Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4lvi.std.txt Дата изменения: Thu Nov 6 21:41:47 2014 Дата индексирования: Sun Apr 10 18:23:13 2016 Кодировка:

REM -------------------------------------------------------------------- 4LVI
REM 4LVI
REM STRIDE: Knowledge-based secondary structure assignment 4LVI
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4LVI
REM 4LVI
REM Residue accessible surface area calculation 4LVI
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4LVI
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4LVI
REM 4LVI
REM ------------------------ General information ----------------------- 4LVI
REM 4LVI
HDR DNA BINDING PROTEIN/DNA 26-JUL-13 4LVI 4LVI
CMP MOL_ID: 1; 4LVI
CMP MOLECULE: PLASMID RECOMBINATION ENZYME; 4LVI
CMP CHAIN: A; 4LVI
CMP FRAGMENT: RELAXASE DOMAIN OF MOBM PROTEIN; 4LVI
CMP SYNONYM: MOBILIZATION PROTEIN; 4LVI
CMP ENGINEERED: YES; 4LVI
CMP MOL_ID: 2; 4LVI
CMP MOLECULE: ACTTTAT OLIGONUCLEOTIDE; 4LVI
CMP CHAIN: B; 4LVI
CMP FRAGMENT: OLIGONUCLEOTIDE_1 MIMICKING PMV158 ORIT DNA HAIRPI 4LVI
CMP ENGINEERED: YES; 4LVI
CMP MOL_ID: 3; 4LVI
CMP MOLECULE: ATAAAGTATAGTGTG OLIGONUCLEOTIDE; 4LVI
CMP CHAIN: C; 4LVI
CMP FRAGMENT: OLIGONUCLEOTIDE_2 MIMICKING PMV158 ORIT DNA HAIRPI 4LVI
CMP ENGINEERED: YES 4LVI
SRC MOL_ID: 1; 4LVI
SRC ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; 4LVI
SRC ORGANISM_TAXID: 1311; 4LVI
SRC GENE: PRE, MOB; 4LVI
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4LVI
SRC EXPRESSION_SYSTEM_TAXID: 469008; 4LVI
SRC EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); 4LVI
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4LVI
SRC EXPRESSION_SYSTEM_PLASMID: PQE-1; 4LVI
SRC MOL_ID: 2; 4LVI
SRC SYNTHETIC: YES; 4LVI
SRC OTHER_DETAILS: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS ( 4LVI
SRC GERMANY).; 4LVI
SRC MOL_ID: 3; 4LVI
SRC SYNTHETIC: YES; 4LVI
SRC OTHER_DETAILS: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS ( 4LVI
SRC GERMANY). 4LVI
AUT R.PLUTA,D.R.BOER,M.COLL 4LVI
REM 4LVI
REM -------------------- Secondary structure summary ------------------- 4LVI
REM 4LVI
CHN /data/npidb/pdb/pdb_new/all/pdb4lvi.pdb A 4LVI
REM 4LVI
REM . . . . . 4LVI
SEQ 1 SYMVARMQKMKAGNLGGAFKHNERVSNKDINPSRSHLNYELTDRDRSVSY 50 4LVI
