Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~Istar/Term4/alig.txt Дата изменения: Tue Mar 14 03:09:25 2006 Дата индексирования: Tue Oct 2 06:27:32 2012 Кодировка:

########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAAA_METJA
# 2: GUAA_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 193
# Identity: 60/193 (31.1%)
# Similarity: 94/193 (48.7%)
# Gaps: 14/193 ( 7.3%)
# Score: 255.0
#
#
#=======================================

GUAAA_METJA 1 VILDNGGQYVHRIHRSLKYIGVSSKI-VPNTTPLEEIESNKEVKGIILSG 49
:|||.|.||...:.|.::.:||..:: ..:.|..:..:.|. .||||||
GUAA_ECOLI 1 LILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNP--SGIILSG 48

GUAAA_METJA 50 GPDI---EKAKNCIDIALNAKLPILGICLGHQLIALAYGGEVGRAEAEEY 96
||:. |.:.........|.:|:.|:|.|.|.:|:..||.|..:...|:
GUAA_ECOLI 49 GPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREF 98

GUAAA_METJA 97 ALTKVYVDKENDLFKNVPREFNA--------WASHKDEVKKVPEGFEILA 138
...:|.|..::.|.:.:.....| |.||.|:|..:|..|..:|
GUAA_ECOLI 99 GYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVA 148

GUAAA_METJA 139 HSDICQVEAMKHKTKPIYGVQFHPEVAHTEYGNEILKNFCKVC 181
.::.|....|.::.|..|||||||||.||..|..:|:.|.:..
GUAA_ECOLI 149 STESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDI 191


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAAA_METJA
# 2: GUAA_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 184
# Identity: 68/184 (37.0%)
# Similarity: 100/184 (54.3%)
# Gaps: 5/184 ( 2.7%)
# Score: 266.5
#
#
#=======================================

GUAAA_METJA 1 VILDNGGQYVHRIHRSLKYIGVSSKIVPNTTPLEEIESNKEVKGIILSGG 50
||||.|.||...|.|.::.:.|.|:|.|..||...|: .:..:.||:|||
GUAA_HUMAN 1 VILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIK-EQGFRAIIISGG 49

GUAAA_METJA 51 PDIEKAKNC--IDIAL-NAKLPILGICLGHQLIALAYGGEVGRAEAEEYA 97
|:...|::. .|.|: ....|:||||.|.|::...:||.|.:....|..
GUAA_HUMAN 50 PNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDG 99

GUAAA_METJA 98 LTKVYVDKENDLFKNVPREFNAWASHKDEVKKVPEGFEILAHSDICQVEA 147
:..:.||....||:.:.:|.....:|.|.|.||.:||:::|.|... |..
GUAA_HUMAN 100 VFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGNI-VAG 148

GUAAA_METJA 148 MKHKTKPIYGVQFHPEVAHTEYGNEILKNFCKVC 181
:.:::|.:||.||||||..||.|..|||||....
GUAA_HUMAN 149 IANESKKLYGAQFHPEVGLTENGKVILKNFLYDI 182


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAA_ECOLI
# 2: GUAA_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 191
# Identity: 73/191 (38.2%)
# Similarity: 103/191 (53.9%)
# Gaps: 9/191 ( 4.7%)
# Score: 313.5
#
#
#=======================================

GUAA_ECOLI 1 LILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGP 50
:|||.|:||.:::.||||||.|..|::..:.....|::.....||:||||
GUAA_HUMAN 1 VILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGP 50

GUAA_ECOLI 51 ESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGY 100
.|...|::|.....:|..|.||.|:|||||.|....||.|...:.||.|.
GUAA_HUMAN 51 NSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGV 100

GUAA_ECOLI 101 AQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVAST 150
..:.|.|..:|.||::.... |.::|||.|..:...|..||.:
GUAA_HUMAN 101 FNISVDNTCSLFRGLQKEEV--------VLLTHGDSVDKVADGFKVVARS 142

GUAA_ECOLI 151 ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDI 191
.:. .|.:|||.|:.||.||||||..|..|..:|:.|:.||
GUAA_HUMAN 143 GNI-VAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDI 182


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAAB_METJA
# 2: GUAA_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 23
# Identity: 15/23 (65.2%)
# Similarity: 18/23 (78.3%)
# Gaps: 0/23 ( 0.0%)
# Score: 73.0
#
#
#=======================================

