Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4z47.std.txt Дата изменения: Wed Sep 23 13:16:04 2015 Дата индексирования: Sun Apr 10 18:37:19 2016 Кодировка:

REM -------------------------------------------------------------------- 4Z47
REM 4Z47
REM STRIDE: Knowledge-based secondary structure assignment 4Z47
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4Z47
REM 4Z47
REM Residue accessible surface area calculation 4Z47
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4Z47
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4Z47
REM 4Z47
REM ------------------------ General information ----------------------- 4Z47
REM 4Z47
HDR DNA BINDING PROTEIN/DNA 01-APR-15 4Z47 4Z47
CMP MOL_ID: 1; 4Z47
CMP MOLECULE: G/T MISMATCH-SPECIFIC THYMINE DNA GLYCOSYLASE; 4Z47
CMP CHAIN: A; 4Z47
CMP FRAGMENT: UNP RESIDUES 111-308; 4Z47
CMP SYNONYM: THYMINE-DNA GLYCOSYLASE,HTDG; 4Z47
CMP EC: 3.2.2.29; 4Z47
CMP ENGINEERED: YES; 4Z47
CMP MOL_ID: 2; 4Z47
CMP MOLECULE: DNA; 4Z47
CMP CHAIN: C; 4Z47
CMP ENGINEERED: YES; 4Z47
CMP MOL_ID: 3; 4Z47
CMP MOLECULE: DNA; 4Z47
CMP CHAIN: D; 4Z47
CMP ENGINEERED: YES 4Z47
SRC MOL_ID: 1; 4Z47
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4Z47
SRC ORGANISM_COMMON: HUMAN; 4Z47
SRC ORGANISM_TAXID: 9606; 4Z47
SRC GENE: TDG; 4Z47
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4Z47
SRC EXPRESSION_SYSTEM_TAXID: 562; 4Z47
SRC MOL_ID: 2; 4Z47
SRC SYNTHETIC: YES; 4Z47
SRC ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; 4Z47
SRC ORGANISM_TAXID: 32630; 4Z47
SRC MOL_ID: 3; 4Z47
SRC SYNTHETIC: YES; 4Z47
SRC ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; 4Z47
SRC ORGANISM_TAXID: 32630 4Z47
AUT E.POZHARSKI,S.S.MALIK,A.C.DROHAT 4Z47
REM 4Z47
REM -------------------- Secondary structure summary ------------------- 4Z47
REM 4Z47
CHN /data/npidb/pdb/pdb_new/all/pdb4z47.pdb A 4Z47
REM 4Z47
REM . . . . . 4Z47
SEQ 1 FNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFW 50 4Z47
STR TTTT HHHHH B B TTTT EEEEE HHHHHH TTTTTTTTHHH 4Z47
REM 4Z47
REM . . . . . 4Z47
SEQ 51 KCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFRE 100 4Z47
STR HHHHHHTTTTTT GGGGGGHHHHH EEEEETTTB TTTGGG HHHHHH 4Z47
REM 4Z47
REM . . . . . 4Z47
SEQ 101 GGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIP 150 4Z47
STR HHHHHHHHHHHH TTEEEEE HHHHHHHHHHHH TTTT EEEEEETT 4Z47
