Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.genebee.msu.ru/~bennigsen/nhunt_files/ex2/blast.out Дата изменения: Sun Oct 16 23:50:47 2011 Дата индексирования: Mon Oct 1 19:30:29 2012 Кодировка:

BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: archaea.fasta
5 sequences; 10,953,209 total letters



Query= NC_000913.2 NC_000913.2 Escherichia coli str. K-12 substr. MG1655
chromosome, complete genome

Length=300
Score E
Sequences producing significant alignments: (Bits) Value

embl|AE009441|AE009441 Pyrobaculum aerophilum str. IM2, complet... 98.4 5e-21
embl|AE006641|AE006641 Sulfolobus solfataricus P2, complete genome 95.6 4e-20
embl|AE000782|AE000782 Archaeoglobus fulgidus DSM 4304, complet... 91.4 7e-19
embl|AE004437|AE004437 Halobacterium sp. NRC-1, complete genome 78.0 8e-15
embl|AE017261|AE017261 Picrophilus torridus DSM 9790, complete ... 76.1 3e-14


> embl|AE009441|AE009441 Pyrobaculum aerophilum str. IM2, complete
genome.
Length=2222430

Score = 98.4 bits (402), Expect = 5e-21
Identities = 150/234 (65%), Gaps = 1/234 (0%)
Strand=Plus/Plus

Query 68 CCCGCAGAAGAAGCACCGGCTAACTCCG-TGCCAGCAGCCGCGGTAATACGGAGGGTGCA 126
|| | ||| |||| || || || | || |||| ||||||||||||| ||
Sbjct 1090800 CCGGGCGAATAAGCGGGGGGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCTCCGCG 1090859

Query 127 AGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTG 186
|| | | | ||||||||| |||||||| || || ||| | ||||| ||
Sbjct 1090860 AGTGGTCGGGGTGTTTACTGGGCTTAAAGCGCCCGTAGCCGGCCCGGCAAGTCGCTCCTG 1090919

Query 187 AAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAG 246
|||||||||||||||||| ||| | | ||||||| | ||| | | | ||||
Sbjct 1090920 AAATCCCCGGGCTCAACCCGGGGGCGGGGGGCGATACTGCCGGGCTAGGGGGCGGGAGAG 1090979

Query 247 GGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACC 300
| | | | ||| || |||| || ||||| ||| | | |||||| |||
Sbjct 1090980 GCCGCCGGTACTCCGGGGGTAGGGGCGAAATCCGTTAATCCCCGGAGGACCACC 1091033


Score = 28.1 bits (103), Expect = 7.8
Identities = 35/53 (67%), Gaps = 0/53 (0%)
Strand=Plus/Plus

Query 197 GCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGG 249
| || || ||| ||| | |||||| |||| | ||| |||| | || ||
Sbjct 97796 GTTCTCCCGCCGAAGTGCTTGAGATACTCGCAACCGTGAATCTCAAAAAGAGG 97848


> embl|AE006641|AE006641 Sulfolobus solfataricus P2, complete genome.

Length=2992245

Score = 95.6 bits (390), Expect = 4e-20
Identities = 146/228 (65%), Gaps = 1/228 (0%)
Strand=Plus/Plus

Query 74 GAAGAAGCACCGGCTAACTCCG-TGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTT 132
||| |||| || || || | || |||| ||||||||||||| || || | |
Sbjct 872124 GAATAAGCGGGGGGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGT 872183

Query 133 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCC 192
||||||||| |||||||| || || ||| | |||||| | ||| |
Sbjct 872184 CGGGACTCTTACTGGGCCTAAAGCGCCCGTAGCCGGCCCGACAAGTCACTCCTTAAAGAC 872243

Query 193 CCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGT 252
|| ||||||||| ||| | || |||||||| | ||| | | | ||||| |
Sbjct 872244 CCCGGCTCAACCGGGGGAATGGGGGTGATACTGTCGGGCTAGGGGGCGGGAGAGGCCAGC 872303

Query 253 AGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACC 300
| | ||| || |||| || ||||| | ||| || |||||| |||
Sbjct 872304 GGTACTCCCGGAGTAGGGGCGAAATCCTCAGATCTCGGGAGGACCACC 872351


> embl|AE000782|AE000782 Archaeoglobus fulgidus DSM 4304, complete
genome.
Length=2178400

Score = 91.4 bits (372), Expect = 7e-19
Identities = 148/234 (64%), Gaps = 2/234 (0%)
Strand=Plus/Minus