STR B EEEEEEEEGGGHHHHHHHHH TTTT GGGGGG EE TTTT H 4LVI
REM 4LVI
REM . . . . . 4LVI
SEQ 51 EKQIKDYVNENKVSNRAIRKDAVLCDEWIITSDKDFFEKLDEEQTRTFFE 100 4LVI
STR HHHHHHHHHH TTTTEEEEEEEEE HHHHHH HHHHHHHHH 4LVI
REM 4LVI
REM . . . . . 4LVI
SEQ 101 TAKNYFAENYGESNIAYASVHLDESTPHMHMGVVPFENGKLSSKAMFDRE 150 4LVI
STR HHHHHHHHHH GGGEEEEEEETTT EEEEEETTEETTEE HHHH HH 4LVI
REM 4LVI
REM . . . . 4LVI
SEQ 151 ELKHIQEDLPRYMSDHGFELERGKLNSEAKHKTVAEFKRA 190 4LVI
STR HHHHHHHHHHHHHHHH TTTB TTTT HHHHHH 4LVI
REM 4LVI
REM 4LVI
REM 4LVI
LOC AlphaHelix LEU 16 A GLU 24 A 4LVI
LOC AlphaHelix TYR 55 A GLU 65 A 4LVI
LOC AlphaHelix LYS 89 A LYS 94 A 4LVI
LOC AlphaHelix GLU 97 A TYR 115 A 4LVI
LOC AlphaHelix SER 148 A MET 151 A 4LVI
LOC AlphaHelix ARG 154 A HIS 171 A 4LVI
LOC AlphaHelix VAL 189 A ARG 194 A 4LVI
LOC 310Helix ALA 13 A ASN 15 A 4LVI
LOC 310Helix PRO 37 A LEU 42 A 4LVI
LOC 310Helix GLU 117 A ASN 119 A 4LVI
LOC Strand VAL 5 A LYS 12 A 4LVI
LOC Strand TYR 44 A GLU 45 A 4LVI
LOC Strand VAL 78 A THR 86 A 4LVI
LOC Strand ILE 120 A HIS 126 A 4LVI
LOC Strand HIS 133 A VAL 138 A 4LVI
LOC Strand PHE 141 A GLU 142 A 4LVI
LOC Strand LYS 145 A LEU 146 A 4LVI
LOC TurnI ASN 32 A ILE 35 A 4LVI
LOC TurnI ASP 50 A VAL 53 A 4LVI
LOC TurnI ARG 74 A ALA 77 A 4LVI
LOC TurnIV HIS 126 A GLU 129 A 4LVI
LOC TurnIV PHE 141 A GLY 144 A 4LVI
LOC TurnI' GLU 142 A LYS 145 A 4LVI
LOC TurnII LYS 179 A SER 182 A 4LVI
LOC GammaInv VAL 139 A PHE 141 A 4LVI
LOC GammaInv PHE 173 A LEU 175 A 4LVI
REM 4LVI
REM --------------- Detailed secondary structure assignment------------- 4LVI
REM 4LVI
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4LVI
ASG SER A 2 1 C Coil 360.00 154.69 58.5 4LVI
ASG TYR A 3 2 B Bridge -93.59 140.95 100.9 4LVI
ASG MET A 4 3 C Coil -67.07 128.37 6.5 4LVI
ASG VAL A 5 4 E Strand -105.52 119.08 58.1 4LVI
ASG ALA A 6 5 E Strand -140.32 127.12 6.6 4LVI
ASG ARG A 7 6 E Strand -160.62 134.38 105.8 4LVI
ASG MET A 8 7 E Strand -106.84 152.53 26.0 4LVI
ASG GLN A 9 8 E Strand -127.15 140.11 107.3 4LVI
ASG LYS A 10 9 E Strand -83.01 132.75 125.6 4LVI
ASG MET A 11 10 E Strand -111.37 119.04 5.6 4LVI
ASG LYS A 12 11 E Strand -91.74 169.91 76.8 4LVI
ASG ALA A 13 12 G 310Helix -40.29 -46.25 22.4 4LVI
ASG GLY A 14 13 G 310Helix -71.04 -13.67 77.4 4LVI
ASG ASN A 15 14 G 310Helix -121.65 5.50 56.9 4LVI
