Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~Kamina/Term4/result.ehmmasearch Дата изменения: Mon May 22 16:52:22 2006 Дата индексирования: Tue Oct 2 13:16:01 2012 Кодировка:

Query HMM: forprofile||
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
LOLB_PSEAE Outer-membrane lipoprotein lolB precursor. 124.8 1.6e-33 1
LOLB_VIBVY Outer-membrane lipoprotein lolB precursor. 124.7 1.7e-33 1
LOLB_VIBCH Outer-membrane lipoprotein lolB precursor. 124.4 2.1e-33 1
LOLB_VIBPA Outer-membrane lipoprotein lolB precursor. 124.3 2.3e-33 1
LOLB_NITEU Outer-membrane lipoprotein lolB precursor. 120.8 2.6e-32 1
LOLB_VIBVU Outer-membrane lipoprotein lolB precursor. 120.2 3.8e-32 1
LOLB_COXBU Outer-membrane lipoprotein lolB precursor. 119.5 6.2e-32 1
LOLB_HAEIN Outer-membrane lipoprotein lolB precursor. 119.3 7.4e-32 1
LOLB_ECO57 Outer-membrane lipoprotein lolB precursor. 119.2 7.5e-32 1
LOLB_ECOLI Outer-membrane lipoprotein lolB precursor. 119.2 7.5e-32 1
LOLB_SHIFL Outer-membrane lipoprotein lolB precursor. 119.2 7.5e-32 1
LOLB_YERPE Outer-membrane lipoprotein lolB precursor. 118.7 1.1e-31 1
LOLB_SALTI Outer-membrane lipoprotein lolB precursor. 118.3 1.4e-31 1
LOLB_SALTY Outer-membrane lipoprotein lolB precursor. 118.3 1.4e-31 1
LOLB_ECOL6 Outer-membrane lipoprotein lolB precursor. 118.3 1.5e-31 1
LOLB_NEIMA Outer-membrane lipoprotein lolB precursor. 116.5 5e-31 1
LOLB_NEIMB Outer-membrane lipoprotein lolB precursor. 115.8 8e-31 1
LOLB_PSESM Outer-membrane lipoprotein lolB precursor. 114.7 1.7e-30 1
LOLB_PSEPK Outer-membrane lipoprotein lolB precursor. 113.5 4.1e-30 1
LOLB_ACTAC Outer-membrane lipoprotein lolB precursor. 112.9 6.1e-30 1
LOLB_PASMU Outer-membrane lipoprotein lolB precursor. 111.0 2.3e-29 1
LOLB_HAEDU Outer-membrane lipoprotein lolB precursor. 110.5 3.3e-29 1
LOLB_CHRVO Outer-membrane lipoprotein lolB precursor. 110.2 3.8e-29 1
LOLB_SHEON Outer-membrane lipoprotein lolB precursor. 106.5 5.1e-28 1
LOLB_PHOLL Outer-membrane lipoprotein lolB precursor. 103.5 4e-27 1
LOLB_RALSO Outer-membrane lipoprotein lolB precursor. 102.8 6.9e-27 1
LOLB_XANCP Outer-membrane lipoprotein lolB precursor. 98.1 1.8e-25 1
LOLB_XYLFT Outer-membrane lipoprotein lolB precursor. 96.6 5e-25 1
LOLB_XYLFA Outer-membrane lipoprotein lolB precursor. 90.7 2.8e-23 1
LOLB_XANAC Outer-membrane lipoprotein lolB precursor. 89.8 5.6e-23 1
LOLB_BORBR Outer-membrane lipoprotein lolB precursor. 55.9 9e-13 1
LOLB_BORPA Outer-membrane lipoprotein lolB precursor. 55.9 9e-13 1
