NPIDB: SCOP families

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List of Scop domains:

Best resolution complexes of SCOP family representatives, bound with nucleic acid

List of SCOP families detected in NPIDB entries:


Hide all	Show all	\| CL = Class, CF = Fold, SF = Superfamily, FA = Family \| See SCOP-help for more information

SCOP: All list CL: All alpha proteins CF: A DNA-binding domain in eukaryotic transcription factors SF: A DNA-binding domain in eukaryotic transcription factors FA: A DNA-binding domain in eukaryotic transcription factors CF: alpha-alpha superhelix SF: ARM repeat FA: Pumilio repeat SF: TROVE domain-like FA: TROVE domain-like CF: An anticodon-binding domain of class I aminoacyl-tRNA synthetases SF: An anticodon-binding domain of class I aminoacyl-tRNA synthetases FA: C-terminal domain of glutamyl-tRNA synthetase (GluRS) CF: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases SF: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases FA: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases CF: ATP-dependent DNA ligase DNA-binding domain SF: ATP-dependent DNA ligase DNA-binding domain FA: ATP-dependent DNA ligase DNA-binding domain CF: BRCA2 helical domain SF: BRCA2 helical domain FA: BRCA2 helical domain CF: BRCA2 tower domain SF: BRCA2 tower domain FA: BRCA2 tower domain CF: Cryptochrome/photolyase FAD-binding domain SF: Cryptochrome/photolyase FAD-binding domain FA: Cryptochrome/photolyase FAD-binding domain CF: Cyclin-like SF: Cyclin-like FA: Transcription factor IIB (TFIIB), core domain [ a.74.1.2 ] CF: DNA repair protein MutS, domain III SF: DNA repair protein MutS, domain III FA: DNA repair protein MutS, domain III [ a.113.1.1 ] CF: DNA-glycosylase SF: DNA-glycosylase FA: DNA repair glycosylase, 2 C-terminal domains [ a.96.1.3 ] FA: Endonuclease III [ a.96.1.1 ] FA: Mismatch glycosylase [ a.96.1.2 ] CF: DNA/RNA-binding 3-helical bundle SF: "Winged helix" DNA-binding domain FA: 39 kda initiator binding protein, IBP39, N-terminal domain [ a.4.5.44 ] FA: Arginine repressor (ArgR), N-terminal DNA-binding domain FA: C-terminal fragment of elongation factor SelB FA: CAP C-terminal domain-like [ a.4.5.4 ] FA: Cell cycle transcription factor e2f-dp FA: ets domain [ a.4.5.21 ] FA: Forkhead DNA-binding domain FA: FtsK C-terminal domain-like FA: GntR-like transcriptional regulators [ a.4.5.6 ] FA: Heat-shock transcription factor [ a.4.5.22 ] FA: Interferon regulatory factor [ a.4.5.23 ] FA: Iron-dependent repressor protein [ a.4.5.24 ] FA: La domain FA: Lrp/AsnC-like transcriptional regulator N-terminal domain FA: MarR-like transcriptional regulators FA: P4 origin-binding domain-like [ a.4.5.20 ] FA: Penicillinase repressor [ a.4.5.39 ] FA: RecQ helicase DNA-binding domain-like FA: Replication initiation protein [ a.4.5.10 ] FA: Replication terminator protein (RTP) [ a.4.5.7 ] FA: Restriction endonuclease FokI, N-terminal (recognition) domain [ a.4.5.12 ] FA: Z-DNA binding domain SF: ARID-like FA: ARID domain SF: C-terminal effector domain of the bipartite response regulators FA: GerE-like (LuxR/UhpA family of transcriptional regulators) [ a.4.6.2 ] FA: PhoB-like [ a.4.6.1 ] FA: Spo0A [ a.4.6.3 ] SF: Homeodomain-like FA: AraC type transcriptional activator FA: Centromere-binding [ a.4.1.7 ] FA: DNA-binding domain of rap1 [ a.4.1.6 ] FA: DNA-binding domain of telomeric protein FA: Homeodomain FA: Myb/SANT domain [ a.4.1.3 ] FA: Paired domain [ a.4.1.5 ] FA: Recombinase DNA-binding domain [ a.4.1.2 ] FA: Tetracyclin repressor-like, N-terminal domain SF: KorB DNA-binding domain-like FA: KorB DNA-binding domain-like [ a.4.14.1 ] SF: Methylated DNA-protein cysteine methyltransferase, C-terminal domain FA: Methylated DNA-protein cysteine methyltransferase, C-terminal domain [ a.4.2.1 ] SF: Ribosomal protein L11, C-terminal domain FA: Ribosomal protein L11, C-terminal domain SF: Ribosomal protein S18 FA: Ribosomal protein S18 SF: RNA polymerase subunit RPB10 FA: RNA polymerase subunit RPB10 SF: Sigma3 and sigma4 domains of RNA polymerase