Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~UdavDasha/term4/cr3/marking.msf Дата изменения: Sun Mar 26 20:53:42 2006 Дата индексирования: Tue Oct 2 17:51:51 2012 Кодировка:

GDC ******** GeneDoc Multiple Sequence Alignment Editor ********
GDC 0132a70190000cffffffffffff000000000000000000808080c0c0c0ffff
GDC ff000000000000f43f000000000000f43f000000000000f03f0000000000
GDC 00f03f00A000300000190000cA54696d6573204e657720526f6d616e00A0
GDC 0320002000000000000000000000601444e000245510003535400044b520
GDC 00546595700064c49564d002848414e445f4d4144452c0d0a494e5f4c4f4
GDC f505f484d2c0d0a544d484d4d5f4d4144452c0d0a494e5f4c4f4f505f544
GDC d2c0d0a44415441424153455f4d4144452c0d0a494e5f4c4f4f505f444d2
GDC 93b0d0a00CBAABAAA0000002a000500020001B20AAA000a203a2000203a2
GDC 00000000000000059400000000000000000000c5058000000ffff0000475
GDC 80000ff00ff000041475358000000ffffff0056434147444e53545058000
GDC 0ff00ffff00484b525800ff00000000ff4544580000ff000000ff484b524
GDC 5445800ffffff0000ff48524551444e425a5800ff000000ff005957484b5
GDC 24551444e5354425a580000000000ff00494c56415800ff0000808080465
GDC 9574858000000ff808080494c564341474d4659574854505800ffffff000
GDC 0000c5058000000000000004758000000000000004143475358000000000
GDC 00000564147444e5354505800000000000000484b5258000000000000004
GDC 5445800000000000000484b524544580000000000000048524551444e425
GDC a5800000000000000435957484b524551444e5354425a580000000000000
GDC 0494c56415800000000000000465957485800000000000000494c5643414
GDC 74d46595748545058000000000000000300ffffff00000000ffffff80808
GDC 000000000c0c0c00000ABBBBBBBBBBBBBB00ff00A0006000100010001000
GDC 100010001A0018AA000000000000000000000003A00ff00A000000000080
GDC 5640000000000080514000000000000049400000020000000000001440A0
GDC 000000098b20c41000000001025064100000000189806410000000078b10
GDC b4100AAABB00005374616e646172640046464c4c5353535359592a2a4343
GDC 2a574c4c4c4c5050505048485151525252524949494d545454544e4e4b4b
GDC 5353525256565656414141414444454547474747002d2d2d2d2d2d2d2d2d
GDC 2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d4d2d2d2d
GDC 2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d00BBBBB000
GDC 0000000000006009600000009000000ffffff0000012f00ffff400080000
GDC 0012e00ffff4000800000012d00ffff4000800000012c00ffff400080000
GDC 0012b00ffff4000800000012a00ffff4000800000012900ffff400080000
GDC 0013c00ffff4000800000013b00ffff4000800000013a00ffff400080000
GDC 0013900ffff4000800000013800ffff4000800000013700ffff400080000
GDC 0013600ffff4000800000013500ffff4000800000013400ffff400080000
GDC 0013300ffff4000800000013200ffff4000800000013100ffff400080000
GDC 0013000ffff4000800000003f00ffff4000800000003e00ffff400080000
GDC 0003d00ffff4000800000003c00ffff4000800000003b00ffff400080000
GDC 0004d00ffff4000800000004c00ffff4000800000004b00ffff400080000
GDC 0004a00ffff4000800000004900ffff4000800000004800ffff400080000
GDC 0004700ffff4000800000004600ffff4000800000004500ffff400080000
GDC 0004400ffff4000800000004300ffff4000800000004200ffff400080000
GDC 0004100ffff4000800000004000ffff4000800000005700ffff400080000
GDC 0005f00ffff4000800000005e00ffff4000800000005d00ffff400080000
GDC 0005c00ffff4000800000005b00ffff4000800000005a00ffff400080000
GDC 0005900ffff4000800000005800ffff40008000000053000000ffffff000
