#.......# 
 S.......S 
  T.....E 
    R.Q 
     U 
    E.C 
  N.....T 
 C.......U 
 #.......R
  E.....E 
    S.S 
    

Structures and Sequences

Exclusive sequences in eukaryotic genomes

Contex dependent mutation trends in the human genome

• Genomes (xls file, 150 KB)
  List of analyzed genomes: 139 full genomes, 35 masked genomes, 33 CDS of genomes
• Verification (xls file, 70 MB)
  Verification of downloaded genome data: genome size in bp is shown, occurencies of each word of 1-7 letters and its complement are compared for all genomes
• Contrasts_K (xls file, 55 MB)
  Contrasts of words of 1-7 letters in full genomes according the method of Karlin et al.
• Taxonomy specific exclusive words (xls file, 18 MB)
  Words of 1-7 letters in full genomes that are under/over-represented in 50% or more genomes from a wide taxonomic group
• Values C , computed according Markov model of rank (n-2), in several eukaryotic genomes (xls file, 350 KB)
  Explanations are given on "Legend" sheet of each file
  This data shows that almost all words of length 2,3,...,7 are highly statistically over-/underrepresented in eukaryotic genomes