REM 4Z47
REM . . . . 4Z47
SEQ 151 DTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNM 196 4Z47
STR TT EEEEE TTTTTTTT GGGHHHHHHHHHHHHHHHHHHHHH 4Z47
REM 4Z47
REM 4Z47
REM 4Z47
LOC AlphaHelix GLU 116 A LEU 120 A 4Z47
LOC AlphaHelix LEU 143 A LYS 148 A 4Z47
LOC AlphaHelix HIS 158 A SER 166 A 4Z47
LOC AlphaHelix LEU 181 A TYR 185 A 4Z47
LOC AlphaHelix SER 205 A TYR 222 A 4Z47
LOC AlphaHelix LYS 232 A PHE 243 A 4Z47
LOC AlphaHelix LYS 285 A ASN 305 A 4Z47
LOC 310Helix HIS 175 A THR 180 A 4Z47
LOC 310Helix SER 200 A ASP 202 A 4Z47
LOC 310Helix ALA 282 A ASP 284 A 4Z47
LOC Strand ILE 134 A GLY 138 A 4Z47
LOC Strand ILE 187 A ASN 191 A 4Z47
LOC Strand ILE 226 A ASN 230 A 4Z47
LOC Strand GLY 253 A LYS 258 A 4Z47
LOC Strand LEU 265 A MET 269 A 4Z47
LOC TurnI' PHE 111 A VAL 114 A 4Z47
LOC TurnII THR 129 A LEU 132 A 4Z47
LOC TurnIV HIS 150 A PRO 153 A 4Z47
LOC TurnI GLY 154 A ASN 157 A 4Z47
LOC TurnVIII GLY 167 A GLU 170 A 4Z47
LOC TurnIV SER 169 A GLN 172 A 4Z47
LOC TurnVIII ASN 191 A GLU 194 A 4Z47
LOC TurnIV THR 197 A SER 200 A 4Z47
LOC TurnVIII PRO 224 A ALA 227 A 4Z47
LOC TurnIV VAL 247 A LEU 250 A 4Z47
LOC TurnII ILE 259 A THR 262 A 4Z47
LOC TurnIV SER 273 A CYS 276 A 4Z47
LOC TurnI CYS 276 A PHE 279 A 4Z47
LOC TurnVIII ALA 277 A PRO 280 A 4Z47
REM 4Z47
REM --------------- Detailed secondary structure assignment------------- 4Z47
REM 4Z47
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4Z47
ASG PHE A 111 1 T Turn 360.00 97.15 97.0 4Z47
ASG ASN A 112 2 T Turn 39.67 41.81 151.2 4Z47
ASG GLY A 113 3 T Turn 85.54 -0.25 84.7 4Z47
ASG VAL A 114 4 T Turn -95.15 128.02 35.7 4Z47
ASG SER A 115 5 C Coil -72.26 149.64 63.5 4Z47
ASG GLU A 116 6 H AlphaHelix -50.19 -53.91 101.1 4Z47
ASG ALA A 117 7 H AlphaHelix -45.48 -43.61 67.5 4Z47
ASG GLU A 118 8 H AlphaHelix -65.25 -46.16 106.8 4Z47
ASG LEU A 119 9 H AlphaHelix -63.77 -27.51 0.4 4Z47
ASG LEU A 120 10 H AlphaHelix -59.34 -21.76 58.8 4Z47
ASG THR A 121 11 C Coil -96.72 -7.32 108.8 4Z47
ASG LYS A 122 12 C Coil -85.44 159.43 75.7 4Z47
ASG THR A 123 13 B Bridge -131.72 166.85 71.4 4Z47
ASG LEU A 124 14 C Coil -117.68 120.24 14.7 4Z47
ASG PRO A 125 15 C Coil -63.35 140.78 78.0 4Z47
ASG ASP A 126 16 C Coil -59.57 151.98 61.2 4Z47
ASG ILE A 127 17 B Bridge -129.56 89.02 12.0 4Z47