ASG LEU A 16 15 H AlphaHelix -75.89 -19.61 1.4 4LVI
ASG GLY A 17 16 H AlphaHelix -63.92 -55.90 37.6 4LVI
ASG GLY A 18 17 H AlphaHelix -63.41 -39.15 48.8 4LVI
ASG ALA A 19 18 H AlphaHelix -60.29 -41.25 10.9 4LVI
ASG PHE A 20 19 H AlphaHelix -68.76 -44.46 31.1 4LVI
ASG LYS A 21 20 H AlphaHelix -63.75 -40.21 124.6 4LVI
ASG HIS A 22 21 H AlphaHelix -66.67 -52.34 61.5 4LVI
ASG ASN A 23 22 H AlphaHelix -69.96 -34.37 5.0 4LVI
ASG GLU A 24 23 H AlphaHelix -89.24 5.24 19.5 4LVI
ASG ARG A 25 24 C Coil 47.96 48.19 54.0 4LVI
ASG VAL A 26 25 C Coil -81.17 360.00 112.8 4LVI
ASG SER A 31 26 C Coil 360.00 7.03 158.1 4LVI
ASG ASN A 32 27 T Turn -73.88 148.71 67.8 4LVI
ASG LYS A 33 28 T Turn -44.77 -43.05 203.9 4LVI
ASG ASP A 34 29 T Turn -91.37 -1.99 60.6 4LVI
ASG ILE A 35 30 T Turn -87.70 128.35 27.3 4LVI
ASG ASN A 36 31 C Coil -97.18 106.25 71.3 4LVI
ASG PRO A 37 32 G 310Helix -62.82 -24.12 99.9 4LVI
ASG SER A 38 33 G 310Helix -67.33 -23.21 91.0 4LVI
ASG ARG A 39 34 G 310Helix -92.36 -5.90 104.2 4LVI
ASG SER A 40 35 G 310Helix -63.30 -34.31 32.8 4LVI
ASG HIS A 41 36 G 310Helix -70.08 -21.05 151.0 4LVI
ASG LEU A 42 37 G 310Helix -68.96 -17.07 55.8 4LVI
ASG ASN A 43 38 C Coil -67.47 161.64 28.9 4LVI
ASG TYR A 44 39 E Strand -152.10 159.20 42.9 4LVI
ASG GLU A 45 40 E Strand -110.43 125.18 46.5 4LVI
ASG LEU A 46 41 C Coil -87.47 -16.07 21.1 4LVI
ASG THR A 47 42 C Coil -88.96 165.33 21.2 4LVI
ASG ASP A 48 43 C Coil -86.95 23.64 167.6 4LVI
ASG ARG A 49 44 C Coil -66.81 157.71 26.4 4LVI
ASG ASP A 50 45 T Turn -88.90 120.57 96.5 4LVI
ASG ARG A 51 46 T Turn -64.13 -20.93 143.1 4LVI
ASG SER A 52 47 T Turn -86.32 -1.69 103.5 4LVI
ASG VAL A 53 48 T Turn -104.10 126.43 42.8 4LVI
ASG SER A 54 49 C Coil -64.36 164.61 43.5 4LVI
ASG TYR A 55 50 H AlphaHelix -68.71 -38.90 0.2 4LVI
ASG GLU A 56 51 H AlphaHelix -61.30 -48.79 65.5 4LVI
ASG LYS A 57 52 H AlphaHelix -64.76 -46.90 113.0 4LVI
ASG GLN A 58 53 H AlphaHelix -57.52 -51.18 47.0 4LVI
ASG ILE A 59 54 H AlphaHelix -69.43 -39.75 1.2 4LVI
ASG LYS A 60 55 H AlphaHelix -67.74 -35.78 68.3 4LVI
ASG ASP A 61 56 H AlphaHelix -64.74 -49.87 55.5 4LVI
ASG TYR A 62 57 H AlphaHelix -56.42 -45.96 46.5 4LVI
ASG VAL A 63 58 H AlphaHelix -71.21 -49.96 1.4 4LVI
ASG ASN A 64 59 H AlphaHelix -56.53 -41.41 77.6 4LVI
