Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4fth.std.txt Дата изменения: Mon Sep 17 16:50:20 2012 Дата индексирования: Tue Oct 2 12:47:14 2012 Кодировка:

REM -------------------------------------------------------------------- 4FTH
REM 4FTH
REM STRIDE: Knowledge-based secondary structure assignment 4FTH
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4FTH
REM 4FTH
REM Residue accessible surface area calculation 4FTH
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4FTH
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4FTH
REM 4FTH
REM ------------------------ General information ----------------------- 4FTH
REM 4FTH
HDR TRANSCRIPTION REGULATOR/DNA 27-JUN-12 4FTH 4FTH
CMP MOL_ID: 1; 4FTH
CMP MOLECULE: TRANSCRIPTIONAL REGULATOR (NTRC FAMILY); 4FTH
CMP CHAIN: A, B; 4FTH
CMP FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 374-442); 4FTH
CMP ENGINEERED: YES; 4FTH
CMP MOL_ID: 2; 4FTH
CMP MOLECULE: 5'-D(*AP*CP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP 4FTH
CMP *GP*CP*AP*T)-3'; 4FTH
CMP CHAIN: C; 4FTH
CMP ENGINEERED: YES; 4FTH
CMP OTHER_DETAILS: LPXC UPSTREAM DNA-BINDING SITE, FORWARD STRAN 4FTH
CMP MOL_ID: 3; 4FTH
CMP MOLECULE: 5'-D(P*GP*AP*TP*GP*CP*AP*TP*TP*TP*GP*CP*AP*AP*AP*T 4FTH
CMP P*CP*AP*A)-3'; 4FTH
CMP CHAIN: D; 4FTH
CMP ENGINEERED: YES; 4FTH
CMP OTHER_DETAILS: LPXC UPSTREAM DNA-BINDING SITE, REVERSE STRAN 4FTH
SRC MOL_ID: 1; 4FTH
SRC ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; 4FTH
SRC ORGANISM_TAXID: 63363; 4FTH
SRC GENE: AQ_164, NTRC4; 4FTH
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4FTH
SRC EXPRESSION_SYSTEM_TAXID: 562; 4FTH
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4FTH
SRC EXPRESSION_SYSTEM_PLASMID: ROSETTA.PLYSS; 4FTH
SRC MOL_ID: 2; 4FTH
SRC SYNTHETIC: YES; 4FTH
SRC MOL_ID: 3; 4FTH
SRC SYNTHETIC: YES 4FTH
AUT N.K.VIDANGOS,J.HEIDEKER,A.Y.LYUBIMOV,M.LAMERS,Y.HUO,J.G.PELTO 4FTH
AUT J.D.GRALLA,J.KURIYAN,J.M.BERGER,D.E.WEMMER 4FTH
REM 4FTH
REM -------------------- Secondary structure summary ------------------- 4FTH
REM 4FTH
CHN /data/npidb/pdb/pdb_new/all/pdb4fth.pdb A 4FTH
REM 4FTH
REM . . . . . 4FTH
SEQ 1 LKEKSWRDLSYLLKIKELKEAKKEFEKIFIEEKLREYDYDLKRTAEEIGI 50 4FTH
STR TTTTTTT HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH 4FTH
REM 4FTH
REM . 4FTH
SEQ 51 DLSNLYRKIKSLNIRVKS 68 4FTH
STR HHHHHHHHHHH 4FTH
REM 4FTH
CHN /data/npidb/pdb/pdb_new/all/pdb4fth.pdb B 4FTH
REM 4FTH
REM . . . . . 4FTH
SEQ 1 RDLSYLLKIKELKEAKKEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLY 50 4FTH
