Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4tzw.std.txt Дата изменения: Mon Sep 22 16:20:15 2014 Дата индексирования: Sun Apr 10 18:32:14 2016 Кодировка:

REM -------------------------------------------------------------------- 4TZW
REM 4TZW
REM STRIDE: Knowledge-based secondary structure assignment 4TZW
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4TZW
REM 4TZW
REM Residue accessible surface area calculation 4TZW
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4TZW
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4TZW
REM 4TZW
REM ------------------------ General information ----------------------- 4TZW
REM 4TZW
HDR RIBOSOMAL PROTEIN/RNA 11-JUL-14 4TZW 4TZW
CMP MOL_ID: 1; 4TZW
CMP MOLECULE: RIBOSOME-ASSOCIATED PROTEIN L7AE-LIKE; 4TZW
CMP CHAIN: A; 4TZW
CMP ENGINEERED: YES; 4TZW
CMP MOL_ID: 2; 4TZW
CMP MOLECULE: ENGINEERED TRNA; 4TZW
CMP CHAIN: B; 4TZW
CMP ENGINEERED: YES; 4TZW
CMP MOL_ID: 3; 4TZW
CMP MOLECULE: T-BOX STEM I; 4TZW
CMP CHAIN: C; 4TZW
CMP ENGINEERED: YES 4TZW
SRC MOL_ID: 1; 4TZW
SRC ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; 4TZW
SRC ORGANISM_TAXID: 1423; 4TZW
SRC GENE: RPLGB, YBAB, YBXF, BSU01090; 4TZW
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4TZW
SRC EXPRESSION_SYSTEM_TAXID: 511693; 4TZW
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 4TZW
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4TZW
SRC MOL_ID: 2; 4TZW
SRC SYNTHETIC: YES; 4TZW
SRC ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; 4TZW
SRC ORGANISM_TAXID: 1423; 4TZW
SRC MOL_ID: 3; 4TZW
SRC SYNTHETIC: YES; 4TZW
SRC ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS HTE831; 4TZW
SRC ORGANISM_TAXID: 221109 4TZW
AUT J.ZHANG,A.R.FERRE-D'AMARE 4TZW
REM 4TZW
REM -------------------- Secondary structure summary ------------------- 4TZW
REM 4TZW
CHN /data/npidb/pdb/pdb_new/all/pdb4tzw.pdb A 4TZW
REM 4TZW
REM . . . . . 4TZW
SEQ 1 SYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAED 50 4TZW
STR HHHHH B HHHHHHHTTTT EEEETTTT HHHHHHHHHHHHH 4TZW
REM 4TZW
REM . . 4TZW
SEQ 51 QGISVSVESKKLGKACGIEVGAAAVAIIL 79 4TZW
STR H EE HHHHHHH TTTTTTEEEE 4TZW
REM 4TZW
REM 4TZW
REM 4TZW
LOC AlphaHelix TYR 3 A SER 7 A 4TZW
LOC AlphaHelix THR 16 A ALA 22 A 4TZW
LOC AlphaHelix PRO 39 A GLN 52 A 4TZW
LOC AlphaHelix LYS 63 A CYS 69 A 4TZW
LOC Strand GLU 30 A VAL 33 A 4TZW
LOC Strand VAL 56 A SER 57 A 4TZW
LOC Strand ALA 77 A ILE 80 A 4TZW
LOC TurnI ALA 22 A ARG 25 A 4TZW
LOC TurnIV LEU 23 A GLY 26 A 4TZW
LOC TurnI ALA 34 A ALA 37 A 4TZW
LOC TurnIV ILE 71 A GLY 74 A 4TZW
LOC TurnVIII ALA 75 A VAL 78 A 4TZW
REM 4TZW
REM --------------- Detailed secondary structure assignment------------- 4TZW
REM 4TZW
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4TZW
ASG SER A 2 1 C Coil 360.00 164.54 91.3 4TZW
ASG TYR A 3 2 H AlphaHelix -113.31 -25.50 68.4 4TZW
ASG ASP A 4 3 H AlphaHelix -65.05 -27.27 73.8 4TZW
ASG LYS A 5 4 H AlphaHelix -90.23 -22.93 28.8 4TZW
ASG VAL A 6 5 H AlphaHelix -85.23 -37.76 8.4 4TZW
ASG SER A 7 6 H AlphaHelix -54.79 -47.75 89.9 4TZW
ASG GLN A 8 7 C Coil -46.55 159.24 92.9 4TZW
ASG ALA A 9 8 C Coil 102.13 -174.24 52.0 4TZW
ASG LYS A 10 9 C Coil -102.61 -68.98 85.4 4TZW
ASG SER A 11 10 C Coil -104.92 105.31 59.2 4TZW
ASG ILE A 12 11 C Coil -121.81 176.12 57.5 4TZW
ASG ILE A 13 12 C Coil -146.97 125.76 12.3 4TZW
