Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~xenia_l/PF00206_seed.msf Дата изменения: Sun Mar 28 01:42:36 2010 Дата индексирования: Tue Oct 2 03:32:06 2012 Кодировка:

GDC ******** GeneDoc Multiple Sequence Alignment Editor ********
GDC 0109b30190000cffffffffffff000000000000000000808080c0c0c0ffff
GDC ff000000000000f43f000000000000f43f000000000000f03f0000000000
GDC 00f03f00A000300000190000cA54696d6573204e657720526f6d616e00A0
GDC 0320002000000000000000000000601444e000245510003535400044b520
GDC 00546595700064c49564d002846554d435f45434f4c492f31322d3334322
GDC c0d0a46554d435f42414353552f31312d3334302c0d0a415350415f42414
GDC 353552f31362d3334352c0d0a415350415f505345464c2f31392d3335312
GDC c0d0a415350415f534849464c2f31332d3334352c0d0a46554d435f53554
GDC c534f2f312d3331352c0d0a41524c595f45434f4c492f362d3330312c0d0
GDC a41524c595f43484c52452f31382d3331332c0d0a41524c595f48554d414
GDC e2f31312d3330352c0d0a41524c59315f414e41504c2f31312d3330352c0
GDC d0a41524c595f534348504f2f31322d3330362c0d0a41524c595f43414e4
GDC 14c2f31372d3331322c0d0a505552385f42414353552f332d3238362c0d0
GDC a504341425f50534550552f382d3330302c0d0a505552385f45434f4c492
GDC f31342d3332312c0d0a46554d43315f4252414a412f32322d3335322c0d0
GDC a46554d485f59454153542f33362d3336372c0d0a46554d485f48554d414
GDC e2f35382d333839293b0d0a00BBAABAAA0000002a000a00020001B20AAA0
GDC 00a203a2000203a200000000000000059400000000000000000000c50580
GDC 00000ffff000047580000ff00ff000041475358000000ffffff005643414
GDC 7444e535450580000ff00ffff00484b525800ff00000000ff4544580000f
GDC f000000ff484b5245445800ffffff0000ff48524551444e425a5800ff000
GDC 000ff005957484b524551444e5354425a580000000000ff00494c5641580
GDC 0ff00008080804659574858000000ff808080494c564341474d465957485
GDC 4505800ffffff0000000c505800000000000000475800000000000000414
GDC 347535800000000000000564147444e5354505800000000000000484b525
GDC 80000000000000045445800000000000000484b524544580000000000000
GDC 048524551444e425a5800000000000000435957484b524551444e5354425
GDC a5800000000000000494c564158000000000000004659574858000000000
GDC 00000494c564341474d46595748545058000000000000000300ffffff000
GDC 00000ffffff80808000000000c0c0c00000ABBBBBBBBBBBBBB00ff00A001
GDC 200010001000100010001000100010001000100010001000100010001000
GDC 1000100010001A0018AA000000000000000000000003A00ff00A00000000
GDC 008056400000000000805140000000000000494000000200000000000014
GDC 40A0000000098b20c4100000000102506410000000018980641000000007
GDC 8b10b4100AAABB00005374616e646172640046464c4c5353535359592a2a
GDC 43432a574c4c4c4c5050505048485151525252524949494d545454544e4e
GDC 4b4b5353525256565656414141414444454547474747002d2d2d2d2d2d2d
GDC 2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d4d2d
GDC 2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d00BBBB
GDC B00000000000000120000000000000000000000000000000000000000000
GDC 000000000000000000000000000000003000000000000BBAB00120000000
GDC 000000000000000000000000000000201b7B000000000000594000000000
GDC 000054400000000000004e4000DAAB000000ffffff0302014445484b524e
GDC 5153540000ff00ff0000024c49564d4659574147435000ff000000ff0004
GDC 014445484b520000ff00ff0000024e5153540000ff00ff8000034c49564d
GDC 46595700ff000000ff0004414700ff0000008000080144450000ff00ff00
GDC 0002484b5200ffffffff0000034e510000ff00ff800004535400ffffffff
GDC 8000054c495600ff000000ff000646595700ffffff00ff0007414700ff00
GDC 00008000084d4300ffffff0080000000000000Affffff80808000A
PF00206_seed.msf MSF: 344 Type: P March 28, 2010 03:42 Check: 7989 ..

