LYS A 243 35 H AlphaHelix -47.98 -47.11 74.2 4ATK
ASG GLY A 244 36 H AlphaHelix -65.74 -56.95 23.2 4ATK
ASG THR A 245 37 H AlphaHelix -52.37 -41.23 30.5 4ATK
ASG ILE A 246 38 H AlphaHelix -73.41 -45.87 21.0 4ATK
ASG LEU A 247 39 H AlphaHelix -61.53 -57.16 0.2 4ATK
ASG LYS A 248 40 H AlphaHelix -50.35 -50.60 96.4 4ATK
ASG ALA A 249 41 H AlphaHelix -49.45 -50.96 18.6 4ATK
ASG SER A 250 42 H AlphaHelix -53.50 -41.27 0.0 4ATK
ASG VAL A 251 43 H AlphaHelix -59.50 -53.95 7.0 4ATK
ASG ASP A 252 44 H AlphaHelix -48.84 -54.57 98.0 4ATK
ASG TYR A 253 45 H AlphaHelix -55.43 -44.79 47.5 4ATK
ASG ILE A 254 46 H AlphaHelix -62.16 -53.46 0.0 4ATK
ASG ARG A 255 47 H AlphaHelix -57.13 -49.42 72.4 4ATK
ASG LYS A 256 48 H AlphaHelix -51.24 -52.71 109.4 4ATK
ASG LEU A 257 49 H AlphaHelix -52.41 -37.96 4.3 4ATK
ASG GLN A 258 50 H AlphaHelix -64.46 -48.91 64.7 4ATK
ASG ARG A 259 51 H AlphaHelix -51.58 -54.36 142.8 4ATK
ASG GLU A 260 52 H AlphaHelix -51.18 -49.31 106.7 4ATK
ASG GLN A 261 53 H AlphaHelix -51.59 -51.72 50.2 4ATK
ASG GLN A 262 54 H AlphaHelix -63.27 -46.42 88.0 4ATK
ASG ARG A 263 55 H AlphaHelix -50.63 -44.77 154.8 4ATK
ASG ALA A 264 56 H AlphaHelix -50.50 -49.90 28.7 4ATK
ASG LYS A 265 57 H AlphaHelix -50.07 -51.40 148.3 4ATK
ASG ASP A 266 58 H AlphaHelix -60.91 -13.74 96.7 4ATK
ASG LEU A 267 59 H AlphaHelix -90.75 7.19 133.4 4ATK
ASG GLU A 268 60 C Coil -110.66 360.00 228.3 4ATK
ASG LYS B 205 1 H AlphaHelix 360.00 -114.78 125.5 4ATK
ASG LYS B 206 2 H AlphaHelix -54.88 -33.87 71.7 4ATK
ASG ASP B 207 3 H AlphaHelix -47.90 -51.22 70.0 4ATK
ASG ASN B 208 4 H AlphaHelix -57.03 -51.78 118.9 4ATK
ASG HIS B 209 5 H AlphaHelix -47.50 -39.53 127.0 4ATK
ASG ASN B 210 6 H AlphaHelix -59.58 -49.56 83.8 4ATK
ASG LEU B 211 7 H AlphaHelix -48.45 -48.80 64.7 4ATK
ASG ILE B 212 8 H AlphaHelix -53.38 -64.22 104.1 4ATK
ASG GLU B 213 9 H AlphaHelix -48.01 -50.94 66.0 4ATK
ASG ARG B 214 10 H AlphaHelix -52.84 -41.83 116.4 4ATK
ASG ARG B 215 11 H AlphaHelix -64.40 -42.68 164.2 4ATK
ASG ARG B 216 12 H AlphaHelix -59.22 -56.20 114.4 4ATK
ASG ARG B 217 13 H AlphaHelix -46.13 -49.49 83.0 4ATK
ASG PHE B 218 14 H AlphaHelix -62.34 -50.63 122.9 4ATK
ASG ASN B 219 15 H AlphaHelix -48.42 -54.27 66.5 4ATK
ASG ILE B 220 16 H AlphaHelix -54.56 -57.50 18.8 4ATK
