Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~vika-chan/projects/BLAST/CDS_ramka.blast Дата изменения: Tue Nov 10 01:46:26 2009 Дата индексирования: Tue Nov 24 18:38:05 2009 Кодировка:

BLASTP 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Rat Stomach Serotonin receptor-related gene
(90 letters)

Database: ramki
13 sequences; 610 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

D89965_5 [19 - 432] Rattus norvegicus mRNA for RSS, complete cds. 188 4e-53
D89965_13 [375 - 1] (REVERSE SENSE) Rattus norvegicus mRNA for R... 12 5.5

>D89965_5 [19 - 432] Rattus norvegicus mRNA for RSS, complete cds.
Length = 138

Score = 188 bits (478), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1 MALMHFQFTFKQFEQRKSIRSTARKARDDFVVVQTADLFHVAFHYGIAQRGLTITSDDHM 60
MALMHFQFTFKQFEQRKSIRSTARKARDDFVVVQTADLFHVAFHYGIAQRGLTITSDDHM
Sbjct: 49 MALMHFQFTFKQFEQRKSIRSTARKARDDFVVVQTADLFHVAFHYGIAQRGLTITSDDHM 108

Query: 61 AVTAYAYYSCHELTPWLRIQSTNPVQKYGA 90
AVTAYAYYSCHELTPWLRIQSTNPVQKYGA
Sbjct: 109 AVTAYAYYSCHELTPWLRIQSTNPVQKYGA 138



Score = 14.6 bits (26), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 52 LTITSDD 58
+T+T DD
Sbjct: 8 VTVTGDD 14


>D89965_13 [375 - 1] (REVERSE SENSE) Rattus norvegicus mRNA for
RSS, complete cds.
Length = 125

Score = 12.3 bits (20), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 4/10 (40%), Positives = 6/10 (60%)

Query: 8 FTFKQFEQRK 17
FT + +RK
Sbjct: 55 FTLFELFERK 64


Database: ramki
Posted date: Nov 10, 2009 1:40 AM
Number of letters in database: 610
Number of sequences in database: 13

Lambda K H
0.327 0.134 0.409

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13
Number of Hits to DB: 201
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 610
Length adjustment: 19
Effective length of query: 71
Effective length of database: 363
Effective search space: 25773
Effective search space used: 25773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.4 bits)
S2: 18 (11.5 bits)