Name: FUMC_ECOLI/12-342 Len: 344 Check: 7165 Weight: 1.00
Name: FUMC_BACSU/11-340 Len: 344 Check: 6628 Weight: 1.00
Name: ASPA_BACSU/16-345 Len: 344 Check: 9126 Weight: 1.00
Name: ASPA_PSEFL/19-351 Len: 344 Check: 8115 Weight: 1.00
Name: ASPA_SHIFL/13-345 Len: 344 Check: 3022 Weight: 1.00
Name: FUMC_SULSO/1-315 Len: 344 Check: 8915 Weight: 1.00
Name: ARLY_ECOLI/6-301 Len: 344 Check: 7846 Weight: 1.00
Name: ARLY_CHLRE/18-313 Len: 344 Check: 3000 Weight: 1.00
Name: ARLY_HUMAN/11-305 Len: 344 Check: 7899 Weight: 1.00
Name: ARLY1_ANAPL/11-305 Len: 344 Check: 6969 Weight: 1.00
Name: ARLY_SCHPO/12-306 Len: 344 Check: 8887 Weight: 1.00
Name: ARLY_CANAL/17-312 Len: 344 Check: 270 Weight: 1.00
Name: PUR8_BACSU/3-286 Len: 344 Check: 4237 Weight: 1.00
Name: PCAB_PSEPU/8-300 Len: 344 Check: 4095 Weight: 1.00
Name: PUR8_ECOLI/14-321 Len: 344 Check: 8135 Weight: 1.00
Name: FUMC1_BRAJA/22-352 Len: 344 Check: 7147 Weight: 1.00
Name: FUMH_YEAST/36-367 Len: 344 Check: 9864 Weight: 1.00
Name: FUMH_HUMAN/58-389 Len: 344 Check: 6669 Weight: 1.00

//

1 50
FUMC_ECOLI/12-342 GAIDVPADKL WGAQTQRSLE HFRIS..TEK MPTSLIHALA LTKRAAAKVN
FUMC_BACSU/11-340 GEVKVPADKF WGAQTQRSKE NFKIG..SEK MPMRVVKAFA ILKRSTALAN
ASPA_BACSU/16-345 GEKQIEADVY YGIQTLRASE NFPITGYKIH EE..MINALA IVKKAAALAN
ASPA_PSEFL/19-351 GVLEVPAQAY YGIQTLRAVN NFRLSGVPIS HYPKLVVGLA MVKQAAADAN
ASPA_SHIFL/13-345 GTREVPADAY YGVHTLRAIE NFYISNNKIS DIPEFVRGMV MVKKAAAMAN
FUMC_SULSO/1-315 MKYTDTAPKL FMNTGTKFPR RIIWS..... ........MG VLKKSCAKVN
ARLY_ECOLI/6-301 GRFTQAADQR FKQFNDSLRF DYRLAEQDIV .......GSV AWSKALVTVG
ARLY_CHLRE/18-313 GRFTGKTDPL MEKFNESLPF DKRLWAEDIK .......GSQ AYAKALAKAG
ARLY_HUMAN/11-305 GRFVGAVDPI MEKFNASIAY DRHLWEVDVQ .......GSK AYSRGLEKAG
ARLY1_ANAPL/11-305 GRFVGSTDPI MQMLSTSIST EQRLSEVDIQ .......ASI AYAKALEKAG
ARLY_SCHPO/12-306 GRFSGATDPL MAEFNKSIYS GKEMCEEDVI .......GSM AYAKALCQKN
ARLY_CANAL/17-312 GRFTGATDPL MDLYNASLPY DKVMYDADLT .......GTK VYTQGLNKLG
PUR8_BACSU/3-286 ERYS..RPEM SAIWTDENRF QAWLE..... .......VEI LACEAWAELG
PCAB_PSEPU/8-300 AYFT..APAM REIFSDRGRL QGMLD..... .......FEA ALARAEAAAG