sigma factors FA: Sigma4 domain SF: TrpR-like FA: Chromosomal replication initiation factor DnaA C-terminal domain IV [ a.4.12.2 ] FA: Trp repressor, TrpR [ a.4.12.1 ] CF: Four-helical up-and-down bundle SF: Domain of the SRP/SRP receptor G-proteins FA: Domain of the SRP/SRP receptor G-proteins SF: RecG, N-terminal domain FA: RecG, N-terminal domain SF: TMV-like viral coat proteins FA: TMV-like viral coat proteins CF: GatB/YqeY motif SF: GatB/YqeY motif FA: GatB/GatE C-terminal domain-like CF: GntR ligand-binding domain-like SF: GntR ligand-binding domain-like FA: GntR ligand-binding domain-like CF: Histone-fold SF: Histone-fold FA: Nucleosome core histones FA: TBP-associated factors, TAFs [ a.22.1.3 ] CF: HLH-like SF: HLH, helix-loop-helix DNA-binding domain FA: HLH, helix-loop-helix DNA-binding domain CF: HMG-box SF: HMG-box FA: HMG-box CF: IHF-like DNA-binding proteins SF: IHF-like DNA-binding proteins FA: Prokaryotic DNA-bending protein [ a.55.1.1 ] CF: Iron-dependent repressor protein, dimerization domain SF: Iron-dependent repressor protein, dimerization domain FA: Iron-dependent repressor protein, dimerization domain CF: lambda repressor-like DNA-binding domains SF: lambda repressor-like DNA-binding domains FA: Bacteriophage CII protein FA: CUT domain FA: GalR/LacI-like bacterial regulator FA: Phage repressors FA: POU-specific domain [ a.35.1.1 ] CF: LEM/SAP HeH motif SF: Recombination endonuclease VII, C-terminal and dimerization domains FA: Recombination endonuclease VII, C-terminal and dimerization domains SF: Rho N-terminal domain-like FA: Rho termination factor, N-terminal domain CF: Long alpha-hairpin SF: Eukaryotic DNA topoisomerase I, dispensable insert domain FA: Eukaryotic DNA topoisomerase I, dispensable insert domain [ a.2.8.1 ] SF: Ribosomal protein L29 (L29p) FA: Ribosomal protein L29 (L29p) SF: tRNA-binding arm FA: Phenylalanyl-tRNA synthetase (PheRS) FA: Seryl-tRNA synthetase (SerRS) FA: Valyl-tRNA synthetase (ValRS) C-terminal domain CF: Non-globular all-alpha subunits of globular proteins SF: Lag-3 N-terminal region FA: Lag-3 N-terminal region SF: Ribosomal protein L39e FA: Ribosomal protein L39e CF: Nop domain SF: Nop domain FA: Nop domain CF: PABP domain-like SF: Ribosomal protein L20 FA: Ribosomal protein L20 CF: PAP/OAS1 substrate-binding domain SF: PAP/OAS1 substrate-binding domain FA: Archaeal tRNA CCA-adding enzyme substrate-binding domain FA: Poly(A) polymerase, PAP, middle domain CF: Phage replication organizer domain SF: Phage replication organizer domain FA: Phage replication organizer domain CF: Poly A polymerase C-terminal region-like SF: Poly A polymerase C-terminal region-like FA: Poly A polymerase C-terminal region-like CF: Putative DNA-binding domain SF: Putative DNA-binding domain FA: DNA-binding N-terminal domain of transcription activators [ a.6.1.3 ] FA: Domains B1 and B5 of PheRS-beta, PheT FA: Excisionase-like [ a.6.1.7 ] CF: Rhabdovirus nucleoprotein-like SF: Rhabdovirus nucleoprotein-like FA: Rhabdovirus nucleocapsid protein CF: Ribbon-helix-helix SF: Ribbon-helix-helix FA: Arc/Mnt-like phage repressors [ a.43.1.1 ] FA: CopG-like [ a.43.1.3 ] FA: Met repressor, MetJ (MetR) [ a.43.1.5 ] FA: Omega transcriptional repressor FA: Trafficking protein A-like CF: Ribosomal protein L19 (L19e) SF: Ribosomal protein L19 (L19e) FA: Ribosomal protein L19 (L19e) CF: Ribosomal protein L7/12, oligomerisation (N-terminal) domain SF: Ribosomal protein L7/12, oligomerisation (N-terminal) domain FA: Ribosomal protein L7/12, oligomerisation (N-terminal) domain CF: Ribosomal protein S7 SF: Ribosomal protein S7 FA: Ribosomal protein S7 CF: RNase III domain-like SF: RNase III domain-like FA: RNase III catalytic domain-like CF: ROP-like SF: FHV B2 protein-like FA: FHV B2 protein-like CF: RPB6/omega subunit-like SF: RPB6/omega subunit-like FA: RPB6 CF: RuvA C-terminal domain-like SF: DNA helicase RuvA subunit, C-terminal domain FA: DNA helicase RuvA subunit, C-terminal domain CF: S13-like H2TH domain SF: S13-like H2TH domain FA: Middle domain of MutM-like DNA repair proteins [ a.156.1.2 ] FA: Ribosomal protein S13 CF: S15/NS1 RNA-binding domain SF: S15/NS1 RNA-binding domain FA: Ribosomal protein S15 CF: SAM domain-like SF: 5' to 3' exonuclease, C-terminal subdomain FA: 5' to 3' exonuclease, C-terminal subdomain SF: Barrier-to-autointegration factor, BAF FA: Barrier-to-autointegration factor, BAF SF: C-terminal domain of RNA polymerase alpha subunit FA: C-terminal domain of RNA polymerase alpha subunit [ a.60.3.1 ] SF: DNA polymerase beta, N-terminal domain-like FA: DNA polymerase beta, N-terminal domain-like SF: lambda integrase-like, N-terminal domain FA: lambda integrase-like, N-terminal domain SF: PsbU/PolX domain-like FA: DNA polymerase beta-like, second domain SF: RuvA domain 2-like FA: DNA helicase RuvA subunit, middle domain FA: Hef domain-like CF: Sec63 N-terminal domain-like SF: Sec63 N-terminal domain-like FA: Achaeal helicase C-terminal domain CF: Signal peptide-binding domain SF: Signal peptide-binding domain FA: Signal peptide-binding domain CF: Spectrin repeat-like SF: Ribosomal protein S20 FA: Ribosomal protein S20 CF: STAT-like SF: STAT FA: STAT CF: T4 endonuclease V SF: T4 endonuclease V FA: T4 endonuclease V [ a.18.1.1 ] CF: Tetracyclin repressor-like, C-terminal domain SF: Tetracyclin repressor-like, C-terminal domain FA: Tetracyclin repressor-like, C-terminal domain CF: Transcription factor IIA (TFIIA), alpha-helical domain SF: Transcription factor IIA (TFIIA), alpha-helical domain FA: Transcription factor IIA (TFIIA), alpha-helical domain CL: All beta proteins CF: Barrel-sandwich hybrid SF: Ribosomal L27 protein-like FA: ECR1 N-terminal domain-like FA: Ribosomal L27 protein CF: beta-Trefoil SF: DNA-binding protein LAG-1 (CSL) FA: DNA-binding protein LAG-1 (CSL) [ b.42.7.1 ] CF: Common fold of diphtheria toxin/transcription factors/cytochrome f SF: p53-like transcription factors FA: DNA-binding domain from NDT80 [ b.2.5.7 ] FA: DNA-binding protein LAG-1 (CSL) FA: p53 DNA-binding domain-like [ b.2.5.2 ] FA: Rel/Dorsal transcription factors, DNA-binding domain FA: RUNT domain [ b.2.5.6 ] FA: STAT DNA-binding domain [ b.2.5.5 ] FA: T-box [ b.2.5.4 ] CF: Core binding factor beta, CBF SF: Core binding factor beta, CBF FA: Core binding factor beta, CBF CF: Double-stranded beta-helix SF: cAMP-binding domain-like FA: cAMP-binding domain SF: Clavaminate synthase-like FA: AlkB-like SF: TRAP-like FA: Trp RNA-binding attenuation protein (TRAP) CF: Elongation factor/aminomethyltransferase common domain SF: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain FA: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain CF: EV matrix protein SF: EV matrix protein FA: EV matrix protein CF: FMT C-terminal domain-like SF: FMT C-terminal domain-like FA: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG) [ b.46.1.2 ] FA: Post formyltransferase domain CF: GroES-like SF: SacY-like RNA-binding domain FA: BglG-like antiterminator proteins CF: Hedgehog/intein (Hint) domain SF: Hedgehog/intein (Hint) domain FA: Intein (protein splicing domain) CF: Immunoglobulin-like beta-sandwich SF: E set domains FA: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain SF: Immunoglobulin FA: C1 set domains (antibody constant domain-like) FA: V set domains (antibody variable domain-like) CF: L21p-like SF: L21p-like FA: Ribosomal protein L21p CF: N-terminal domain of MutM-like DNA repair proteins SF: N-terminal domain of MutM-like DNA repair proteins FA: N-terminal domain of MutM-like DNA repair proteins [ b.113.1.1 ] CF: Nucleoplasmin-like/VP (viral coat and capsid proteins) SF: Positive stranded ssRNA viruses FA: Bromoviridae-like VP FA: Comoviridae-like VP FA: Nodaviridae-like VP FA: Tymoviridae-like VP SF: Satellite viruses FA: Satellite viruses SF: ssDNA viruses FA: Microviridae-like VP FA: Parvoviridae-like VP CF: OB-fold SF: Nucleic acid-binding proteins FA: Anticodon-binding domain FA: Cold shock DNA-binding domain-like FA: DNA helicase RuvA subunit, N-terminal domain FA: DNA ligase/mRNA capping enzyme postcatalytic domain FA: Myf domain FA: RecG "wedge" domain FA: RNA polymerase subunit RBP8 FA: RNB domain-like FA: Single strand DNA-binding domain, SSB FA: TRAM domain CF: PheT/TilS domain SF: PheT/TilS domain FA: B3/B4 domain of PheRS, PheT CF: PUA domain-like SF: PUA domain-like FA: PUA domain FA: SRA domain-like CF: Reductase/isomerase/elongation factor common domain SF: Translation proteins FA: Elongation factors FA: Gar1-like SnoRNP FA: Ribosomal protein L3 CF: Ribosomal protein L14 SF: Ribosomal protein L14 FA: Ribosomal protein L14 CF: Ribosomal protein L25-like SF: Ribosomal protein L25-like FA: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain FA: Ribosomal protein L25-like CF: SH3-like barrel SF: C-terminal domain of transcriptional repressors FA: FeoA-like SF: Cell growth inhibitor/plasmid maintenance toxic component FA: Kid/PemK SF: Chromo domain-like FA: "Histone-like" proteins from archaea SF: PAZ domain FA: PAZ domain SF: Translation proteins SH3-like domain FA: C-terminal domain of ribosomal protein L2 FA: Ribosomal protein L19 FA: Ribosomal proteins L24p and L21e CF: Sm-like fold SF: GatD N-terminal domain-like FA: GatD N-terminal domain-like SF: Sm-like ribonucleoproteins FA: Pleiotropic translational regulator Hfq FA: Sm motif of small nuclear ribonucleoproteins, SNRNP CF: Small protein B (SmpB) SF: Small protein B (SmpB) FA: Small protein B (SmpB) CF: SPOC domain-like SF: SPOC domain-like FA: Ku70 subunit middle domain FA: Ku80 subunit middle domain CF: Transcription factor IIA (TFIIA), beta-barrel domain SF: Transcription factor IIA (TFIIA), beta-barrel domain FA: Transcription factor IIA (TFIIA), beta-barrel domain [ b.56.1.1 ] CF: Trypsin-like serine proteases SF: Trypsin-like serine proteases FA: Eukaryotic proteases CF: ValRS/IleRS/LeuRS editing domain SF: ValRS/IleRS/LeuRS editing domain FA: ValRS/IleRS/LeuRS editing domain CL: Alpha and beta proteins (a+b) CF: Alpha-L RNA-binding motif SF: Alpha-L RNA-binding motif FA: Ribosomal protein S4 FA: Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain CF: Alpha-lytic protease prodomain-like SF: Prokaryotic type KH domain (KH-domain type II) FA: Prokaryotic type KH domain (KH-domain type II) CF: alpha/beta-Hammerhead SF: Ribosomal protein L16p/L10e FA: Ribosomal protein L10e FA: Ribosomal protein L16p CF: ATP-grasp SF: DNA ligase/mRNA capping enzyme, catalytic domain FA: ATP-dependent DNA ligase catalytic domain CF: Bacillus chorismate mutase-like SF: L30e-like FA: L30e/L7ae ribosomal proteins CF: beta-Grasp (ubiquitin-like) SF: TGS-like FA: TGS domain CF: beta-hairpin-alpha-hairpin repeat SF: Ankyrin repeat FA: Ankyrin repeat CF: Class II aaRS and biotin synthetases SF: Class II aaRS and biotin synthetases FA: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain CF: ClpS-like SF: ClpS-like FA: Ribosomal protein L7/12, C-terminal domain CF: Cystatin-like SF: Pre-PUA domain FA: Archaeosine tRNA-guanine transglycosylase, C2 domain CF: DCoH-like SF: GAD domain-like FA: GAD domain SF: RBP11-like subunits of RNA polymerase FA: RBP11/RpoL FA: RNA polymerase alpha subunit dimerisation domain CF: DNA breaking-rejoining enzymes SF: DNA breaking-rejoining enzymes FA: Eukaryotic DNA topoisomerase I, catalytic core FA: Lambda integrase-like, catalytic core [ d.163.1.1 ] CF: DNA clamp SF: DNA clamp FA: DNA polymerase III, beta subunit CF: DNA methylase specificity domain SF: DNA methylase specificity domain FA: TaqI C-terminal domain-like CF: DNA-binding domain SF: DNA-binding domain FA: DNA-binding domain from tn916 integrase FA: GCC-box binding domain FA: lambda integrase N-terminal domain FA: Methyl-CpG-binding domain, MBD CF: DNA-binding domain of intron-encoded endonucleases SF: DNA-binding domain of intron-encoded endonucleases FA: DNA-binding domain of intron-encoded endonucleases [ d.285.1.1 ] CF: DNase I-like SF: DNase I-like FA: DNase I-like CF: Dodecin subunit-like SF: N-terminal, heterodimerisation domain of RBP7 (RpoE) FA: N-terminal, heterodimerisation domain of RBP7 (RpoE) CF: dsRBD-like SF: dsRNA-binding domain-like FA: Double-stranded RNA-binding domain (dsRBD) FA: Ribosomal S5 protein, N-terminal domain CF: Eukaryotic type KH-domain (KH-domain type I) SF: Eukaryotic type KH-domain (KH-domain type I) FA: Eukaryotic type KH-domain (KH-domain type I) CF: Ferredoxin-like SF: ACT-like FA: Nickel responsive regulator NikR, C-terminal domain SF: Anticodon-binding domain of PheRS FA: Anticodon-binding domain of PheRS SF: Dimeric alpha+beta barrel FA: Lrp/AsnC-like transcriptional regulator C-terminal domain SF: PAP/Archaeal CCA-adding enzyme, C-terminal domain FA: Archaeal tRNA CCA-adding enzyme FA: Poly(A) polymerase, PAP, C-terminal domain SF: Ribosomal protein S10 FA: Ribosomal protein S10 SF: Ribosomal protein S6 FA: Ribosomal protein S6 SF: RNA-binding domain, RBD FA: Canonical RBD SF: Transposase IS200-like FA: Transposase IS200-like SF: Viral DNA-binding domain FA: Viral DNA-binding domain [ d.58.8.1 ] CF: GCM domain SF: GCM domain FA: GCM domain CF: Glutamine synthetase/guanido kinase SF: Glutamine synthetase/guanido kinase FA: GatB/GatE catalytic domain-like CF: His-Me finger endonucleases SF: His-Me finger endonucleases FA: Endonuclease I FA: HNH-motif [ d.4.1.1 ] FA: Intron-encoded homing endonucleases [ d.4.1.3 ] FA: Recombination endonuclease VII, N-terminal domain CF: Homing endonuclease-like SF: Homing endonucleases FA: Group I mobile intron endonuclease FA: Intein endonuclease [ d.95.2.2 ] CF: HPr-like SF: HPr-like FA: HPr-like CF: Hut operon positive regulatory protein HutP SF: Hut operon positive regulatory protein HutP FA: Hut operon positive regulatory protein HutP CF: IF3-like SF: C-terminal domain of ProRS FA: C-terminal domain of ProRS SF: Translation initiation factor IF3, C-terminal domain FA: Translation initiation factor IF3, C-terminal domain CF: Insert subdomain of RNA polymerase alpha subunit SF: Insert subdomain of RNA polymerase alpha subunit FA: Insert subdomain of RNA polymerase alpha subunit CF: L28p-like SF: L28p-like FA: Ribosomal protein L28 FA: Ribosomal protein L31p CF: L35p-like SF: L35p-like FA: Ribosomal protein L35p CF: Lesion bypass DNA polymerase (Y-family), little finger domain SF: Lesion bypass DNA polymerase (Y-family), little finger domain FA: Lesion bypass DNA polymerase (Y-family), little finger domain CF: Mago nashi protein SF: Mago nashi protein FA: Mago nashi protein CF: MbtH/L9 domain-like SF: L9 N-domain-like FA: Ribosomal protein L9 N-domain CF: Metallo-dependent phosphatases SF: Metallo-dependent phosphatases FA: DNA double-strand break repair nuclease CF: Metallo-hydrolase/oxidoreductase SF: Metallo-hydrolase/oxidoreductase FA: RNase Z-like CF: Microbial ribonucleases SF: Microbial ribonucleases FA: Bacterial ribonucleases FA: Fungal ribonucleases FA: Ribotoxin CF: MutS N-terminal domain-like SF: DNA repair protein MutS, domain I FA: DNA repair protein MutS, domain I [ d.75.2.1 ] SF: tRNA-intron endonuclease N-terminal domain-like FA: tRNA-intron endonuclease N-terminal domain-like CF: Nucleotidyltransferase SF: Nucleotidyltransferase FA: Archaeal tRNA CCA-adding enzyme catalytic domain FA: DNA polymerase beta-like FA: Poly A polymerase head domain-like FA: Poly(A) polymerase, PAP, N-terminal domain CF: Nudix SF: Nudix FA: MutY C-terminal domain-like CF: Origin of replication-binding domain, RBD-like SF: Origin of replication-binding domain, RBD-like FA: Relaxase domain FA: Replication initiation protein E1 [ d.89.1.2 ] FA: Replication protein Rep, nuclease domain FA: The origin DNA-binding domain of SV40 T-antigen CF: Phospholipase D/nuclease SF: Phospholipase D/nuclease FA: Tyrosyl-DNA phosphodiesterase TDP1 CF: Probable bacterial effector-binding domain SF: Probable bacterial effector-binding domain FA: Multidrug-binding domain of transcription activator BmrR FA: Rob transcription factor, C-terminal domain CF: Profilin-like SF: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors FA: Pheromone-binding domain of LuxR-like quorum-sensing transcription factors SF: SNARE-like FA: SRP alpha N-terminal domain-like CF: Prokaryotic ribosomal protein L17 SF: Prokaryotic ribosomal protein L17 FA: Prokaryotic ribosomal protein L17 CF: Pseudouridine synthase SF: Pseudouridine synthase FA: Pseudouridine synthase I TruA FA: Pseudouridine synthase II TruB CF: Replication modulator SeqA, C-terminal DNA-binding domain SF: Replication modulator SeqA, C-terminal DNA-binding domain FA: Replication modulator SeqA, C-terminal DNA-binding domain [ d.228.1.1 ] CF: Ribonuclease PH domain 2-like SF: Ribonuclease PH domain 2-like FA: Ribonuclease PH domain 2-like CF: Ribosomal L11/L12e N-terminal domain SF: Ribosomal L11/L12e N-terminal domain FA: Ribosomal L11/L12e N-terminal domain CF: Ribosomal protein L22 SF: Ribosomal protein L22 FA: Ribosomal protein L22 CF: Ribosomal protein L30p/L7e SF: Ribosomal protein L30p/L7e FA: Ribosomal protein L30p/L7e CF: Ribosomal protein L31e SF: Ribosomal protein L31e FA: Ribosomal protein L31e CF: Ribosomal protein L6 SF: Ribosomal protein L6 FA: Ribosomal protein L6 CF: Ribosomal protein L9 C-domain SF: Ribosomal protein L9 C-domain FA: Ribosomal protein L9 C-domain CF: Ribosomal protein S16 SF: Ribosomal protein S16 FA: Ribosomal protein S16 CF: Ribosomal protein S19 SF: Ribosomal protein S19 FA: Ribosomal protein S19 CF: Ribosomal protein S3 C-terminal domain SF: Ribosomal protein S3 C-terminal domain FA: Ribosomal protein S3 C-terminal domain CF: Ribosomal protein S5 domain 2-like SF: Ribosomal protein S5 domain 2-like FA: Ribonuclease PH domain 1-like FA: Translational machinery components CF: Ribosomal protein S8 SF: Ribosomal protein S8 FA: Ribosomal protein S8 CF: Ribosomal proteins S24e, L23 and L15e SF: Ribosomal proteins S24e, L23 and L15e FA: L15e FA: L23p CF: RL5-like SF: RL5-like FA: Ribosomal protein L5 CF: RNA bacteriophage capsid protein SF: RNA bacteriophage capsid protein FA: RNA bacteriophage capsid protein CF: RNase A-like SF: RNase A-like FA: Ribonuclease A-like CF: RPB5-like RNA polymerase subunit SF: RPB5-like RNA polymerase subunit FA: RPB5 CF: RRF/tRNA synthetase additional domain-like SF: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain FA: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain SF: Ribosome recycling factor, RRF FA: Ribosome recycling factor, RRF SF: ThrRS/AlaRS common domain FA: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain CF: SH2-like SF: SH2 domain FA: SH2 domain CF: Signal recognition particle alu RNA binding heterodimer, SRP9/14 SF: Signal recognition particle alu RNA binding heterodimer, SRP9/14 FA: Signal recognition particle alu RNA binding heterodimer, SRP9/14 CF: SMAD MH1 domain SF: SMAD MH1 domain FA: SMAD MH1 domain [ d.164.1.1 ] CF: SRF-like SF: SRF-like FA: SRF-like [ d.88.1.1 ] CF: SRP19 SF: SRP19 FA: SRP19 CF: ssDNA-binding transcriptional regulator domain SF: ssDNA-binding transcriptional regulator domain FA: Guide RNA binding protein gBP FA: Transcriptional coactivator PC4 C-terminal domain CF: TBP-like SF: Bet v1-like FA: AHSA1 domain SF: TATA-box binding protein-like FA: DNA repair glycosylase, N-terminal domain FA: TATA-box binding protein (TBP), C-terminal domain [ d.129.1.1 ] CF: Tombusvirus P19 core protein, VP19 SF: Tombusvirus P19 core protein, VP19 FA: Tombusvirus P19 core protein, VP19 CL: Alpha and beta proteins (a/b) CF: Adenine nucleotide alpha hydrolase-like SF: Nucleotidylyl transferase FA: Class I aminoacyl-tRNA synthetases (RS), catalytic domain CF: Anticodon-binding domain-like SF: Class II aaRS ABD-related FA: Anticodon-binding domain of Class II aaRS CF: Barstar-like SF: Ribosomal protein L32e FA: Ribosomal protein L32e CF: Cryptochrome/photolyase, N-terminal domain SF: Cryptochrome/photolyase, N-terminal domain FA: Cryptochrome/photolyase, N-terminal domain CF: Cytidine deaminase-like SF: Cytidine deaminase-like FA: Deoxycytidylate deaminase-like CF: Flavodoxin-like SF: Ribosomal protein S2 FA: Ribosomal protein S2 CF: Formyltransferase SF: Formyltransferase FA: Formyltransferase CF: Glutaminase/Asparaginase SF: Glutaminase/Asparaginase FA: Glutaminase/Asparaginase CF: HAD-like SF: HAD-like FA: phosphatase domain of polynucleotide kinase CF: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) SF: L domain-like FA: U2A'-like CF: P-loop containing nucleoside triphosphate hydrolases SF: P-loop containing nucleoside triphosphate hydrolases FA: ABC transporter ATPase domain-like FA: G proteins FA: Nitrogenase iron protein-like FA: Nucleotide and nucleoside kinases FA: RecA protein-like (ATPase-domain) FA: Tandem AAA-ATPase domain CF: Periplasmic binding protein-like I SF: Periplasmic binding protein-like I FA: L-arabinose binding protein-like CF: Periplasmic binding protein-like II SF: Periplasmic binding protein-like II FA: Phosphate binding protein-like CF: PIN domain-like SF: PIN domain-like FA: 5' to 3' exonuclease catalytic domain FA: PIN domain CF: Resolvase-like SF: Resolvase-like FA: gamma,delta resolvase, catalytic domain CF: Restriction endonuclease-like SF: Eukaryotic RPB5 N-terminal domain FA: Eukaryotic RPB5 N-terminal domain SF: Restriction endonuclease-like FA: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain FA: Exodeoxyribonuclease V beta chain (RecC), C-terminal domain FA: Restriction endonuclease BamHI [ c.52.1.3 ] FA: Restriction endonuclease BglI FA: Restriction endonuclease BglII [ c.52.1.5 ] FA: Restriction endonuclease BsobI FA: Restriction endonuclease BstyI FA: Restriction endonuclease EcoO109IR FA: Restriction endonuclease EcoRI FA: Restriction endonuclease EcoRV FA: Restriction endonuclease FokI, C-terminal (catalytic) domain [ c.52.1.12 ] FA: Restriction endonuclease HincII [ c.52.1.19 ] FA: Restriction endonuclease MspI [ c.52.1.23 ] FA: Restriction endonuclease MunI FA: Restriction endonuclease NaeI FA: Restriction endonuclease NgoIV [ c.52.1.10 ] FA: Restriction endonuclease PvuII [ c.52.1.6 ] FA: Very short patch repair (VSR) endonuclease [ c.52.1.15 ] FA: XPF/Rad1/Mus81 nuclease SF: tRNA-intron endonuclease catalytic domain-like FA: tRNA-intron endonuclease catalytic domain-like CF: Ribonuclease H-like motif SF: DNA repair protein MutS, domain II FA: DNA repair protein MutS, domain II SF: Methylated DNA-protein cysteine methyltransferase domain FA: Methylated DNA-protein cysteine methyltransferase domain SF: Ribonuclease H-like FA: DnaQ-like 3'-5' exonuclease FA: PIWI domain FA: Ribonuclease H FA: Transposase inhibitor (Tn5 transposase) [ c.55.3.4 ] SF: Translational machinery components FA: Ribosomal protein L18 and S11 CF: Ribosomal protein L13 SF: Ribosomal protein L13 FA: Ribosomal protein L13 CF: Ribosomal protein L4 SF: Ribosomal protein L4 FA: Ribosomal protein L4 CF: Ribosomal proteins L15p and L18e SF: Ribosomal proteins L15p and L18e FA: Ribosomal proteins L15p and L18e CF: S-adenosyl-L-methionine-dependent methyltransferases SF: S-adenosyl-L-methionine-dependent methyltransferases FA: (Uracil-5-)-methyltransferase FA: C5 cytosine-specific DNA methylase, DCM [ c.66.1.26 ] FA: DNA methylase TaqI, N-terminal domain FA: mRNA cap methylase FA: N6 adenine-specific DNA methylase, DAM CF: Thioredoxin fold SF: Thioredoxin-like FA: Thioltransferase CF: TIM beta/alpha-barrel SF: tRNA-guanine transglycosylase FA: tRNA-guanine transglycosylase SF: Xylose isomerase-like FA: Endonuclease IV CF: UDP-Glycosyltransferase/glycogen phosphorylase SF: UDP-Glycosyltransferase/glycogen phosphorylase FA: beta-Glucosyltransferase (DNA-modifying) CF: Uracil-DNA glycosylase-like SF: Uracil-DNA glycosylase-like FA: Mug-like FA: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 FA: Uracil-DNA glycosylase [ c.18.1.1 ] CF: vWA-like SF: vWA-like FA: Ku70 subunit N-terminal domain FA: Ku80 subunit N-terminal domain FA: RoRNP C-terminal domain-like CL: Coiled coil proteins CF: Parallel coiled-coil SF: Inovirus (filamentous phage) major coat protein FA: Inovirus (filamentous phage) major coat protein SF: Leucine zipper domain FA: Leucine zipper domain CL: Designed proteins CF: Zinc finger design SF: Zinc finger design FA: Zinc finger design CL: Low resolution protein structures CF: Computational models partly based on experimental data SF: Computational models partly based on experimental data FA: Computational models partly based on experimental data CF: Reovirus components SF: Reovirus components FA: Reovirus components CF: Ribosome and ribosomal fragments SF: Ribosome and ribosomal fragments FA: Large subunit FA: Ribosome complexes FA: Small subunit CF: RNA polymerase SF: RNA polymerase FA: RNA polymerase CF: Signal recognition particle (SRP) complex SF: Signal recognition particle (SRP) complex FA: Signal recognition particle (SRP) complex CL: Membrane and cell surface proteins and peptides CF: Single transmembrane helix SF: Preprotein translocase SecE subunit FA: Preprotein translocase SecE subunit SF: Sec-beta subunit FA: Sec-beta subunit CL: Multi-domain proteins (alpha and beta) CF: beta and beta-prime subunits of DNA dependent RNA-polymerase SF: beta and beta-prime subunits of DNA dependent RNA-polymerase FA: RNA-polymerase beta FA: RNA-polymerase beta-prime CF: DNA/RNA polymerases SF: DNA/RNA polymerases FA: DNA polymerase I FA: dsRNA phage RNA-dependent RNA-polymerase FA: Lesion bypass DNA polymerase (Y-family), catalytic domain FA: Reverse transcriptase FA: RNA-dependent RNA-polymerase FA: T7 RNA polymerase CF: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment SF: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment FA: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment CF: NSP3 homodimer SF: NSP3 homodimer FA: NSP3 homodimer CF: Prokaryotic type I DNA topoisomerase SF: Prokaryotic type I DNA topoisomerase FA: Prokaryotic type I DNA topoisomerase CF: Replication terminator protein (Tus) SF: Replication terminator protein (Tus) FA: Replication terminator protein (Tus) [ e.2.1.1 ] CF: Ribosomal protein L1 SF: Ribosomal protein L1 FA: Ribosomal protein L1 CF: Type II DNA topoisomerase SF: Type II DNA topoisomerase FA: Type II DNA topoisomerase CL: Peptides CF: Arg-rich RNA binding peptides SF: 30S ribosomal protein THX FA: 30S ribosomal protein THX SF: Box B RNA-binding N peptide FA: Box B RNA-binding N peptide SF: HIV-1 REV fragments FA: HIV-1 REV fragments SF: HTLV-1 peptide FA: HTLV-1 peptide SF: Ilarvirus coat protein N-terminal fragment FA: Ilarvirus coat protein N-terminal fragment SF: RSG-1.2 peptide FA: RSG-1.2 peptide SF: TAT peptides FA: TAT peptides CF: DNA-binding domains of HMG-I(Y) SF: DNA-binding domains of HMG-I(Y) FA: DNA-binding domains of HMG-I(Y) CF: Ribosomal protein L10 SF: Ribosomal protein L10 FA: Ribosomal protein L10 CF: Ribosomal protein L34p SF: Ribosomal protein L34p FA: Ribosomal protein L34p CF: Ribosomal protein S21p SF: Ribosomal protein S21p FA: Ribosomal protein S21p CF: TBP-binding domain of the transcription factor IIIb Brf1 subunit SF: TBP-binding domain of the transcription factor IIIb Brf1 subunit FA: TBP-binding domain of the transcription factor IIIb Brf1 subunit CL: Small proteins CF: beta-beta-alpha zinc fingers SF: beta-beta-alpha zinc fingers FA: Classic zinc finger, C2H2 CF: CCCH zinc finger SF: CCCH zinc finger FA: CCCH zinc finger CF: Glucocorticoid receptor-like (DNA-binding domain) SF: Glucocorticoid receptor-like (DNA-binding domain) FA: C-terminal, Zn-finger domain of MutM-like DNA repair proteins FA: Erythroid transcription factor GATA-1 FA: Nuclear receptor [ g.39.1.2 ] FA: Ribosomal protein L24e FA: Ribosomal protein S14 CF: Retrovirus zinc finger-like domains SF: Retrovirus zinc finger-like domains FA: Retrovirus zinc finger-like domains CF: Ribosomal protein L36 SF: Ribosomal protein L36 FA: Ribosomal protein L36 CF: Rubredoxin-like SF: Nop10-like SnoRNP FA: Nucleolar RNA-binding protein Nop10-like SF: RNA polymerase subunits FA: RBP12 subunit of RNA polymerase II SF: Zinc beta-ribbon FA: Transcriptional factor domain SF: Zn-binding ribosomal proteins FA: Ribosomal protein L32p FA: Ribosomal protein L33p FA: Ribosomal protein L37ae FA: Ribosomal protein L37e FA: Ribosomal protein L44e CF: Zn2/Cys6 DNA-binding domain SF: Zn2/Cys6 DNA-binding domain FA: Zn2/Cys6 DNA-binding domain [ g.38.1.1 ]