GDC 00052000000ffffff00000051000000ffffff00000050000000ffffff000
GDC 0006700ffff4000800000006900ffff4000800000006b000000ffffff000
GDC 0006c000000ffffff0000006e000000ffffff0000006f000000ffffff000
GDC 0006d000000ffffff0000006a00ffff4000800000006800ffff400080000
GDC 0006600ffff4000800000006500ffff4000800000006400ffff400080000
GDC 0006300ffff4000800000006200ffff4000800000006100ffff400080000
GDC 0006000ffff400080000003af00ffff400080000003ae00ffff400080000
GDC 003ad00ffff400080000003ac00ffff400080000003ab00ffff400080000
GDC 003aa00ffff400080000003a900ffff400080000003a800ffff400080000
GDC 003a700ffff400080000003a600ffff400080000003a500ffff400080000
GDC 003a400ffff400080000003a300ffff400080000003a200ffff400080000
GDC 00074000000ffffff00000072000000ffffff00000070000000ffffff000
GDC 0007f000000ffffff0000007e000000ffffff0000007d000000ffffff000
GDC 0007c000000ffffff0000007b000000ffffff0000007a000000ffffff000
GDC 00079000000ffffff00000078000000ffffff00000077000000ffffff000
GDC 00076000000ffffff00000075000000ffffff00000073000000ffffff000
GDC 00071000000ffffff000003b500ffff400080000003b400ffff400080000
GDC 003b300ffff400080000003b200ffff400080000003b100ffff400080000
GDC 003b000ffff4000800000008f000000ffffff0000008e000000ffffff000
GDC 0008d000000ffffff0000008c000000ffffff0000008b000000ffffff000
GDC 0008a000000ffffff00000089000000ffffff00000088000000ffffff000
GDC 00087000000ffffff00000086000000ffffff00000085000000ffffff000
GDC 00084000000ffffff00000083000000ffffff00000082000000ffffff000
GDC 00081000000ffffff00000080000000ffffff00000099000000ffffff000
GDC 00098000000ffffff00000097000000ffffff00000096000000ffffff000
GDC 00095000000ffffff00000094000000ffffff00000093000000ffffff000
GDC 00092000000ffffff00000091000000ffffff00000090000000ffffff000
GDC 0030f00ffff4000800000030e00ffff4000800000030d00ffff400080000
GDC 0030c00ffff4000800000030b00ffff4000800000030a00ffff400080000
GDC 0030900ffff4000800000030800ffff4000800000030700ffff400080000
GDC 0030600ffff4000800000030500ffff4000800000030400ffff400080000
GDC 0030300ffff4000800000031500ffff4000800000031400ffff400080000
GDC 0031300ffff4000800000031200ffff4000800000031100ffff400080000
GDC 0031000ffff400080000800000171000000ffffff00000172000000fffff
GDC f00000173000000ffffff00000174000000ffffff00000175000000fffff
GDC f00000176000000ffffff00000177000000ffffff00000178000000fffff
GDC f00b40000011000ff400080400000011100ff400080400000011200ff400
GDC 080400000011300ff400080400000011400ff400080400000011500ff400
GDC 080400000011600ff400080400000012a00ff400080400000012b00ff400
GDC 080400000012c00ff400080400000012d00ff400080400000012e00ff400
GDC 080400000012f00ff400080400000034100ff400080400000034200ff400
GDC 080400000034300ff400080400000034400ff400080400000034500ff400
GDC 080400000034600ff400080400000034700ff400080400000034800ff400
GDC 080400000034900ff400080400000034a00ff400080400000034b00ff400
GDC 080400000034c00ff400080400000034d00ff400080400000034e00ff400
GDC 080400000034f00ff400080400000013000ff400080400000013100ff400
GDC 080400000013200ff400080400000013300ff400080400000013400ff400
GDC 080400000013500ff400080400000013600ff400080400000013700ff400
GDC 080400000013800ff400080400000013900ff400080400000013a00ff400
GDC 080400000013b00ff400080400000013c00ff400080400000013d00ff400
GDC 080400000013e00ff400080400000013f00ff400080400000035000ff400