ASG GLU A 65 60 H AlphaHelix -70.99 -14.85 145.6 4LVI
ASG ASN A 66 61 C Coil -119.22 -17.76 87.5 4LVI
ASG LYS A 67 62 C Coil -64.60 143.28 50.6 4LVI
ASG VAL A 68 63 C Coil -74.20 -48.39 104.0 4LVI
ASG SER A 69 64 C Coil -64.33 150.56 62.8 4LVI
ASG ASN A 70 65 C Coil -88.37 -11.63 161.0 4LVI
ASG ARG A 71 66 C Coil -74.36 144.90 204.6 4LVI
ASG ALA A 72 67 C Coil -60.27 143.46 78.7 4LVI
ASG ILE A 73 68 C Coil -50.02 130.73 38.3 4LVI
ASG ARG A 74 69 T Turn -70.29 144.18 172.9 4LVI
ASG LYS A 75 70 T Turn -55.95 -24.86 203.2 4LVI
ASG ASP A 76 71 T Turn -99.14 15.51 67.7 4LVI
ASG ALA A 77 72 T Turn -61.82 138.08 11.5 4LVI
ASG VAL A 78 73 E Strand -77.40 100.18 21.4 4LVI
ASG LEU A 79 74 E Strand -77.80 -31.81 3.0 4LVI
ASG CYS A 80 75 E Strand -157.95 158.31 0.0 4LVI
ASG ASP A 81 76 E Strand -101.78 112.50 0.0 4LVI
ASG GLU A 82 77 E Strand -87.74 113.71 9.6 4LVI
ASG TRP A 83 78 E Strand -91.67 128.81 1.4 4LVI
ASG ILE A 84 79 E Strand -89.00 124.31 44.7 4LVI
ASG ILE A 85 80 E Strand -117.48 123.41 0.0 4LVI
ASG THR A 86 81 E Strand -165.43 -164.92 17.2 4LVI
ASG SER A 87 82 C Coil -161.23 -159.88 8.6 4LVI
ASG ASP A 88 83 C Coil -89.06 167.11 66.0 4LVI
ASG LYS A 89 84 H AlphaHelix -53.22 -44.29 115.2 4LVI
ASG ASP A 90 85 H AlphaHelix -54.37 -36.41 89.0 4LVI
ASG PHE A 91 86 H AlphaHelix -65.20 -48.49 10.1 4LVI
ASG PHE A 92 87 H AlphaHelix -72.75 -28.38 10.9 4LVI
ASG GLU A 93 88 H AlphaHelix -60.48 -19.97 121.6 4LVI
ASG LYS A 94 89 H AlphaHelix -85.23 -4.20 148.8 4LVI
ASG LEU A 95 90 C Coil -118.33 139.17 36.8 4LVI
ASG ASP A 96 91 C Coil -81.21 -174.58 86.8 4LVI
ASG GLU A 97 92 H AlphaHelix -62.39 -46.64 158.6 4LVI
ASG GLU A 98 93 H AlphaHelix -58.04 -53.84 153.2 4LVI
ASG GLN A 99 94 H AlphaHelix -53.35 -41.49 83.2 4LVI
ASG THR A 100 95 H AlphaHelix -63.89 -54.42 13.8 4LVI
ASG ARG A 101 96 H AlphaHelix -49.62 -45.37 95.2 4LVI
ASG THR A 102 97 H AlphaHelix -62.24 -35.46 55.7 4LVI
ASG PHE A 103 98 H AlphaHelix -60.66 -46.60 0.0 4LVI
ASG PHE A 104 99 H AlphaHelix -72.09 -36.20 0.0 4LVI
ASG GLU A 105 100 H AlphaHelix -60.81 -41.66 70.8 4LVI
ASG THR A 106 101 H AlphaHelix -58.21 -46.23 12.4 4LVI
ASG ALA A 107 102 H AlphaHelix -64.41 -45.78 0.0 4LVI
ASG LYS A 108 103 H AlphaHelix -51.48 -50.73 44.9 4LVI