GUAAB_METJA 1 RKAIIALSGGVDSSVAAVLTHKA 23
.|.|:.|||||||||.|:|.|:|
GUAA_ECOLI 1 DKVILGLSGGVDSSVTAMLLHRA 23


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAAB_METJA
# 2: GUAA_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 35
# Identity: 11/35 (31.4%)
# Similarity: 16/35 (45.7%)
# Gaps: 13/35 (37.1%)
# Score: 58.0
#
#
#=======================================

GUAAB_METJA 1 RKAIIALSGGVDSSVAAVLTHKA------------ 23
|.::.|||||||:|...|.::|
GUAA_HUMAN 1 -KVLVLLSGGVDSTVCTALLNRALNQEQVIAVHID 34


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAA_ECOLI
# 2: GUAA_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 35
# Identity: 14/35 (40.0%)
# Similarity: 18/35 (51.4%)
# Gaps: 13/35 (37.1%)
# Score: 63.0
#
#
#=======================================

GUAA_ECOLI 1 DKVILGLSGGVDSSVTAMLLHRA------------ 23
||::.|||||||:|...||:||
GUAA_HUMAN 1 -KVLVLLSGGVDSTVCTALLNRALNQEQVIAVHID 34


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAAB_METJA
# 2: GUAA_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 93
# Identity: 45/93 (48.4%)
# Similarity: 68/93 (73.1%)
# Gaps: 0/93 ( 0.0%)
# Score: 239.0
#
#
#=======================================

GUAAB_METJA 1 EEEVKKANLDKDLWQYFAVVLDCKATGVKGDEREYNWIVALRMVKSLDAM 50
.||::||:|...:.|.|.|.|..::.||.||.|:|:|:|:||.|:::|.|
GUAA_ECOLI 1 IEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFM 50

GUAAB_METJA 51 TAHVPEIPFDLLKRISKRITSEIPNVARVVFDITDKPPATIEF 93
|||...:|:|.|.|:|.||.:|:..::|||:||:.|||||||:
GUAA_ECOLI 51 TAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW 93


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAAB_METJA
# 2: GUAA_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 203
# Identity: 33/203 (16.3%)
# Similarity: 56/203 (27.6%)
# Gaps: 112/203 (55.2%)
# Score: 79.0
#
#
#=======================================

GUAAB_METJA 1 EEEVKKANLDKDLWQYFAVVLDCKATGVKGDEREYNWI------------ 38
||:.:|......|....|.:|..|..||:||.|.|:::
GUAA_HUMAN 1 EEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWE 50

GUAAB_METJA 39 -------------------------------------------------- 38

GUAA_HUMAN 51 SLIFLARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPTFLTTGVLSTLRQA 100

GUAAB_METJA 39 -------------------------------------------VALRMVK 45
|.:|...
GUAA_HUMAN 101 DFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFI 150

GUAAB_METJA 46 SLDAMTAHVP-----EIPFDLLKRISKRITSEIPNVARVVFDITDKPPAT 90
:.|.||. :| |||.:::.::...| .:||.::|:::|:|.|||.|
GUAA_HUMAN 151 TSDFMTG-IPATPGNEIPVEVVLKMVTEI-KKIPGISRIMYDLTSKPPGT 198

GUAAB_METJA 91 IEF 93
.|:
GUAA_HUMAN 199 TEW 201


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Tue Mar 14 2006 03:08:04
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: GUAA_ECOLI
# 2: GUAA_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 215
# Identity: 32/215 (14.9%)
# Similarity: 49/215 (22.8%)
# Gaps: 136/215 (63.3%)
# Score: 98.0
#
#
#=======================================

GUAA_ECOLI 1 -------------------------------------------------- 0

GUAA_HUMAN 1 EEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWE 50

GUAA_ECOLI 1 -------------------------------------------IEELRKA 7
:..||:|
GUAA_HUMAN 51 SLIFLARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPTFLTTGVLSTLRQA 100

GUAA_ECOLI 8 DL-----------YDKVSQAFTVFLPV--------------RSVGVMGDG 32
|. ..|:||...:..|: ||
GUAA_HUMAN 101 DFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRS------- 143

GUAA_ECOLI 33 RKYDWVVSLRAVETIDFMTAHWA----HLPYDFLGRVSNRIINEVNGISR 78
|.:|...|.||||...| .:|.:.:.::... |.::.||||
GUAA_HUMAN 144 ------VVIRTFITSDFMTGIPATPGNEIPVEVVLKMVTE-IKKIPGISR 186

GUAA_ECOLI 79 VVYDISGKPPATIEW 93
::||::.|||.|.||
GUAA_HUMAN 187 IMYDLTSKPPGTTEW 201


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