ASG LEU A 128 18 C Coil -131.31 146.90 30.0 4Z47
ASG THR A 129 19 T Turn -149.21 172.16 56.6 4Z47
ASG PHE A 130 20 T Turn -74.40 161.35 113.8 4Z47
ASG ASN A 131 21 T Turn 66.16 26.24 153.4 4Z47
ASG LEU A 132 22 T Turn -79.63 148.25 4.0 4Z47
ASG ASP A 133 23 C Coil -76.75 -36.65 17.0 4Z47
ASG ILE A 134 24 E Strand -145.02 134.90 0.6 4Z47
ASG VAL A 135 25 E Strand -116.23 121.60 0.8 4Z47
ASG ILE A 136 26 E Strand -88.53 120.18 2.2 4Z47
ASG ILE A 137 27 E Strand -107.00 108.55 0.0 4Z47
ASG GLY A 138 28 E Strand -85.50 -176.03 1.5 4Z47
ASG ILE A 139 29 C Coil -83.93 -59.56 22.8 4Z47
ASG ASN A 140 30 C Coil -170.94 162.91 21.2 4Z47
ASG PRO A 141 31 C Coil -69.90 137.16 3.1 4Z47
ASG GLY A 142 32 C Coil -84.84 178.95 31.2 4Z47
ASG LEU A 143 33 H AlphaHelix -61.22 -38.97 27.7 4Z47
ASG MET A 144 34 H AlphaHelix -70.15 -36.94 55.7 4Z47
ASG ALA A 145 35 H AlphaHelix -61.63 -43.89 10.5 4Z47
ASG ALA A 146 36 H AlphaHelix -60.74 -43.25 0.5 4Z47
ASG TYR A 147 37 H AlphaHelix -63.14 -49.63 59.3 4Z47
ASG LYS A 148 38 H AlphaHelix -73.62 -35.41 95.5 4Z47
ASG GLY A 149 39 C Coil 75.37 22.80 24.9 4Z47
ASG HIS A 150 40 T Turn -136.85 157.09 49.5 4Z47
ASG HIS A 151 41 T Turn -77.29 134.49 2.6 4Z47
ASG TYR A 152 42 T Turn 52.13 55.71 28.2 4Z47
ASG PRO A 153 43 T Turn -82.99 -4.87 17.2 4Z47
ASG GLY A 154 44 T Turn -58.21 125.74 25.5 4Z47
ASG PRO A 155 45 T Turn -51.82 -31.39 128.1 4Z47
ASG GLY A 156 46 T Turn -101.72 0.85 45.6 4Z47
ASG ASN A 157 47 T Turn -63.78 141.38 38.7 4Z47
ASG HIS A 158 48 H AlphaHelix -82.93 -11.66 18.2 4Z47
ASG PHE A 159 49 H AlphaHelix -56.24 -51.66 0.2 4Z47
ASG TRP A 160 50 H AlphaHelix -72.92 -30.03 16.4 4Z47
ASG LYS A 161 51 H AlphaHelix -64.05 -49.60 108.0 4Z47
ASG CYS A 162 52 H AlphaHelix -62.01 -38.99 0.0 4Z47
ASG LEU A 163 53 H AlphaHelix -52.95 -44.35 1.2 4Z47
ASG PHE A 164 54 H AlphaHelix -77.43 -46.44 83.4 4Z47
ASG MET A 165 55 H AlphaHelix -58.51 -33.40 68.4 4Z47
ASG SER A 166 56 H AlphaHelix -79.12 -16.10 3.6 4Z47
ASG GLY A 167 57 T Turn 83.18 9.19 29.2 4Z47
ASG LEU A 168 58 T Turn -66.41 -26.68 4.8 4Z47
ASG SER A 169 59 T Turn -121.68 144.94 0.7 4Z47
ASG GLU A 170 60 T Turn -88.36 -7.98 145.6 4Z47
ASG VAL A 171 61 T Turn -130.97 165.85 78.1 4Z47
ASG GLN A 172 62 T Turn -78.30 114.30 91.0 4Z47
ASG LEU A 173 63 C Coil -100.59 -179.78 17.0 4Z47