ASG ASN A 109 104 H AlphaHelix -52.29 -41.38 66.3 4LVI
ASG TYR A 110 105 H AlphaHelix -62.08 -42.62 0.8 4LVI
ASG PHE A 111 106 H AlphaHelix -72.95 -32.85 0.0 4LVI
ASG ALA A 112 107 H AlphaHelix -64.78 -51.13 14.1 4LVI
ASG GLU A 113 108 H AlphaHelix -65.75 -33.38 122.1 4LVI
ASG ASN A 114 109 H AlphaHelix -88.59 -31.16 77.3 4LVI
ASG TYR A 115 110 H AlphaHelix -119.32 0.29 22.4 4LVI
ASG GLY A 116 111 C Coil 108.09 119.26 29.3 4LVI
ASG GLU A 117 112 G 310Helix -52.88 -41.74 169.3 4LVI
ASG SER A 118 113 G 310Helix -82.72 -3.65 82.8 4LVI
ASG ASN A 119 114 G 310Helix -83.47 -6.04 6.8 4LVI
ASG ILE A 120 115 E Strand -86.20 97.70 14.0 4LVI
ASG ALA A 121 116 E Strand -80.78 -37.58 4.7 4LVI
ASG TYR A 122 117 E Strand -149.97 152.18 0.0 4LVI
ASG ALA A 123 118 E Strand -146.55 88.77 0.0 4LVI
ASG SER A 124 119 E Strand -104.47 112.19 4.8 4LVI
ASG VAL A 125 120 E Strand -95.20 122.52 0.0 4LVI
ASG HIS A 126 121 E Strand -108.69 115.52 0.0 4LVI
ASG LEU A 127 122 T Turn -106.44 -4.56 27.0 4LVI
ASG ASP A 128 123 T Turn -94.90 16.24 0.9 4LVI
ASG GLU A 129 124 T Turn -118.02 -160.11 44.6 4LVI
ASG SER A 130 125 C Coil -70.76 -44.99 84.9 4LVI
ASG THR A 131 126 C Coil -131.25 143.49 34.2 4LVI
ASG PRO A 132 127 C Coil -61.11 133.25 27.7 4LVI
ASG HIS A 133 128 E Strand -154.39 167.51 21.8 4LVI
ASG MET A 134 129 E Strand -125.79 136.50 0.0 4LVI
ASG HIS A 135 130 E Strand -98.11 112.82 17.0 4LVI
ASG MET A 136 131 E Strand -118.70 111.36 0.0 4LVI
ASG GLY A 137 132 E Strand -84.59 112.77 0.0 4LVI
ASG VAL A 138 133 E Strand -104.86 115.30 0.0 4LVI
ASG VAL A 139 134 T Turn -71.47 121.87 1.4 4LVI
ASG PRO A 140 135 T Turn -76.60 54.53 1.4 4LVI
ASG PHE A 141 136 E Strand -109.68 114.39 20.2 4LVI
ASG GLU A 142 137 E Strand -145.17 143.01 115.6 4LVI
ASG ASN A 143 138 T Turn 54.71 43.96 120.9 4LVI
ASG GLY A 144 139 T Turn 62.60 16.78 15.0 4LVI
ASG LYS A 145 140 E Strand -123.59 139.15 127.3 4LVI
ASG LEU A 146 141 E Strand -98.86 107.61 42.6 4LVI
ASG SER A 147 142 C Coil -158.03 100.32 40.2 4LVI
ASG SER A 148 143 H AlphaHelix -63.53 -33.51 7.9 4LVI
ASG LYS A 149 144 H AlphaHelix -57.85 -40.90 180.8 4LVI
ASG ALA A 150 145 H AlphaHelix -76.48 -37.96 72.0 4LVI
ASG MET A 151 146 H AlphaHelix -86.61 -50.02 12.3 4LVI
ASG PHE A 152 147 C Coil -109.32 82.82 15.5 4LVI