STR GGGG HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH HHHHH 4FTH
REM 4FTH
REM . 4FTH
SEQ 51 RKIKSLNIRVK 61 4FTH
STR HHHHHH TTT 4FTH
REM 4FTH
REM 4FTH
REM 4FTH
LOC AlphaHelix LEU 28 A TYR 47 A 4FTH
LOC AlphaHelix LEU 51 A ILE 58 A 4FTH
LOC AlphaHelix LEU 62 A LEU 72 A 4FTH
LOC AlphaHelix LEU 28 B TYR 47 B 4FTH
LOC AlphaHelix LEU 51 B ILE 58 B 4FTH
LOC AlphaHelix LEU 62 B LEU 72 B 4FTH
LOC 310Helix SER 20 B LEU 23 B 4FTH
LOC TurnI LEU 19 A LEU 22 A 4FTH
LOC TurnI SER 20 A LEU 23 A 4FTH
LOC TurnI TYR 21 A LYS 24 A 4FTH
LOC TurnI LEU 22 A ILE 25 A 4FTH
LOC TurnI' TYR 47 A ASP 50 A 4FTH
LOC TurnI' TYR 47 B ASP 50 B 4FTH
LOC GammaInv ARG 75 B LYS 77 B 4FTH
REM 4FTH
REM --------------- Detailed secondary structure assignment------------- 4FTH
REM 4FTH
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4FTH
ASG LEU A 11 1 C Coil 360.00 143.47 230.0 4FTH
ASG LYS A 12 2 C Coil -85.84 139.92 210.3 4FTH
ASG GLU A 13 3 C Coil -116.05 143.54 163.0 4FTH
ASG LYS A 14 4 C Coil -60.84 152.37 74.4 4FTH
ASG SER A 15 5 C Coil -79.37 133.72 122.2 4FTH
ASG TRP A 16 6 C Coil -108.92 159.78 78.5 4FTH
ASG ARG A 17 7 C Coil -74.50 152.46 67.0 4FTH
ASG ASP A 18 8 C Coil -96.50 114.02 105.4 4FTH
ASG LEU A 19 9 T Turn -108.26 35.40 3.7 4FTH
ASG SER A 20 10 T Turn -73.16 -7.26 38.7 4FTH
ASG TYR A 21 11 T Turn -89.98 -26.75 74.4 4FTH
ASG LEU A 22 12 T Turn -60.26 -26.27 0.4 4FTH
ASG LEU A 23 13 T Turn -82.99 -5.16 26.7 4FTH
ASG LYS A 24 14 T Turn -95.43 -20.14 158.8 4FTH
ASG ILE A 25 15 T Turn -57.15 134.49 20.9 4FTH
ASG LYS A 26 16 C Coil -71.77 -45.95 96.6 4FTH
ASG GLU A 27 17 C Coil -91.95 135.66 72.8 4FTH
ASG LEU A 28 18 H AlphaHelix -64.51 -41.38 1.2 4FTH
ASG LYS A 29 19 H AlphaHelix -60.01 -36.99 119.1 4FTH
ASG GLU A 30 20 H AlphaHelix -66.12 -42.71 97.3 4FTH
ASG ALA A 31 21 H AlphaHelix -72.65 -27.82 0.0 4FTH
ASG LYS A 32 22 H AlphaHelix -68.11 -35.84 61.8 4FTH
ASG LYS A 33 23 H AlphaHelix -71.72 -43.87 122.8 4FTH
ASG GLU A 34 24 H AlphaHelix -65.07 -42.60 62.5 4FTH
ASG PHE A 35 25 H AlphaHelix -64.87 -48.99 1.6 4FTH
ASG GLU A 36 26 H AlphaHelix -57.26 -29.55 23.1 4FTH
ASG LYS A 37 27 H AlphaHelix -73.61 -52.56 53.3 4FTH
ASG ILE A 38 28 H AlphaHelix -62.65 -37.15 7.6 4FTH
ASG PHE A 39 29 H AlphaHelix -63.31 -51.45 0.3 4FTH
ASG ILE A 40 30 H AlphaHelix -63.38 -38.50 0.0 4FTH
ASG GLU A 41 31 H AlphaHelix -59.57 -48.12 40.5 4FTH
ASG GLU A 42 32 H AlphaHelix -62.50 -35.12 27.3 4FTH