ASG ASN A 174 64 C Coil -146.13 -178.56 59.1 4Z47
ASG HIS A 175 65 G 310Helix -51.77 -36.29 30.2 4Z47
ASG MET A 176 66 G 310Helix -65.23 -15.74 120.7 4Z47
ASG ASP A 177 67 G 310Helix -89.45 2.87 44.3 4Z47
ASG ASP A 178 68 G 310Helix -57.79 -36.03 0.2 4Z47
ASG HIS A 179 69 G 310Helix -73.37 -16.38 110.5 4Z47
ASG THR A 180 70 G 310Helix -80.06 -12.04 60.7 4Z47
ASG LEU A 181 71 H AlphaHelix -67.98 -35.74 0.0 4Z47
ASG PRO A 182 72 H AlphaHelix -63.78 -49.02 18.4 4Z47
ASG GLY A 183 73 H AlphaHelix -73.41 -42.71 78.1 4Z47
ASG LYS A 184 74 H AlphaHelix -83.55 -37.28 146.4 4Z47
ASG TYR A 185 75 H AlphaHelix -120.97 -2.07 26.6 4Z47
ASG GLY A 186 76 C Coil 74.18 25.67 13.2 4Z47
ASG ILE A 187 77 E Strand -124.56 131.76 0.6 4Z47
ASG GLY A 188 78 E Strand -125.97 -178.60 0.0 4Z47
ASG PHE A 189 79 E Strand -143.53 142.15 0.0 4Z47
ASG THR A 190 80 E Strand -154.48 -177.43 2.0 4Z47
ASG ASN A 191 81 E Strand -134.21 155.69 20.3 4Z47
ASG MET A 192 82 T Turn -65.46 -37.00 4.0 4Z47
ASG VAL A 193 83 T Turn -128.53 136.42 9.1 4Z47
ASG GLU A 194 84 T Turn -85.74 -29.01 142.2 4Z47
ASG ARG A 195 85 B Bridge -69.94 130.28 98.7 4Z47
ASG THR A 196 86 C Coil -70.38 129.45 1.1 4Z47
ASG THR A 197 87 T Turn -132.25 153.79 0.2 4Z47
ASG PRO A 198 88 T Turn -46.84 -40.97 58.4 4Z47
ASG GLY A 199 89 T Turn -161.68 177.45 18.3 4Z47
ASG SER A 200 90 G 310Helix -67.51 -17.36 39.7 4Z47
ASG LYS A 201 91 G 310Helix -93.82 -1.78 199.6 4Z47
ASG ASP A 202 92 G 310Helix -70.48 -10.50 83.6 4Z47
ASG LEU A 203 93 C Coil -90.84 140.33 15.3 4Z47
ASG SER A 204 94 C Coil -87.15 162.31 56.5 4Z47
ASG SER A 205 95 H AlphaHelix -61.94 -43.03 74.7 4Z47
ASG LYS A 206 96 H AlphaHelix -58.13 -40.43 65.3 4Z47
ASG GLU A 207 97 H AlphaHelix -66.78 -42.32 42.1 4Z47
ASG PHE A 208 98 H AlphaHelix -63.01 -38.71 21.2 4Z47
ASG ARG A 209 99 H AlphaHelix -74.85 -35.48 126.1 4Z47
ASG GLU A 210 100 H AlphaHelix -55.06 -47.75 106.0 4Z47
ASG GLY A 211 101 H AlphaHelix -64.72 -41.21 8.0 4Z47
ASG GLY A 212 102 H AlphaHelix -54.31 -44.88 0.0 4Z47
ASG ARG A 213 103 H AlphaHelix -62.89 -42.71 122.4 4Z47
ASG ILE A 214 104 H AlphaHelix -62.86 -40.79 65.3 4Z47
ASG LEU A 215 105 H AlphaHelix -60.58 -48.30 2.4 4Z47
ASG VAL A 216 106 H AlphaHelix -61.14 -38.15 19.6 4Z47
ASG GLN A 217 107 H AlphaHelix -61.92 -39.59 106.1 4Z47
ASG LYS A 218 108 H AlphaHelix -64.85 -44.04 55.5 4Z47