LOLB_BORPE Outer-membrane lipoprotein lolB precursor. 55.9 9e-13 1
YLIC_ECOLI Inner membrane ABC transporter permease pr 13.0 0.2 1
AMPA_MYCLE Probable cytosol aminopeptidase (EC 3.4.11 11.3 0.58 1
HLDE_SALTI Bifunctional protein hldE [Includes: D-bet 10.7 0.85 1
HLDE_SALTY Bifunctional protein hldE [Includes: D-bet 10.7 0.85 1
HLDE_ECO57 Bifunctional protein hldE [Includes: D-bet 8.0 4.2 1
HLDE_ECOL6 Bifunctional protein hldE [Includes: D-bet 8.0 4.2 1
HLDE_ECOLI Bifunctional protein hldE [Includes: D-bet 8.0 4.2 1
HLDE_SHIFL Bifunctional protein hldE [Includes: D-bet 8.0 4.2 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LOLB_PSEAE 1/1 49 134 .. 1 86 [] 124.8 1.6e-33
LOLB_VIBVY 1/1 44 129 .. 1 86 [] 124.7 1.7e-33
LOLB_VIBCH 1/1 46 131 .. 1 86 [] 124.4 2.1e-33
LOLB_VIBPA 1/1 44 129 .. 1 86 [] 124.3 2.3e-33
LOLB_NITEU 1/1 46 131 .. 1 86 [] 120.8 2.6e-32
LOLB_VIBVU 1/1 44 129 .. 1 86 [] 120.2 3.8e-32
LOLB_COXBU 1/1 61 146 .. 1 86 [] 119.5 6.2e-32
LOLB_HAEIN 1/1 55 140 .. 1 86 [] 119.3 7.4e-32
LOLB_ECO57 1/1 52 137 .. 1 86 [] 119.2 7.5e-32
LOLB_ECOLI 1/1 52 137 .. 1 86 [] 119.2 7.5e-32
LOLB_SHIFL 1/1 52 137 .. 1 86 [] 119.2 7.5e-32
LOLB_YERPE 1/1 52 137 .. 1 86 [] 118.7 1.1e-31
LOLB_SALTI 1/1 52 137 .. 1 86 [] 118.3 1.4e-31
LOLB_SALTY 1/1 52 137 .. 1 86 [] 118.3 1.4e-31
LOLB_ECOL6 1/1 52 137 .. 1 86 [] 118.3 1.5e-31
LOLB_NEIMA 1/1 36 121 .. 1 86 [] 116.5 5e-31
LOLB_NEIMB 1/1 36 121 .. 1 86 [] 115.8 8e-31
LOLB_PSESM 1/1 49 134 .. 1 86 [] 114.7 1.7e-30
LOLB_PSEPK 1/1 49 134 .. 1 86 [] 113.5 4.1e-30
LOLB_ACTAC 1/1 53 138 .. 1 86 [] 112.9 6.1e-30
LOLB_PASMU 1/1 54 139 .. 1 86 [] 111.0 2.3e-29
LOLB_HAEDU 1/1 55 140 .. 1 86 [] 110.5 3.3e-29
LOLB_CHRVO 1/1 37 121 .. 1 86 [] 110.2 3.8e-29
LOLB_SHEON 1/1 49 134 .. 1 86 [] 106.5 5.1e-28
LOLB_PHOLL 1/1 53 138 .. 1 86 [] 103.5 4e-27
LOLB_RALSO 1/1 49 134 .. 1 86 [] 102.8 6.9e-27
LOLB_XANCP 1/1 60 147 .. 1 86 [] 98.1 1.8e-25
LOLB_XYLFT 1/1 61 146 .. 1 86 [] 96.6 5e-25
LOLB_XYLFA 1/1 61 146 .. 1 86 [] 90.7 2.8e-23
LOLB_XANAC 1/1 59 146 .. 1 86 [] 89.8 5.6e-23
LOLB_BORBR 1/1 50 135 .. 1 86 [] 55.9 9e-13
LOLB_BORPA 1/1 50 135 .. 1 86 [] 55.9 9e-13
LOLB_BORPE 1/1 50 135 .. 1 86 [] 55.9 9e-13
YLIC_ECOLI 1/1 40 67 .. 59 86 .] 13.0 0.2
AMPA_MYCLE 1/1 386 446 .. 24 86 .] 11.3 0.58
HLDE_SALTI 1/1 226 272 .. 40 86 .] 10.7 0.85
HLDE_SALTY 1/1 226 272 .. 40 86 .] 10.7 0.85
HLDE_ECO57 1/1 226 272 .. 40 86 .] 8.0 4.2
HLDE_ECOL6 1/1 226 272 .. 40 86 .] 8.0 4.2
HLDE_ECOLI 1/1 226 272 .. 40 86 .] 8.0 4.2
HLDE_SHIFL 1/1 226 272 .. 40 86 .] 8.0 4.2

