Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~vanilin/3_1/tRNA_blastn.txt Дата изменения: Fri Oct 5 01:26:31 2007 Дата индексирования: Tue Oct 2 11:03:22 2012 Кодировка:

BLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
(76 letters)

Database: ss
272 sequences; 3,008,365 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE006668 AE006641 |AE006668| Sulfolobus solfataricus P2 section ... 30 0.15
AE006716 AE006641 |AE006716| Sulfolobus solfataricus P2 section ... 28 0.59
AE006713 AE006641 |AE006713| Sulfolobus solfataricus P2 section ... 28 0.59
AE006660 AE006641 |AE006660| Sulfolobus solfataricus P2 section ... 28 0.59
AE006646 AE006641 |AE006646| Sulfolobus solfataricus P2 section ... 28 0.59
AE006821 AE006641 |AE006821| Sulfolobus solfataricus P2 section ... 26 2.3
AE006751 AE006641 |AE006751| Sulfolobus solfataricus P2 section ... 26 2.3
AE006653 AE006641 |AE006653| Sulfolobus solfataricus P2 section ... 26 2.3
AE006908 AE006641 |AE006908| Sulfolobus solfataricus P2 section ... 24 9.1
AE006903 AE006641 |AE006903| Sulfolobus solfataricus P2 section ... 24 9.1
AE006899 AE006641 |AE006899| Sulfolobus solfataricus P2 section ... 24 9.1
AE006864 AE006641 |AE006864| Sulfolobus solfataricus P2 section ... 24 9.1
AE006802 AE006641 |AE006802| Sulfolobus solfataricus P2 section ... 24 9.1
AE006778 AE006641 |AE006778| Sulfolobus solfataricus P2 section ... 24 9.1
AE006749 AE006641 |AE006749| Sulfolobus solfataricus P2 section ... 24 9.1
AE006656 AE006641 |AE006656| Sulfolobus solfataricus P2 section ... 24 9.1
AE006655 AE006641 |AE006655| Sulfolobus solfataricus P2 section ... 24 9.1

>AE006668 AE006641 |AE006668| Sulfolobus solfataricus P2 section 27 of
272 of the complete genome.
Length = 13093

Score = 30.2 bits (15), Expect = 0.15
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 44 tggtcgcaggttcgaatcc 62
||||||| |||||||||||
Sbjct: 5248 tggtcgcgggttcgaatcc 5230


>AE006716 AE006641 |AE006716| Sulfolobus solfataricus P2 section 75 of
272 of the complete genome.
Length = 13396

Score = 28.2 bits (14), Expect = 0.59
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 7 ttagctcagttggt 20
||||||||||||||
Sbjct: 8402 ttagctcagttggt 8415


>AE006713 AE006641 |AE006713| Sulfolobus solfataricus P2 section 72 of
272 of the complete genome.
Length = 7448

Score = 28.2 bits (14), Expect = 0.59
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 45 ggtcgcaggttcgaatcc 62
|||||| |||||||||||
Sbjct: 2925 ggtcgcgggttcgaatcc 2908


>AE006660 AE006641 |AE006660| Sulfolobus solfataricus P2 section 19 of
272 of the complete genome.
Length = 13077

Score = 28.2 bits (14), Expect = 0.59
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 45 ggtcgcaggttcgaatcc 62
|||||| |||||||||||
Sbjct: 9378 ggtcgcgggttcgaatcc 9361


>AE006646 AE006641 |AE006646| Sulfolobus solfataricus P2 section 5 of
272 of the complete genome.
Length = 7990

Score = 28.2 bits (14), Expect = 0.59
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 8 tagctcagttggtagagc 25
|||||||||||| |||||
Sbjct: 7723 tagctcagttggcagagc 7740


>AE006821 AE006641 |AE006821| Sulfolobus solfataricus P2 section 180
of 272 of the complete genome.
Length = 10806

Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 18 ggtagagcagttg 30
|||||||||||||
Sbjct: 1705 ggtagagcagttg 1717


>AE006751 AE006641 |AE006751| Sulfolobus solfataricus P2 section 110
of 272 of the complete genome.
Length = 10129

Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 13 cagttggtagagc 25
|||||||||||||
Sbjct: 6887 cagttggtagagc 6875


>AE006653 AE006641 |AE006653| Sulfolobus solfataricus P2 section 12 of
272 of the complete genome.
Length = 8607

Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 28 ttgacttttaatc 40
|||||||||||||
Sbjct: 5821 ttgacttttaatc 5833


>AE006908 AE006641 |AE006908| Sulfolobus solfataricus P2 section 267
of 272 of the complete genome.
Length = 12816

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Minus


Query: 49 gcaggttcgaat 60
||||||||||||
Sbjct: 7739 gcaggttcgaat 7728


>AE006903 AE006641 |AE006903| Sulfolobus solfataricus P2 section 262
of 272 of the complete genome.
Length = 9623

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Minus


Query: 28 ttgacttttaat 39
||||||||||||
Sbjct: 3104 ttgacttttaat 3093


>AE006899 AE006641 |AE006899| Sulfolobus solfataricus P2 section 258
of 272 of the complete genome.
Length = 10222

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Plus


Query: 32 cttttaatcaat 43
||||||||||||
Sbjct: 4771 cttttaatcaat 4782


>AE006864 AE006641 |AE006864| Sulfolobus solfataricus P2 section 223
of 272 of the complete genome.
Length = 10105

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Plus


Query: 30 gacttttaatca 41
||||||||||||
Sbjct: 7047 gacttttaatca 7058


>AE006802 AE006641 |AE006802| Sulfolobus solfataricus P2 section 161
of 272 of the complete genome.
Length = 10029

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Minus


Query: 33 ttttaatcaatt 44
||||||||||||
Sbjct: 7428 ttttaatcaatt 7417


>AE006778 AE006641 |AE006778| Sulfolobus solfataricus P2 section 137
of 272 of the complete genome.
Length = 10554

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Minus


Query: 14 agttggtagagc 25
||||||||||||
Sbjct: 693 agttggtagagc 682


>AE006749 AE006641 |AE006749| Sulfolobus solfataricus P2 section 108
of 272 of the complete genome.
Length = 13962

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Plus


Query: 20 tagagcagttga 31
||||||||||||
Sbjct: 8393 tagagcagttga 8404


>AE006656 AE006641 |AE006656| Sulfolobus solfataricus P2 section 15 of
272 of the complete genome.
Length = 14326

Score = 24.3 bits (12), Expect = 9.1
Identities = 12/12 (100%)
Strand = Plus / Plus


Query: 33 ttttaatcaatt 44
||||||||||||
Sbjct: 7159 ttttaatcaatt 7170


>AE006655 AE006641 |AE006655| Sulfolobus solfataricus P2 section 14 of
272 of the complete genome.
Length = 11701

Score = 24.3 bits (12), Expect = 9.1
Identities = 15/16 (93%)
Strand = Plus / Minus


Query: 47 tcgcaggttcgaatcc 62
|||| |||||||||||
Sbjct: 4307 tcgcgggttcgaatcc 4292


Database: ss
Posted date: Oct 5, 2007 1:30 AM
Number of letters in database: 3,008,365
Number of sequences in database: 272

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 272
Number of Hits to DB: 1485
Number of extensions: 90
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 76
Length of database: 3,008,365
Length adjustment: 14
Effective length of query: 62
Effective length of database: 3,004,557
Effective search space: 186282534
Effective search space used: 186282534
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)