ASG ILE A 14 13 B Bridge -126.91 139.19 80.6 4TZW
ASG GLY A 15 14 C Coil 96.42 165.70 28.3 4TZW
ASG THR A 16 15 H AlphaHelix -99.17 -31.93 30.4 4TZW
ASG LYS A 17 16 H AlphaHelix -57.84 -31.71 73.5 4TZW
ASG GLN A 18 17 H AlphaHelix -70.78 -51.24 79.1 4TZW
ASG THR A 19 18 H AlphaHelix -59.76 -58.01 5.6 4TZW
ASG VAL A 20 19 H AlphaHelix -45.44 -48.02 51.9 4TZW
ASG LYS A 21 20 H AlphaHelix -62.99 -37.42 94.6 4TZW
ASG ALA A 22 21 H AlphaHelix -81.51 -5.42 10.0 4TZW
ASG LEU A 23 22 T Turn -85.95 -24.95 27.2 4TZW
ASG LYS A 24 23 T Turn -92.74 -3.03 177.6 4TZW
ASG ARG A 25 24 T Turn -90.13 -32.56 104.2 4TZW
ASG GLY A 26 25 T Turn 70.21 13.17 41.7 4TZW
ASG SER A 27 26 C Coil -100.15 34.50 72.6 4TZW
ASG VAL A 28 27 C Coil -102.91 133.10 12.2 4TZW
ASG LYS A 29 28 C Coil -81.02 -42.52 26.3 4TZW
ASG GLU A 30 29 E Strand -148.62 154.94 76.8 4TZW
ASG VAL A 31 30 E Strand -135.24 125.50 12.6 4TZW
ASG VAL A 32 31 E Strand -117.40 136.91 9.6 4TZW
ASG VAL A 33 32 E Strand -138.53 150.28 10.6 4TZW
ASG ALA A 34 33 T Turn -95.75 128.95 1.3 4TZW
ASG LYS A 35 34 T Turn -74.99 -24.57 103.6 4TZW
ASG ASP A 36 35 T Turn -76.05 -20.24 102.4 4TZW
ASG ALA A 37 36 T Turn -54.29 157.46 19.8 4TZW
ASG ASP A 38 37 C Coil -61.61 125.21 52.0 4TZW
ASG PRO A 39 38 H AlphaHelix -69.20 -3.45 92.0 4TZW
ASG ILE A 40 39 H AlphaHelix -68.34 -40.49 135.1 4TZW
ASG LEU A 41 40 H AlphaHelix -85.32 -56.15 57.0 4TZW
ASG THR A 42 41 H AlphaHelix -50.20 -36.01 22.4 4TZW
ASG SER A 43 42 H AlphaHelix -40.95 -52.23 73.2 4TZW
ASG SER A 44 43 H AlphaHelix -77.88 -5.43 69.7 4TZW
ASG VAL A 45 44 H AlphaHelix -104.81 -29.19 5.8 4TZW
ASG VAL A 46 45 H AlphaHelix -86.93 -25.41 49.5 4TZW
ASG SER A 47 46 H AlphaHelix -53.54 -51.75 65.3 4TZW
ASG LEU A 48 47 H AlphaHelix -90.60 -26.20 25.2 4TZW
ASG ALA A 49 48 H AlphaHelix -71.57 -17.39 3.1 4TZW
ASG GLU A 50 49 H AlphaHelix -71.09 -59.99 139.4 4TZW
ASG ASP A 51 50 H AlphaHelix -58.48 -39.08 84.2 4TZW
ASG GLN A 52 51 H AlphaHelix -66.95 -50.89 96.2 4TZW
ASG GLY A 53 52 C Coil 128.30 -9.76 59.9 4TZW
ASG ILE A 54 53 C Coil -70.51 141.91 37.1 4TZW
ASG SER A 55 54 C Coil -54.32 131.97 64.8 4TZW
ASG VAL A 56 55 E Strand -112.76 136.71 54.7 4TZW
ASG SER A 57 56 E Strand -119.99 360.00 78.7 4TZW
ASG VAL A 59 57 C Coil 360.00 147.01 28.9 4TZW
ASG GLU A 60 58 C Coil -58.41 -97.30 82.6 4TZW
ASG SER A 61 59 C Coil -93.81 360.00 37.3 4TZW
ASG LYS A 63 60 H AlphaHelix 360.00 -57.51 84.9 4TZW
ASG LYS A 64 61 H AlphaHelix -66.08 -22.20 69.8 4TZW
ASG LEU A 65 62 H AlphaHelix -49.39 -50.04 0.0 4TZW
ASG GLY A 66 63 H AlphaHelix -97.93 14.54 0.0 4TZW
ASG LYS A 67 64 H AlphaHelix -96.55 -29.78 87.5 4TZW
ASG ALA A 68 65 H AlphaHelix -62.74 -47.42 30.4 4TZW
ASG CYS A 69 66 H AlphaHelix -56.61 -20.06 34.7 4TZW
ASG GLY A 70 67 C Coil 105.03 -37.44 65.8 4TZW
ASG ILE A 71 68 T Turn -53.14 143.85 39.2 4TZW
ASG GLU A 72 69 T Turn -100.24 57.20 111.3 4TZW
ASG VAL A 73 70 T Turn -155.88 -21.59 121.2 4TZW
ASG GLY A 74 71 T Turn 72.34 137.61 21.8 4TZW
ASG ALA A 75 72 T Turn -119.08 150.20 15.3 4TZW
ASG ALA A 76 73 T Turn -85.95 -30.95 28.9 4TZW
ASG ALA A 77 74 E Strand -142.66 135.41 0.0 4TZW
ASG VAL A 78 75 E Strand -144.09 125.45 1.0 4TZW
ASG ALA A 79 76 E Strand -117.03 130.23 2.2 4TZW
ASG ILE A 80 77 E Strand -82.72 96.31 7.3 4TZW
ASG ILE A 81 78 C Coil -90.23 61.31 10.0 4TZW
ASG LEU A 82 79 C Coil -76.21 360.00 131.2 4TZW