ASG LEU A 219 109 H AlphaHelix -63.34 -36.18 4.4 4Z47
ASG GLN A 220 110 H AlphaHelix -64.06 -28.98 58.5 4Z47
ASG LYS A 221 111 H AlphaHelix -79.50 -52.95 118.6 4Z47
ASG TYR A 222 112 H AlphaHelix -90.21 -18.76 46.6 4Z47
ASG GLN A 223 113 C Coil 43.89 59.07 103.8 4Z47
ASG PRO A 224 114 T Turn -64.96 164.74 2.3 4Z47
ASG ARG A 225 115 T Turn -63.50 -38.77 63.9 4Z47
ASG ILE A 226 116 E Strand -141.34 125.57 0.0 4Z47
ASG ALA A 227 117 E Strand -92.59 115.76 0.0 4Z47
ASG VAL A 228 118 E Strand -104.44 116.64 0.0 4Z47
ASG PHE A 229 119 E Strand -90.66 111.50 0.0 4Z47
ASG ASN A 230 120 E Strand -84.33 76.76 2.5 4Z47
ASG GLY A 231 121 C Coil 137.34 124.85 1.3 4Z47
ASG LYS A 232 122 H AlphaHelix -67.14 -39.17 59.9 4Z47
ASG CYS A 233 123 H AlphaHelix -62.48 -35.57 48.5 4Z47
ASG ILE A 234 124 H AlphaHelix -78.54 -28.67 0.0 4Z47
ASG TYR A 235 125 H AlphaHelix -70.51 -33.71 1.6 4Z47
ASG GLU A 236 126 H AlphaHelix -56.01 -48.73 89.1 4Z47
ASG ILE A 237 127 H AlphaHelix -65.71 -45.75 44.3 4Z47
ASG PHE A 238 128 H AlphaHelix -64.28 -40.93 0.0 4Z47
ASG SER A 239 129 H AlphaHelix -62.31 -47.24 9.2 4Z47
ASG LYS A 240 130 H AlphaHelix -60.77 -41.23 115.5 4Z47
ASG GLU A 241 131 H AlphaHelix -73.41 -37.04 69.7 4Z47
ASG VAL A 242 132 H AlphaHelix -103.38 -39.91 34.4 4Z47
ASG PHE A 243 133 H AlphaHelix -107.91 -6.11 41.6 4Z47
ASG GLY A 244 134 C Coil 60.77 34.28 63.3 4Z47
ASG VAL A 245 135 C Coil -127.22 126.99 40.4 4Z47
ASG LYS A 246 136 C Coil -124.52 106.95 127.0 4Z47
ASG VAL A 247 137 T Turn -89.57 150.78 72.5 4Z47
ASG LYS A 248 138 T Turn -49.31 -62.30 89.3 4Z47
ASG ASN A 249 139 T Turn -124.27 79.65 123.4 4Z47
ASG LEU A 250 140 T Turn -55.64 135.75 29.3 4Z47
ASG GLU A 251 141 C Coil -112.16 160.49 144.5 4Z47
ASG PHE A 252 142 C Coil -73.21 175.71 42.4 4Z47
ASG GLY A 253 143 E Strand 86.06 -152.22 8.8 4Z47
ASG LEU A 254 144 E Strand -69.87 134.04 94.5 4Z47
ASG GLN A 255 145 E Strand -100.79 153.24 18.9 4Z47
ASG PRO A 256 146 E Strand -88.47 21.06 108.4 4Z47
ASG HIS A 257 147 E Strand -127.46 141.51 65.0 4Z47
ASG LYS A 258 148 E Strand -87.82 151.18 95.9 4Z47
ASG ILE A 259 149 T Turn -55.87 133.92 0.6 4Z47
ASG PRO A 260 150 T Turn -56.33 138.00 44.3 4Z47
ASG ASP A 261 151 T Turn 70.51 12.73 154.2 4Z47
ASG THR A 262 152 T Turn -139.78 171.13 9.6 4Z47