PUR8_ECOLI/14-321 GRYGDKVSAL RGIFSEYGLL KFRVQVEVR. .......WLQ KLAAHAAIKE
FUMC1_BRAJA/22-352 GPIEVPSDRY WGAQTERSRQ NFRIG..TDR MPISLVHALG IVKLAAAQSN
FUMH_YEAST/36-367 GEIHVPADKY WGAQTQRSFQ NFKIGGARER MPLPLVHAFG VLKKSAAIVN
FUMH_HUMAN/58-389 GELKVPNDKY YGAQTVRSTM NFKIGGVTER MPTPVIKAFG ILKRAAAEVN

51 100
FUMC_ECOLI/12-342 EDLGLLSEEK ASAIRQAADE VLA.GQHDDE FPLAIWQTGS GTQSNMNMNE
FUMC_BACSU/11-340 KRLGNLDAEK AEAIAAVCDD VLK.GKYDDN FPLVVWQTGS GTQSNMNMNE
ASPA_BACSU/16-345 MDVKRLYEGI GQAIVQAADE ILE.GKWHDQ FIVDPIQGGA GTSMNMNANE
ASPA_PSEFL/19-351 RELGQLSERK HAAISEACAR LIR.GDFHEE FVVDMIQGGA GTSTNMNANE
ASPA_SHIFL/13-345 KELQTIPKSV ANAIIAACDE VLNNGKCMDQ FPVDVYQGGA GTSVNMNTNE
FUMC_SULSO/1-315 ADLGLLDKKI ADSIIKASDD LID.GKLDDK IVLDVFQTGS GTGLNMNVNE
ARLY_ECOLI/6-301 VLT....AEE QAQLEEALNV LLEDVRARPQ QILESDAEDI HSWVEGKLID
ARLY_CHLRE/18-313 ILA....HDE AVTIVEGLAK VAEEWKAG.A FVIKAGDEDI HTANERRLTE
ARLY_HUMAN/11-305 LLT....KAE MDQILHGLDK VAEEWAQG.T FKLNSNDEDI HTANERRLKE
ARLY1_ANAPL/11-305 ILT....KTE LEKILSGLEK ISEELSKG.V IVVTQSDEDI QTANERRLKE
ARLY_SCHPO/12-306 VIS....EEE LNSILKGLEQ IQREWNSG.Q FVLEPSDEDV HTANERRLTE
ARLY_CANAL/17-312 LIT....TEE LNLIHQGLEQ IRQEWHDN.K FIIKAGDEDI HTANERRLGE
PUR8_BACSU/3-286 VIP....... .KEDVKVMRE NAS.FDINRI LEIEKDTRHD VVAFTRAVSE
PCAB_PSEPU/8-300 LVP....HSA VAAIEAACKA ERYDVGAL.A NAIATAGNSA IPLVKA.LGK
PUR8_ECOLI/14-321 VPA......F AADAIGYLDA IVASFSEEDA ARIKTIERTT NHDVKA.VEY
FUMC1_BRAJA/22-352 RELGLLDQRR ASAIIRAARE VID.GSLDDH FPLVVWQTGS GTQTNMNLNE
FUMH_YEAST/36-367 ESLGGLDPKI SKAIQQAADE VAS.GKLDDH FPLVVFQTGS GTQSNMNANE
FUMH_HUMAN/58-389 QDYG.LDPKI ANAIMKAADE VAE.GKLNDH FPLVVWQTGS GTQTNMNVNE

101 150
FUMC_ECOLI/12-342 VLANRASELL GGVRGMERKV HPNDDVNKSQ SSNDVFPTAM HVAALLALRK
FUMC_BACSU/11-340 VVANRATALL KEK.NSDQTI HPNDDVNRSQ SSNDTFPTAM HVAAVLAVYE
ASPA_BACSU/16-345 VIGNRALEIM GHKKGDYIHL SPNTHVNMSQ STNDVFPTAI HISTLKLL.E
ASPA_PSEFL/19-351 VIANIALEAM GHQKGEYQYL HPNNDVNMAQ STNDAYPTAI RLGLLLGH.D
ASPA_SHIFL/13-345 VLANIGLELM GHQKGEYQYL NPNDHVNKCQ STNDAYPTGF RIAVYSSL.I
FUMC_SULSO/1-315 VIAEVASSYS N......LKV HPNDHVNFGQ SSNDTVPTAI RIAAVAEVTN
ARLY_ECOLI/6-301 KVG....... .......... QLGKKLHTGR SRNDQVATDL KLWCKDTVSE
ARLY_CHLRE/18-313 LVG....... .......... AVGGKLHTGR SRNDQVATDY RLWLVGQVEV
ARLY_HUMAN/11-305 LIG....... .......... ATAGKLHTGR SRNDQVVTDL RLWMRQTCST
ARLY1_ANAPL/11-305 LIG....... .......... DIAGKLHTGR SRNEQVVTDL KLFMKNSLSI
ARLY_SCHPO/12-306 IIG....... .......... DVAGKLHTGR SRNDQVTTDL RLWLCRKIKE
ARLY_CANAL/17-312 IIGK...... .......... NISGKVHTGR SRNDQVATDM RIFVRESLLN
PUR8_BACSU/3-286 SLG....... .......... EERKWVHYGL TSTDVVDTAL SYLLKQAN.D
PCAB_PSEPU/8-300 VIA......S G.......VP EAERYVHLGA TSQDAMDTGL VLQLRDAL.D
PUR8_ECOLI/14-321 FLK....EKV AE...IPELH AVSEFIHFAC TSEDINNLSH ALMLKTARDE
FUMC1_BRAJA/22-352 VIANRANELL GGELGAKKPV HPNDHVNMSQ SSNDSFPTAM HIAAASRITA
FUMH_YEAST/36-367 VISNRAIEIL GGKIGSKQ.V HPNNHCNQSQ SSNDTFPTVM HIAASLQIQN
FUMH_HUMAN/58-389 VISNRAIEML GGELGSKIPV HPNDHVNKSQ SSNDTFPTAM HIAAAIEVHE

151 200
FUMC_ECOLI/12-342 QLIPQLKTLT QTLNEKSRAF ADIVKIGRTH LQDATPLTLG QEISGWVAML
FUMC_BACSU/11-340 QLVPALDQLR NTLDEKAKAY NDIVKIGRTH LQDATPLTLG QEISGWVHML
ASPA_BACSU/16-345 KLLKTMEDMH SVFKQKAQEF DSVIKMGRTH LQDAVPIRLG QEFEAYSRVL
ASPA_PSEFL/19-351 ALLASLDSLI QAFAAKGAEF SHVLKMGRTQ LQDAVPMTLG QEFRAFATTL
ASPA_SHIFL/13-345 KLVDAINQLR EGFERKAVEF QDILKMGRTQ LQDAVPMTLG QEFRAFSILL
FUMC_SULSO/1-315 RLLPALQQII SSLNKKAEEY KDVIKAGRTH LRDALPVTLG QELSAYADAF
ARLY_ECOLI/6-301 .LLTANRQLQ SALVETAQNN QDAVMPGYTH LQRAQPVTFA HWCLAYVEML
ARLY_CHLRE/18-313 .MRSEVGELM RVAADRSEAE VEVLMPGFTH LQNAMTVRWS HWLMSHAAAW
ARLY_HUMAN/11-305 .LSGLLWELI RTMVDRAEAE RDVLFPGYTH LQRAQPIRWS HWILSHAVAL
ARLY1_ANAPL/11-305 .ISTHLLQLI KTLVERAAIE IDVILPGYTH LQKAQPIRWS QFLLSHAVAL
ARLY_SCHPO/12-306 .VEVYVINLL KVFTNRAEME IDVIMSGYTH LQRAQPVRWS HFLMSHALPL
ARLY_CANAL/17-312 .LSKILHQFI TAILERAHKE IDVLMPGYTH LQKAQPIRWA HWLSSYATYF
PUR8_BACSU/3-286 ILLKDLERFV DIIKEKAKEH KYTVMMGRTH GVHAEPTTFG LKLALWHEEM
PCAB_PSEPU/8-300 LIEADLGKLA DTLSQQALKH ADTPMVGRTW LQHATPVTLG MKLAGVLGAL
PUR8_ECOLI/14-321 VILPYWRQLI DGIKDLAVQY RDIPLLSRTH GQPATPSTIG K..EMANVAY
FUMC1_BRAJA/22-352 DLVPALGELL RALRKKEKEF AKIVKIGRTH TQDATPLTLG QEFSGYAAQV
FUMH_YEAST/36-367 ELIPELTNLK NALEAKSKEF DHIVKIGRTH LQDATPLTLG QEFSGYVQQV
FUMH_HUMAN/58-389 VLLPGLQKLH DALDAKSKEF AQIIKIGRTH TQDAVPLTLG QEFSGYVQQV

201 250
FUMC_ECOLI/12-342 EHNLKHIEYS L.PHVAELAL GGTAVGTGLN THP.EYARRV ADELA..VIT
FUMC_BACSU/11-340 DRSKEMILEA TDKMRALAIG G.TAVGTGIN AHP.EFGELV SEEIT..KLT
ASPA_BACSU/16-345 ERDIKRIKQS R.QHLYEVNM GATAVGTGLN ADP.EYIKQV VKHLA..DIS
ASPA_PSEFL/19-351 GEDLARLKTL APELLTEVNL GGTAIGTGIN ADP.RYQALA VQRLA..TIS
ASPA_SHIFL/13-345 KEEVKNIQRT A.ELLLEVNL GATAIGTGLN TPK.EYSPLA VKKLA..EVT
FUMC_SULSO/1-315 QHEHEQVMNI L.EYVKELPI GGTATGTGLN SHP.EFQERV INEIN..RIT
ARLY_ECOLI/6-301 ARDESRLQDA LKRLDVSPLG CGALAGTAYE IDR.E...QL AGWLG...FA
ARLY_CHLRE/18-313 QRDDMRLRDL LPRVATLPLG SGALAGNPFL VDR.Q...FI AKELG...FG
ARLY_HUMAN/11-305 TRDSERLLEV RKRINVLPLG SGAIAGNPLG VDR.E...LL RAELN...FG
ARLY1_ANAPL/11-305 TRDSERLGEV KKRINVLPLG SGALAGNPLD IDR.E...ML RSELE...FA
ARLY_SCHPO/12-306 LGDLGRLRQL YTRVSQLPLG AGALAGNPFN VDR.E...FL RKELG...FE
ARLY_CANAL/17-312 TEDYKRLQEI ITRVNQSPLG SGALAGHPYG IDR.E...FL AKGLG...FD
PUR8_BACSU/3-286 KRNLERFKQA KAGIEVGKIS G..AVGTYAN IDP.FVEQYV CEKLG.....
PCAB_PSEPU/8-300 TRHRQRLQEL GPPCWCCSSG GASGSLAALG SKAMPVAEAL AEQLK...LS
PUR8_ECOLI/14-321 RMERQ.YRQL NQVEILGKIN GAVGNYNAHI AAY.P..EVD WHQFSEEFVT
FUMC1_BRAJA/22-352 ESGIARLKVA V.KELYPLAQ GGTAVGTGLN AKP.RFARLF AKHVA..GIT
FUMH_YEAST/36-367 ENGIQRVAHS L.KTLSFLAQ GGTAVGTGLN TKP.GFDVKI AEQIS..KET
FUMH_HUMAN/58-389 KYAMTRIKAA M.PRIYELAA GGTAVGTGLN TRI.GFAEKV AAKVA..ALT

251 300
FUMC_ECOLI/12-342 CAPFVTAPNK FEALATCDAL VQAHGALKGL AASLMKI.AN DVRWLASGPR
FUMC_BACSU/11-340 GQTFSSSPNK FHALTSHDEI TYAHGALKAL AADLMKI.AN DVRWLASGPR
ASPA_BACSU/16-345 GLPLVGADHL VDATQNTDAY TEVSASLKVC MMNMSKI.AN DLRLMASGPR
ASPA_PSEFL/19-351 GQPLVPAADL IEATSDMGAF VLFSGMLKRT AVKLSKI.CN DLRLLSSGPR
ASPA_SHIFL/13-345 GFPCVPAEDL IEATSDCGAY VMVHGALKRL AVKMSKI.CN DLRLLSSGPR
FUMC_SULSO/1-315 GLG.FKPANR FRAMRLLTDL LLLSGALRNI AVDLYRLG.Q DIRLMFSGPL
ARLY_ECOLI/6-301 S....ATRNS LDSVSDRDHV LELLSAAAIG MVHLSRF.AE DLIFFNTGE.
ARLY_CHLRE/18-313 GG...VCPNS MDAVSDRDFV IETVFAASLL CVHLSRW.AE DLIIYSSGP.
ARLY_HUMAN/11-305 A....ITLNS MDATSERDFV AEFLFWASLC MTHLSRM.AE DLILYCTKE.
ARLY1_ANAPL/11-305 S....ISLNS MDAISERDFV VEFLSVATLL LIHLSKM.AE DLIIYSTSE.
ARLY_SCHPO/12-306 G....IIMNS MNAVGDRDFV IEFMFWAGMV MLHISRF.AE DLIIYSSSE.
ARLY_CANAL/17-312 G....VIGNS LTAVSDRDFV VESLFWSTLF MNHISRF.SE DLIIYSSGE.
PUR8_BACSU/3-286 L....KAAPI STQTLQRDRH ADYMATLALI ATSIEKF.AV EIRGLQKSE.
PCAB_PSEPU/8-300 L....PEQPW H...TQRDRL VEFASVLGLV AGSLGKFG.R DVSLLMQTE.
PUR8_ECOLI/14-321 SLGIQWNPYT T.QIEPHDYI AELFDCVARF NTILIDF.DR DVWGYIA...
FUMC1_BRAJA/22-352 KLPFTSAANK FEALASNDAY VLAHGAISSV ATGLFKI.AN DIRLLGSGPR
FUMH_YEAST/36-367 GLKFQTAPNK FEALAAHDAI VECSGALNTL ACSLFKI.AQ DIRYLGSGPR
FUMH_HUMAN/58-389 GLPFVTAPNK FEALAAHDAL VELSGAMNTT ACSLMKI.AN DIRFLGSGPR

301 344
FUMC_ECOLI/12-342 CGIGEISIPE NEP..GSSIM PGKVNPTQCE A...LTMLCC QVMG
FUMC_BACSU/11-340 CGIGEIVIPE NEP..GSSIM PGKVNPTQSE A...LTMIAA QIMG
ASPA_BACSU/16-345 AGLAEISLPA RQP..GSSIM PGKVNPVMAE L...INQIAF QVIG
ASPA_PSEFL/19-351 TGINEINLPA RQP..GSSIM PGKVNPVIPE A...VNQVAF QVIG
ASPA_SHIFL/13-345 AGLNEINLPE LQA..GSSIM PAKVNPVVPE V...VNQVCF KVIG
FUMC_SULSO/1-315 TGLNEIDLPT QEEIAGSSIM PGKTNPVTVE A...TLLISA QVVG
ARLY_ECOLI/6-301 AGFVELSDRV TS...GSSLM PQKKNPDALE L...IRGKCG RVQG
ARLY_CHLRE/18-313 FGYVQCSDAY AT...GSSLM PQKKNPDALE L...IRGKGG RVQG
ARLY_HUMAN/11-305 FSFVQLSDAY ST...GSSLM PQKKNPDSLE L...IRSKAG RVFG
ARLY1_ANAPL/11-305 FGFLTLSDAF ST...GSSLM PQKKNPDSLE L...IRSKAG RVFG
ARLY_SCHPO/12-306 FGFVTLSDAY ST...GSSIM PQKKNPDSLE L...LRGKSG RVLG
ARLY_CANAL/17-312 FGFIKLADAY ST...GSSLM PQKKNPDSLE L...LRGKSG RVFG
PUR8_BACSU/3-286 TREVEEFFAK GQK..GSSAM PHKRNPIGSE N...MTGMAR VIRG
PCAB_PSEPU/8-300 AGEVFEPSAP GKG..GSSTM PHKRNPVGAA V...LIGAAT RVPG
PUR8_ECOLI/14-321 LNHFKQKTIA GEI..GSSTM PHKVNPIDFE .NSEGNLGLS NAVL
FUMC1_BRAJA/22-352 SGLGELILPE NEP..GSSIM PGKVNPTQCE A...MTMVCC QVFG
FUMH_YEAST/36-367 CGYHELMLPE NEP..GSSIM PGKVNPTQNE A...LTQVCV QVMG
FUMH_HUMAN/58-389 SGLGELILPE NEP..GSSIM PGKVNPTQCE A...MTMVAA QVMG