ASG ASP A 153 148 C Coil -104.23 179.27 74.9 4LVI
ASG ARG A 154 149 H AlphaHelix -55.44 -44.68 200.1 4LVI
ASG GLU A 155 150 H AlphaHelix -69.14 -35.25 123.2 4LVI
ASG GLU A 156 151 H AlphaHelix -67.38 -42.78 50.1 4LVI
ASG LEU A 157 152 H AlphaHelix -64.20 -41.05 60.1 4LVI
ASG LYS A 158 153 H AlphaHelix -55.35 -50.43 98.6 4LVI
ASG HIS A 159 154 H AlphaHelix -59.19 -46.01 76.2 4LVI
ASG ILE A 160 155 H AlphaHelix -62.11 -40.42 0.2 4LVI
ASG GLN A 161 156 H AlphaHelix -61.39 -22.78 54.9 4LVI
ASG GLU A 162 157 H AlphaHelix -93.79 -42.72 81.9 4LVI
ASG ASP A 163 158 H AlphaHelix -92.99 -33.60 29.9 4LVI
ASG LEU A 164 159 H AlphaHelix -62.61 -55.16 0.6 4LVI
ASG PRO A 165 160 H AlphaHelix -56.08 -30.84 3.8 4LVI
ASG ARG A 166 161 H AlphaHelix -71.76 -42.11 108.2 4LVI
ASG TYR A 167 162 H AlphaHelix -60.50 -47.79 32.8 4LVI
ASG MET A 168 163 H AlphaHelix -57.51 -44.35 0.0 4LVI
ASG SER A 169 164 H AlphaHelix -66.41 -36.79 51.8 4LVI
ASG ASP A 170 165 H AlphaHelix -67.94 -19.90 120.2 4LVI
ASG HIS A 171 166 H AlphaHelix -102.68 20.86 94.9 4LVI
ASG GLY A 172 167 C Coil 111.55 -20.22 59.8 4LVI
ASG PHE A 173 168 T Turn -97.35 124.75 17.1 4LVI
ASG GLU A 174 169 T Turn -80.29 76.66 167.0 4LVI
ASG LEU A 175 170 T Turn -132.02 140.40 9.2 4LVI
ASG GLU A 176 171 B Bridge -107.35 144.47 119.4 4LVI
ASG ARG A 177 172 C Coil -56.28 149.36 51.8 4LVI
ASG GLY A 178 173 C Coil -64.40 170.18 18.6 4LVI
ASG LYS A 179 174 T Turn -69.74 123.61 137.2 4LVI
ASG LEU A 180 175 T Turn -64.50 130.53 119.1 4LVI
ASG ASN A 181 176 T Turn 66.38 27.13 138.6 4LVI
ASG SER A 182 177 T Turn -51.86 130.39 67.8 4LVI
ASG GLU A 183 178 C Coil -80.17 -2.28 192.1 4LVI
ASG ALA A 184 179 C Coil -56.76 146.80 82.0 4LVI
ASG LYS A 185 180 C Coil -107.00 128.81 180.4 4LVI
ASG HIS A 186 181 C Coil -52.09 130.22 106.0 4LVI
ASG LYS A 187 182 C Coil -99.73 147.33 100.0 4LVI
ASG THR A 188 183 C Coil -67.57 166.13 62.8 4LVI
ASG VAL A 189 184 H AlphaHelix -52.64 -53.19 102.8 4LVI
ASG ALA A 190 185 H AlphaHelix -56.25 -39.97 77.2 4LVI
ASG GLU A 191 186 H AlphaHelix -70.97 -36.65 112.1 4LVI
ASG PHE A 192 187 H AlphaHelix -69.86 -41.07 135.7 4LVI
ASG LYS A 193 188 H AlphaHelix -53.42 -50.32 95.6 4LVI
ASG ARG A 194 189 H AlphaHelix -46.35 -46.45 237.0 4LVI
ASG ALA A 195 190 C Coil -92.89 360.00 93.7 4LVI