ASG GLU A 263 153 C Coil -102.78 11.11 137.4 4Z47
ASG THR A 264 154 C Coil -68.87 125.17 3.0 4Z47
ASG LEU A 265 155 E Strand -82.51 159.52 28.1 4Z47
ASG CYS A 266 156 E Strand -117.97 129.50 0.0 4Z47
ASG TYR A 267 157 E Strand -131.55 133.03 8.4 4Z47
ASG VAL A 268 158 E Strand -119.83 135.63 0.0 4Z47
ASG MET A 269 159 E Strand -125.35 158.76 0.6 4Z47
ASG PRO A 270 160 C Coil -66.48 139.57 3.7 4Z47
ASG SER A 271 161 C Coil -49.42 136.31 27.9 4Z47
ASG SER A 272 162 C Coil -67.33 -13.81 0.8 4Z47
ASG SER A 273 163 T Turn -54.69 137.19 39.1 4Z47
ASG ALA A 274 164 T Turn -79.94 14.91 53.6 4Z47
ASG ARG A 275 165 T Turn -70.18 -37.80 196.6 4Z47
ASG CYS A 276 166 T Turn -76.85 126.59 33.6 4Z47
ASG ALA A 277 167 T Turn -72.52 -25.68 79.0 4Z47
ASG GLN A 278 168 T Turn -68.61 -16.91 152.3 4Z47
ASG PHE A 279 169 T Turn -136.15 76.01 43.2 4Z47
ASG PRO A 280 170 T Turn -71.01 -24.15 79.7 4Z47
ASG ARG A 281 171 C Coil -118.86 158.49 141.8 4Z47
ASG ALA A 282 172 G 310Helix -48.48 -45.24 4.1 4Z47
ASG GLN A 283 173 G 310Helix -53.85 -30.13 101.7 4Z47
ASG ASP A 284 174 G 310Helix -80.31 -9.38 50.7 4Z47
ASG LYS A 285 175 H AlphaHelix -107.13 -17.17 0.2 4Z47
ASG VAL A 286 176 H AlphaHelix -63.46 -28.07 8.4 4Z47
ASG HIS A 287 177 H AlphaHelix -51.99 -40.26 105.5 4Z47
ASG TYR A 288 178 H AlphaHelix -68.57 -37.37 48.1 4Z47
ASG TYR A 289 179 H AlphaHelix -65.68 -37.17 1.4 4Z47
ASG ILE A 290 180 H AlphaHelix -67.78 -43.34 62.9 4Z47
ASG LYS A 291 181 H AlphaHelix -64.61 -32.64 107.3 4Z47
ASG LEU A 292 182 H AlphaHelix -65.35 -42.49 0.8 4Z47
ASG LYS A 293 183 H AlphaHelix -60.02 -43.13 50.9 4Z47
ASG ASP A 294 184 H AlphaHelix -59.09 -43.91 73.1 4Z47
ASG LEU A 295 185 H AlphaHelix -61.66 -44.09 15.9 4Z47
ASG ARG A 296 186 H AlphaHelix -58.42 -49.44 37.5 4Z47
ASG ASP A 297 187 H AlphaHelix -66.05 -34.88 71.2 4Z47
ASG GLN A 298 188 H AlphaHelix -62.10 -43.77 118.5 4Z47
ASG LEU A 299 189 H AlphaHelix -66.92 -36.33 37.6 4Z47
ASG LYS A 300 190 H AlphaHelix -67.69 -31.48 79.2 4Z47
ASG GLY A 301 191 H AlphaHelix -64.04 -42.90 25.4 4Z47
ASG ILE A 302 192 H AlphaHelix -63.00 -44.86 98.4 4Z47
ASG GLU A 303 193 H AlphaHelix -60.71 -50.06 93.7 4Z47
ASG ARG A 304 194 H AlphaHelix -57.52 -36.94 219.1 4Z47
ASG ASN A 305 195 H AlphaHelix -96.70 27.71 141.7 4Z47
ASG MET A 306 196 C Coil -113.61 360.00 178.9 4Z47