Query 69 CCGCAGAAGAAGCACCGGCTAACTCCG-TGCCAGCAGCCGCGGTAATACGGAGGGTGCAA 127
|| || | ||| |||| || ||| || |||| ||||||||||||| | || | |
Sbjct 1790038 CCCCACAGCAAGGGCCGGGCAAGGCCGGTGGCAGCCGCCGCGGTAATACCGGCGGCCCGA 1789979

Query 128 GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGA 187
| | | ||| ||||| ||||||| || || ||| || |||||| | ||
Sbjct 1789978 GTGGCGGCCACTTTTATTGGGCCTAAAGCGTCCGTAGCCGGGCTGGTAAGTCCTCCGGGA 1789919

Query 188 AATCCCCGGGCTCAACCTGGGAACTG-CATCTGATACTGGCAAGCTTGAGTCTCGTAGAG 246
|||| |||| |||| |||| | ||||||| || || | | | | ||||
Sbjct 1789918 AATCTGGCGGCTTAACCGTCAGACTGCCGGAGGATACTGCCAGCCTAGGGACCGGGAGAG 1789859

Query 247 GGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACC 300
| || | ||||| || |||| |||||||| | | | |||||| |||
Sbjct 1789858 GCCGGGGGTATTCCCGGAGTAGGGGTGAAATCCTGTAATCCCGGGAGGACCACC 1789805


> embl|AE004437|AE004437 Halobacterium sp. NRC-1, complete genome.

Length=2014239

Score = 78.0 bits (315), Expect = 8e-15
Identities = 139/225 (62%), Gaps = 3/225 (1%)
Strand=Plus/Plus

Query 74 GAAGAAGCACCGGCTAACTCCG-TGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTT 132
||| ||| || || || ||| ||||||| ||||||||||||| | || | || | |
Sbjct 1875935 GAATAAGGACTGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGAT 1875994

Query 133 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCC 192
|| ||| ||||| ||||||| || || || | ||||| | || ||||||
Sbjct 1875995 GGCCGATCTTATTGGGCCTAAAGCGTCCGTAGCTGGCTGAACAAGTCCGTTGGGAAATCT 1876054

Query 193 CCGGGCTCAACCTG-GGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGG 251
||| ||| | | | || | || |||| |||||| | | | ||| | |
Sbjct 1876055 GTCCGCTTAACGGGCAGGCGTCCAGCGGAAACTGTTCAGCTTGGGACCGGAAGACCTGAG 1876114

Query 252 TAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAA 296
| | | || |||| ||||||| | | | ||||| | |
Sbjct 1876115 GGGTACGTCTGGGGTAGGAGTGAAAT-CCTGTAATCCTGGACGGA 1876158


> embl|AE017261|AE017261 Picrophilus torridus DSM 9790, complete
genome.
Length=1545895

Score = 76.1 bits (307), Expect = 3e-14
Identities = 143/230 (63%), Gaps = 5/230 (2%)
Strand=Plus/Minus

Query 74 GAAGAAGCACCGGCTAACTCCG-TGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTT 132
||| ||| | || ||| | | ||||||| |||||||||| || | |||| | |
Sbjct 471758 GAATAAGGGCTGGGTAAGACGGGTGCCAGCCGCCGCGGTAACACCCGCAGCTCAAGTGGT 471699

Query 133 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCC 192
|| |||||| || ||||||| || || ||| || ||| || | |||| |
Sbjct 471698 GGTCACTTTTACTGAGCCTAAAGCGTTCGTAGCCGGCTTTGTAAATCTCCAGGTAAATTC 471639

Query 193 CCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGT 252
| ||| ||| | || || | || |||| ||||||| | | | | || |
Sbjct 471638 TAGCGCTTAACGTTAGATCTCCTGGAGAGACTGCAAAGCTTGGGACCGGGTGGGGTTGAA 471579

Query 253 AGAA-TTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGG-AGGAATACC 300
| | || |||| |||| ||| |||| | | | |||| |||| |||
Sbjct 471578 CGTACTTTCAGG-GTAGGGGTAAAATCC-TGTAATCCTGGAAGGACGACC 471531



Lambda K H
0.192 0.176 0.357

Gapped
Lambda K H
0.163 0.0680 0.160

Effective search space used: 2234356716


Database: archaea.fasta
Posted date: Oct 13, 2011 3:03 AM
Number of letters in database: 10,953,209
Number of sequences in database: 5



Matrix: blastn matrix 5 -4
Gap Penalties: Existence: 10, Extension: 6