Alignments of top-scoring domains:
LOLB_PSEAE: domain 1 of 1, from 49 to 134: score 124.8, E = 1.6e-33
LOLB_VIBVY: domain 1 of 1, from 44 to 129: score 124.7, E = 1.7e-33
LOLB_VIBCH: domain 1 of 1, from 46 to 131: score 124.4, E = 2.1e-33
LOLB_VIBPA: domain 1 of 1, from 44 to 129: score 124.3, E = 2.3e-33
LOLB_NITEU: domain 1 of 1, from 46 to 131: score 120.8, E = 2.6e-32
LOLB_VIBVU: domain 1 of 1, from 44 to 129: score 120.2, E = 3.8e-32
LOLB_COXBU: domain 1 of 1, from 61 to 146: score 119.5, E = 6.2e-32
LOLB_HAEIN: domain 1 of 1, from 55 to 140: score 119.3, E = 7.4e-32
LOLB_ECO57: domain 1 of 1, from 52 to 137: score 119.2, E = 7.5e-32
LOLB_ECOLI: domain 1 of 1, from 52 to 137: score 119.2, E = 7.5e-32
LOLB_SHIFL: domain 1 of 1, from 52 to 137: score 119.2, E = 7.5e-32
LOLB_YERPE: domain 1 of 1, from 52 to 137: score 118.7, E = 1.1e-31
LOLB_SALTI: domain 1 of 1, from 52 to 137: score 118.3, E = 1.4e-31
LOLB_SALTY: domain 1 of 1, from 52 to 137: score 118.3, E = 1.4e-31
LOLB_ECOL6: domain 1 of 1, from 52 to 137: score 118.3, E = 1.5e-31
LOLB_NEIMA: domain 1 of 1, from 36 to 121: score 116.5, E = 5e-31
LOLB_NEIMB: domain 1 of 1, from 36 to 121: score 115.8, E = 8e-31
LOLB_PSESM: domain 1 of 1, from 49 to 134: score 114.7, E = 1.7e-30
LOLB_PSEPK: domain 1 of 1, from 49 to 134: score 113.5, E = 4.1e-30
LOLB_ACTAC: domain 1 of 1, from 53 to 138: score 112.9, E = 6.1e-30
LOLB_PASMU: domain 1 of 1, from 54 to 139: score 111.0, E = 2.3e-29
LOLB_HAEDU: domain 1 of 1, from 55 to 140: score 110.5, E = 3.3e-29
LOLB_CHRVO: domain 1 of 1, from 37 to 121: score 110.2, E = 3.8e-29
LOLB_SHEON: domain 1 of 1, from 49 to 134: score 106.5, E = 5.1e-28
LOLB_PHOLL: domain 1 of 1, from 53 to 138: score 103.5, E = 4e-27
LOLB_RALSO: domain 1 of 1, from 49 to 134: score 102.8, E = 6.9e-27
LOLB_XANCP: domain 1 of 1, from 60 to 147: score 98.1, E = 1.8e-25
LOLB_XYLFT: domain 1 of 1, from 61 to 146: score 96.6, E = 5e-25
LOLB_XYLFA: domain 1 of 1, from 61 to 146: score 90.7, E = 2.8e-23
LOLB_XANAC: domain 1 of 1, from 59 to 146: score 89.8, E = 5.6e-23
LOLB_BORBR: domain 1 of 1, from 50 to 135: score 55.9, E = 9e-13
LOLB_BORPA: domain 1 of 1, from 50 to 135: score 55.9, E = 9e-13
LOLB_BORPE: domain 1 of 1, from 50 to 135: score 55.9, E = 9e-13
YLIC_ECOLI: domain 1 of 1, from 40 to 67: score 13.0, E = 0.2
AMPA_MYCLE: domain 1 of 1, from 386 to 446: score 11.3, E = 0.58
HLDE_SALTI: domain 1 of 1, from 226 to 272: score 10.7, E = 0.85
HLDE_SALTY: domain 1 of 1, from 226 to 272: score 10.7, E = 0.85
HLDE_ECO57: domain 1 of 1, from 226 to 272: score 8.0, E = 4.2
HLDE_ECOL6: domain 1 of 1, from 226 to 272: score 8.0, E = 4.2
HLDE_ECOLI: domain 1 of 1, from 226 to 272: score 8.0, E = 4.2
HLDE_SHIFL: domain 1 of 1, from 226 to 272: score 8.0, E = 4.2

Histogram of all scores:

Total sequences searched: 96920

Whole sequence top hits:

Domain top hits: