Installation: Just put files in working directory and use with pdb2gmx -ff test
If you use these files please cite:
Reshetnikov, R ; Golovin, A ; Spiridonova, V ; Kopylov, A ; Sponer, J. Structural Dynamics of Thrombin-Binding DNA Aptamer d(GGTTGGTGTGGTTGG) Quadruplex DNA Studied by Large-Scale Explicit Solvent Simulations. (2010). JOURNAL OF CHEMICAL THEORY AND COMPUTATION, Volume: 6, Issue: 10, Pages: 3003-3014