ASG LYS A 43 33 H AlphaHelix -66.92 -40.96 4.0 4FTH
ASG LEU A 44 34 H AlphaHelix -58.09 -51.51 0.6 4FTH
ASG ARG A 45 35 H AlphaHelix -56.86 -48.92 127.3 4FTH
ASG GLU A 46 36 H AlphaHelix -58.29 -25.97 107.0 4FTH
ASG TYR A 47 37 H AlphaHelix -115.69 25.17 25.8 4FTH
ASG ASP A 48 38 T Turn 46.77 42.21 123.0 4FTH
ASG TYR A 49 39 T Turn 60.55 36.10 49.4 4FTH
ASG ASP A 50 40 T Turn -90.14 91.07 82.7 4FTH
ASG LEU A 51 41 H AlphaHelix -49.46 -52.81 30.7 4FTH
ASG LYS A 52 42 H AlphaHelix -52.37 -43.48 127.4 4FTH
ASG ARG A 53 43 H AlphaHelix -75.87 -40.18 120.1 4FTH
ASG THR A 54 44 H AlphaHelix -59.69 -44.42 0.0 4FTH
ASG ALA A 55 45 H AlphaHelix -63.17 -25.36 2.4 4FTH
ASG GLU A 56 46 H AlphaHelix -81.50 -40.91 112.3 4FTH
ASG GLU A 57 47 H AlphaHelix -67.02 -32.23 42.7 4FTH
ASG ILE A 58 48 H AlphaHelix -94.98 -11.24 0.5 4FTH
ASG GLY A 59 49 C Coil 79.84 44.05 43.5 4FTH
ASG ILE A 60 50 C Coil -133.14 165.43 39.7 4FTH
ASG ASP A 61 51 C Coil -77.50 138.73 105.6 4FTH
ASG LEU A 62 52 H AlphaHelix -54.29 -34.01 56.5 4FTH
ASG SER A 63 53 H AlphaHelix -62.91 -41.94 50.0 4FTH
ASG ASN A 64 54 H AlphaHelix -66.22 -37.15 61.3 4FTH
ASG LEU A 65 55 H AlphaHelix -60.64 -42.56 0.2 4FTH
ASG TYR A 66 56 H AlphaHelix -63.50 -43.47 115.8 4FTH
ASG ARG A 67 57 H AlphaHelix -66.14 -31.81 132.9 4FTH
ASG LYS A 68 58 H AlphaHelix -72.36 -40.84 39.6 4FTH
ASG ILE A 69 59 H AlphaHelix -60.43 -40.71 23.0 4FTH
ASG LYS A 70 60 H AlphaHelix -64.37 -42.62 142.6 4FTH
ASG SER A 71 61 H AlphaHelix -73.11 -48.82 91.6 4FTH
ASG LEU A 72 62 H AlphaHelix -81.77 2.60 20.5 4FTH
ASG ASN A 73 63 C Coil 53.43 43.64 127.9 4FTH
ASG ILE A 74 64 C Coil -81.90 135.61 11.5 4FTH
ASG ARG A 75 65 C Coil -108.26 149.26 221.4 4FTH
ASG VAL A 76 66 C Coil -115.36 160.24 73.0 4FTH
ASG LYS A 77 67 C Coil -70.41 -47.47 156.8 4FTH
ASG SER A 78 68 C Coil -134.32 360.00 157.2 4FTH
ASG ARG B 17 1 C Coil 360.00 152.51 86.4 4FTH
ASG ASP B 18 2 C Coil -108.95 115.35 120.4 4FTH
ASG LEU B 19 3 C Coil -116.03 25.56 10.4 4FTH
ASG SER B 20 4 G 310Helix -63.75 -20.39 30.6 4FTH
ASG TYR B 21 5 G 310Helix -77.72 -22.72 80.7 4FTH
ASG LEU B 22 6 G 310Helix -67.34 -32.55 0.8 4FTH
ASG LEU B 23 7 G 310Helix -79.85 -13.70 1.7 4FTH
ASG LYS B 24 8 C Coil -89.34 -12.68 117.2 4FTH
ASG ILE B 25 9 C Coil -69.44 128.06 24.5 4FTH
ASG LYS B 26 10 C Coil -66.19 -45.40 97.5 4FTH
ASG GLU B 27 11 C Coil -99.64 139.73 77.0 4FTH
ASG LEU B 28 12 H AlphaHelix -65.60 -37.53 3.2 4FTH
ASG LYS B 29 13 H AlphaHelix -65.93 -22.71 141.0 4FTH
ASG GLU B 30 14 H AlphaHelix -80.76 -47.81 108.9 4FTH
ASG ALA B 31 15 H AlphaHelix -59.55 -36.73 0.0 4FTH
ASG LYS B 32 16 H AlphaHelix -68.03 -32.40 66.8 4FTH
ASG LYS B 33 17 H AlphaHelix -86.49 -26.24 115.8 4FTH
ASG GLU B 34 18 H AlphaHelix -76.12 -46.29 68.7 4FTH
ASG PHE B 35 19 H AlphaHelix -60.23 -49.63 3.0 4FTH
ASG GLU B 36 20 H AlphaHelix -56.14 -30.83 20.0 4FTH
ASG LYS B 37 21 H AlphaHelix -73.36 -51.98 52.9 4FTH
ASG ILE B 38 22 H AlphaHelix -64.36 -36.36 27.3 4FTH
ASG PHE B 39 23 H AlphaHelix -62.50 -52.73 0.0 4FTH
ASG ILE B 40 24 H AlphaHelix -61.99 -41.00 0.0 4FTH
ASG GLU B 41 25 H AlphaHelix -57.00 -50.08 37.3 4FTH
ASG GLU B 42 26 H AlphaHelix -60.63 -35.74 62.2 4FTH
ASG LYS B 43 27 H AlphaHelix -66.88 -43.67 7.0 4FTH
ASG LEU B 44 28 H AlphaHelix -57.86 -35.22 0.2 4FTH
ASG ARG B 45 29 H AlphaHelix -73.03 -45.17 119.7 4FTH
ASG GLU B 46 30 H AlphaHelix -64.04 -18.74 129.8 4FTH
ASG TYR B 47 31 H AlphaHelix -118.49 25.49 25.1 4FTH
ASG ASP B 48 32 T Turn 47.97 35.62 140.8 4FTH
ASG TYR B 49 33 T Turn 63.26 34.21 52.3 4FTH
ASG ASP B 50 34 T Turn -89.48 88.01 72.5 4FTH
ASG LEU B 51 35 H AlphaHelix -48.45 -52.19 26.5 4FTH
ASG LYS B 52 36 H AlphaHelix -47.59 -42.48 118.3 4FTH
ASG ARG B 53 37 H AlphaHelix -85.51 -27.61 100.8 4FTH
ASG THR B 54 38 H AlphaHelix -67.03 -53.79 0.0 4FTH
ASG ALA B 55 39 H AlphaHelix -60.02 -10.81 1.9 4FTH
ASG GLU B 56 40 H AlphaHelix -94.70 -39.85 114.0 4FTH
ASG GLU B 57 41 H AlphaHelix -73.41 -22.64 50.7 4FTH
ASG ILE B 58 42 H AlphaHelix -102.59 -10.95 0.0 4FTH
ASG GLY B 59 43 C Coil 83.69 43.70 27.6 4FTH
ASG ILE B 60 44 C Coil -131.26 176.93 24.9 4FTH
ASG ASP B 61 45 C Coil -88.39 136.83 94.6 4FTH
ASG LEU B 62 46 H AlphaHelix -54.79 -37.33 57.7 4FTH
ASG SER B 63 47 H AlphaHelix -61.59 -32.75 55.0 4FTH
ASG ASN B 64 48 H AlphaHelix -80.84 -23.42 67.1 4FTH
ASG LEU B 65 49 H AlphaHelix -67.51 -46.49 0.2 4FTH
ASG TYR B 66 50 H AlphaHelix -59.75 -43.00 115.8 4FTH
ASG ARG B 67 51 H AlphaHelix -59.86 -41.88 153.7 4FTH
ASG LYS B 68 52 H AlphaHelix -68.39 -30.61 39.2 4FTH
ASG ILE B 69 53 H AlphaHelix -69.96 -36.93 20.4 4FTH
ASG LYS B 70 54 H AlphaHelix -74.36 -33.71 165.9 4FTH
ASG SER B 71 55 H AlphaHelix -78.24 -48.95 95.0 4FTH
ASG LEU B 72 56 H AlphaHelix -88.11 0.45 25.4 4FTH
ASG ASN B 73 57 C Coil 55.75 69.21 120.7 4FTH
ASG ILE B 74 58 C Coil -104.83 131.40 12.1 4FTH
ASG ARG B 75 59 T Turn -92.56 115.52 179.4 4FTH
ASG VAL B 76 60 T Turn -86.27 73.60 73.1 4FTH
ASG LYS B 77 61 T Turn -62.38 360.00 163.0 4FTH