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The list of Eubacteria domains composed the orthologuos groups of the set
1
Pfam AC Pfam ID Description
PF00035 dsrm Double-stranded RNA binding motif
PF00113 Enolase_C Enolase, C-terminal TIM barrel domain
PF00119 ATP-synt_A ATP synthase A chain
PF00162 PGK Phosphoglycerate kinase
PF00164 Ribosomal_S12 Ribosomal protein S12
PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain
PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain
PF00203 Ribosomal_S19 Ribosomal protein S19
PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
PF00276 Ribosomal_L23 Ribosomal protein L23
PF00281 Ribosomal_L5 Ribosomal protein L5
PF00297 Ribosomal_L3 Ribosomal protein L3
PF00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain
PF00312 Ribosomal_S15 Ribosomal protein S15
PF00318 Ribosomal_S2 Ribosomal protein S2
PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain
PF00380 Ribosomal_S9 Ribosomal protein S9/S16
PF00410 Ribosomal_S8 Ribosomal protein S8
PF00411 Ribosomal_S11 Ribosomal protein S11
PF00416 Ribosomal_S13 Ribosomal protein S13/S18
PF00417 Ribosomal_S3_N Ribosomal protein S3, N-terminal domain
PF00438 S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal
domain
PF00453 Ribosomal_L20 Ribosomal protein L20
PF00466 Ribosomal_L10 Ribosomal protein L10
PF00542 Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
PF00572 Ribosomal_L13 Ribosomal protein L13
PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family L4/L1
PF00625 Guanylate_kin Guanylate kinase
PF00673 Ribosomal_L5_C Ribosomal protein L5P family, C-terminal domain
PF00673 Ribosomal_L5_C Ribosomal protein L5P family, C-terminal domain
PF00687 Ribosomal_L1 Ribosomal protein L1p/L10e family
PF00707 IF3_C Translation initiation factor IF-3, C-terminal
domain
PF00825 Ribonuclease_P Ribonuclease P
PF00829 Ribosomal_L21p Ribosomal prokaryotic L21 protein
PF00831 Ribosomal_L29 Ribosomal protein L29
PF00861 Ribosomal_L18p Ribosomal protein L18p/L5e family
PF00889 EF_TS Elongation factor TS
PF01016 Ribosomal_L27 Ribosomal protein L27
PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
PF01245 Ribosomal_L19 Ribosomal protein L19
PF01250 Ribosomal_S6 Ribosomal protein S6
PF01281 Ribosomal_L9_N Ribosomal protein L9, Ribosomal protein
PF01330 RuvA_N RuvA, N-terminal domain
PF01409 tRNA-synt_2d tRNA synthetases class II core domain (F)
PF01632 Ribosomal_L35p Ribosomal protein L35
PF01668 SmpB SmpB protein
PF01715 IPPT IPP transferase
PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
PF01765 RRF Ribosome recycling factor
PF01782 RimM RimM, N-terminal domain
PF01795 Methyltransf_5 MraW methylase family
PF02130 UPF0054 Uncharacterized protein family UPF0054
PF02132 RecR RecR protein
PF02367 UPF0079 Uncharacterised P-loop hydrolase UPF0079
PF02390 Methyltransf_4 Putative methyltransferase
PF02576 DUF150 Uncharacterised BCR, YhbC family COG0779
PF02609 Exonuc_VII_S Exonuclease VII small subunit
PF02772 S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain
PF02773 S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal
domain
PF02843 GARS_C Phosphoribosylglycinamide synthetase, C domain
PF02844 GARS_N Phosphoribosylglycinamide synthetase, N domain
PF02912 Phe_tRNA-synt_N Aminoacyl tRNA synthetase class II, N-terminal
domain
PF02938 GAD GAD-domain
PF02978 SRP_SPB Signal peptide binding domain
PF03147 FDX-ACB Ferredoxin-fold anticodon binding domain
PF03484 B5 tRNA synthetase B5 domain
PF03652 UPF0081 Uncharacterised protein family (UPF0081)
PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain
PF03946 Ribosomal_L11_N Ribosomal protein L11, N-terminal domain
PF03947 Ribosomal_L2_C Ribosomal protein L2, C-terminal domain
PF03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain
PF03952 Enolase_N Enolase, N-terminal domain
PF05491 RuvB_C Holliday junction DNA helicase ruvB C-terminus
PF05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus
PF06071 YchF-GTPase_C Protein of unknown function (DUF933)
PF06144 DNA_pol3_delta DNA polymerase III, delta subunit
PF06421 LepA_C GTP-binding protein LepA C-terminus
PF07499 RuvA_C RuvA, C-terminal domain
PF08459 UvrC_HhH_N UvrC Helix-hairpin-helix N-terminal
PF08529 NusA_N NusA, N-terminal domain
PF10458 Val_tRNA-synt_C Valyl tRNA synthetase tRNA binding arm