DotHelix: Motifs' Collection Map Results

References:

• Leontovich A.M.,Brodsky L.I., Gorbalenya A.E. Construction of the full local similarity map for two biopolymers, 1993, Biosystems, 30,57-63.[Word97 doc]
• Brodsky L.I., Ivanov V.V., Kalaidzidis Ya.L., Leontovich A.M., Nikolaev V.K., Feranchuk S.I., Drachev V.A. GeneBee-NET:Internet-based server for analyzing biopolymers structure, 1995, Biochemistry, 60, 8, 923-928. [Word97 doc]

Name	Value
Motif's power threshold - DotHelix	0
Motif's power threshold - noise upper bound	6
Motif's length threshold	7
Maximum number of motifs to plot	1000
Maximum number of motifs to output	50
Threshold of motif's homology percentage_	0.01
Accurate Dothelix	ON
Motif frequences recalc	ON
Normalize weight matrix	ON
Weight matrices	BLOSUM62

Sequences

>Q9VWH1 

MIRATSCALSTRPLRSPKAPSHRHKIRSIKTGARSPRDSFQLDYSIDFFKTYIDTQRFYA GHKLDFKHQSCAGGPGSGGAGGPGPGGGGGASGVVVVGGTSNSNNPAAAQQQQQQQQQQQ QQQQQQSGGNNPSNGSNSAVALSLAHPHAHASHAHSSHAHGSHAHALAIAHGHHGLLPSV VPQQQQQQQQQQQQQQQQQQAQQLPPGVGVASPLQQQQQQQQQQQQQQQQQQQQQQLINN GGVSAGTPTLLIGNGPSSSGAGTGSVSAAAAAAAAAAAASSSSSSLPHVAPHSLGLSPQS SADSQQFNIFPAIFSRQLNFSAGGQGGKLSMDELRPNLVGGLLGLQQGLLEDHASMQHGG VGQDTKFMSFQDQRLMGIGGSHENRLLSLASSVQDTRSPITTLEKSSSSSLNHQRKCSST PEDFSALYSGLPTPGMDSSSHHHTPAHTPPSRLSDHTISAEGAFKKLKPEPNSGLSTVSA GITSPGSGLSSLSQHAGHTPTTASCPTPARRRHRTTFTQEQLAELEAAFAKSHYPDIYCR EELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPSVIPSCNGMMRNIQGYSVSRGY QPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTNMGSVGVRQDSMGEFHANSRFPI PDSRGFELGMFAEPSLLSSRQKLMSSARVCSPEPIGPLQVHGMSPEDEWYNKSLSALRMN SSHHPNLSAPMLQYQT 

>Q9VWH1_AG 

EGAFKKLKPEPNSGPLGSSVPGGISSPGSGISGLPQHAGHTPTTASCPTPARRRHRTTFT QEQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAP SVIPSCNGMMRNIQGYSVSRGYQPYPHPNSINRYPQDLFQMGASSYPGMTQPFSMTHGSN MGAVGVRQDSMGKCFFFLHSVSFFLSRAQSTPHSVLSSPNFPTGKRVTACCCCAGERVVS AGTAGRNRMTAEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 

BLOSUM62 AMINO ACIDS DISTANCE MATRIX A C D E F G H I K L M N P Q R S T V W Y A 8 C 4 13 D 2 1 10 E 3 0 6 9 F 2 2 1 1 10 G 4 1 3 2 1 10 H 2 1 3 4 3 2 12 I 3 3 1 1 4 0 1 8 K 3 1 3 5 1 2 3 1 9 L 3 3 0 1 4 0 1 6 2 8 M 3 3 1 2 4 1 2 5 3 6 9 N 2 1 5 4 1 4 5 1 4 1 2 10 P 3 1 3 3 0 2 2 1 3 1 2 2 11 Q 3 1 4 6 1 2 4 1 5 2 4 4 3 9 R 3 1 2 4 1 2 4 1 6 2 3 4 2 5 9 S 5 3 4 4 2 4 3 2 4 2 3 5 3 4 3 8 T 4 3 3 3 2 2 2 3 3 3 3 4 3 3 3 5 9 V 4 3 1 2 3 1 1 7 2 5 5 1 2 2 1 2 4 8 W 1 2 0 1 5 2 2 1 1 2 3 0 0 2 1 1 2 1 15 Y 2 2 1 2 7 1 6 3 2 3 3 2 1 3 2 2 2 3 6 11

BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix

  
Motif 1-1, Power 26.1 Homology percent 93.5 Length 170
                      GI+SPGSG*S.L QHAGHTPTTASCPTPARRRHRTTFTQEQLAELEAAFAKSHYPDIYCR
>Q9VWH1      ( 481)   GITSPGSGLSSLSQHAGHTPTTASCPTPARRRHRTTFTQEQLAELEAAFAKSHYPDIYCR
>Q9VWH1_AG   (  23)   GISSPGSGISGLPQHAGHTPTTASCPTPARRRHRTTFTQEQLAELEAAFAKSHYPDIYCR

                      EELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPSVIPSCNGMMRNIQGYSVSRGY
>Q9VWH1      ( 541)   EELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPSVIPSCNGMMRNIQGYSVSRGY
>Q9VWH1_AG   (  83)   EELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPSVIPSCNGMMRNIQGYSVSRGY

                      QPYPH N++NRYPQDLFQMGASSYPGMTQPFSM.H.+NMG+VGVRQDSMG
>Q9VWH1      ( 601)   QPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTNMGSVGVRQDSMG
>Q9VWH1_AG   ( 143)   QPYPHPNSINRYPQDLFQMGASSYPGMTQPFSMTHGSNMGAVGVRQDSMG


  
Motif 1-2, Power 11.0 Homology percent 94.1 Length 34
                      M+ EDEWYNKSLSALRMNSSHHPNLSAPMLQYQT
>Q9VWH1      ( 703)   MSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT
>Q9VWH1_AG   ( 249)   MTAEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT


  
Motif 1-3, Power 6.3 Homology percent 100.0 Length 14
                      EGAFKKLKPEPNSG
>Q9VWH1      ( 461)   EGAFKKLKPEPNSG
>Q9VWH1_AG   (   1)   EGAFKKLKPEPNSG