ASG ASN B 221 17 H AlphaHelix -48.77 -44.79 39.7 4ATK
ASG ASP B 222 18 H AlphaHelix -62.67 -57.73 81.7 4ATK
ASG ARG B 223 19 H AlphaHelix -47.85 -41.16 67.1 4ATK
ASG ILE B 224 20 H AlphaHelix -51.35 -53.21 7.0 4ATK
ASG LYS B 225 21 H AlphaHelix -49.72 -50.71 137.6 4ATK
ASG GLU B 226 22 H AlphaHelix -51.30 -47.60 66.2 4ATK
ASG LEU B 227 23 H AlphaHelix -49.28 -50.47 0.0 4ATK
ASG GLY B 228 24 H AlphaHelix -49.93 -39.95 4.1 4ATK
ASG THR B 229 25 H AlphaHelix -55.75 -46.12 105.9 4ATK
ASG LEU B 230 26 H AlphaHelix -72.84 -49.40 19.5 4ATK
ASG ILE B 231 27 C Coil -54.37 156.30 15.7 4ATK
ASG PRO B 232 28 C Coil -76.67 83.40 80.8 4ATK
ASG LYS B 233 29 T Turn -83.91 -4.10 58.7 4ATK
ASG SER B 234 30 T Turn -50.13 -53.71 109.3 4ATK
ASG ASN B 235 31 T Turn -68.19 -46.66 147.6 4ATK
ASG ASP B 236 32 T Turn -56.70 127.58 67.2 4ATK
ASG PRO B 237 33 T Turn -62.95 -48.49 120.7 4ATK
ASG ASP B 238 34 T Turn -154.22 145.65 133.4 4ATK
ASG MET B 239 35 T Turn -153.70 153.39 126.2 4ATK
ASG ARG B 240 36 C Coil -66.64 130.86 68.1 4ATK
ASG TRP B 241 37 C Coil -104.18 109.47 100.2 4ATK
ASG ASN B 242 38 C Coil -135.25 166.44 73.3 4ATK
ASG LYS B 243 39 H AlphaHelix -51.10 -58.05 58.2 4ATK
ASG GLY B 244 40 H AlphaHelix -51.23 -51.91 4.8 4ATK
ASG THR B 245 41 H AlphaHelix -62.21 -51.99 24.4 4ATK
ASG ILE B 246 42 H AlphaHelix -48.20 -48.64 16.5 4ATK
ASG LEU B 247 43 H AlphaHelix -63.68 -47.00 0.4 4ATK
ASG LYS B 248 44 H AlphaHelix -57.61 -50.93 66.9 4ATK
ASG ALA B 249 45 H AlphaHelix -63.54 -30.50 36.2 4ATK
ASG SER B 250 46 H AlphaHelix -68.97 -50.91 0.0 4ATK
ASG VAL B 251 47 H AlphaHelix -51.10 -55.98 1.8 4ATK
ASG ASP B 252 48 H AlphaHelix -50.13 -33.89 95.0 4ATK
ASG TYR B 253 49 H AlphaHelix -65.61 -55.97 37.2 4ATK
ASG ILE B 254 50 H AlphaHelix -53.65 -45.10 0.0 4ATK
ASG ARG B 255 51 H AlphaHelix -52.53 -63.79 161.5 4ATK
ASG LYS B 256 52 H AlphaHelix -52.60 -38.24 115.1 4ATK
ASG LEU B 257 53 H AlphaHelix -64.85 -45.77 12.2 4ATK
ASG GLN B 258 54 H AlphaHelix -56.66 -47.90 44.7 4ATK
ASG ARG B 259 55 H AlphaHelix -56.84 -53.11 113.3 4ATK
ASG GLU B 260 56 H AlphaHelix -71.15 -10.99 68.9 4ATK
ASG GLN B 261 57 H AlphaHelix -80.71 -42.64 26.3 4ATK
ASG GLN B 262 58 H AlphaHelix -50.10 -33.18 171.2 4ATK
ASG ARG B 263 59 H AlphaHelix -73.00 -43.62 196.8 4ATK
ASG ALA B 264 60 C Coil -72.18 360.00 87.1 4ATK