GDC 080400000035100ff400080400000035200ff400080400000035300ff400
GDC 080400000035400ff400080400000035500ff400080400000035600ff400
GDC 080400000035700ff400080400000003b00ff400080400000003c00ff400
GDC 080400000003d00ff400080400000003e00ff400080400000003f00ff400
GDC 080400000014000ff400080400000004000ff400080400000004100ff400
GDC 080400000004200ff400080400000004300ff400080400000004400ff400
GDC 080400000004500ff400080400000004600ff400080400000004700ff400
GDC 080400000004800ff400080400000004900ff400080400000004a00ff400
GDC 080400000004b00ff400080400000004c00ff400080400000004d00ff400
GDC 080400000004e00ff400080400000005300ff400080400000005400ff400
GDC 080400000005500ff400080400000005600ff400080400000005700ff400
GDC 080400000005800ff400080400000005900ff400080400000005a00ff400
GDC 080400000005b00ff400080400000005c00ff400080400000005d00ff400
GDC 080400000005e00ff400080400000005f00ff4000804000000167000000f
GDC fffff00000168000000ffffff00000169000000ffffff0000016a000000f
GDC fffff0000016b000000ffffff0000016c000000ffffff0000016d000000f
GDC fffff0000016e000000ffffff0000016f000000ffffff0000006000ff400
GDC 080400000006100ff400080400000006200ff400080400000006300ff400
GDC 080400000006400ff400080400000006500ff400080400000006600ff400
GDC 080400000006700ff400080400000006800ff400080400000006900ff400
GDC 0804000000170000000ffffff00000171000000ffffff00000177000000f
GDC fffff00000176000000ffffff00000175000000ffffff00000174000000f
GDC fffff00000173000000ffffff00000172000000ffffff00000178000000f
GDC fffff00000179000000ffffff0000017a000000ffffff0000017b000000f
GDC fffff0000017c000000ffffff0000017d000000ffffff0000039f00ff400
GDC 08040000003a000ff40008040000003a100ff40008040000003a200ff400
GDC 08040000003a300ff40008040000003a400ff40008040000003a500ff400
GDC 08040000003a600ff40008040000003a700ff40008040000003a800ff400
GDC 08040000003a900ff40008040000003aa00ff40008040000003ab00ff400
GDC 08040000003ac00ff40008040000003ad00ff40008040000003ae00ff400
GDC 08040000003af00ff40008040000003b000ff40008040000003b100ff400
GDC 08040000003b200ff40008040000003b300ff40008040000003b400ff400
GDC 08040000003b500ff40008040000003b6000000ffffff000003b7000000f
GDC fffff000002f700ff40008040000002f800ff40008040000002f900ff400
GDC 08040000002fa00ff40008040000002fb00ff40008040000002fc00ff400
GDC 08040000002fd00ff40008040000002fe00ff40008040000002ff00ff400
GDC 080400000030000ff400080400000030100ff400080400000030200ff400
GDC 080400000030300ff400080400000030400ff400080400000030500ff400
GDC 080400000030600ff400080400000030700ff400080400000030800ff400
GDC 080400000030900ff400080400000030a00ff400080400000030b00ff400
GDC 080400000030c00ff400080400000030d00ff400080400000010300ff400
GDC 080400000010400ff400080400000010500ff400080400000010600ff400
GDC 080400000010700ff400080400000010800ff400080400000010900ff400
GDC 080400000010a00ff400080400000010b00ff400080400000010c00ff400
GDC 080400000010d00ff400080400000010f00ff400080400000010e00ff400
GDC 0804000030000003f000000ffffff00000040000000ffffff0000005a000
GDC 000ffffff00bc0000011fff804080400000000111ff80408040000000011
GDC 0ff80408040000000034fff80408040000000034eff80408040000000034
GDC dff80408040000000034cff80408040000000034bff80408040000000034
GDC aff804080400000000349ff804080400000000348ff80408040000000034
GDC 7ff804080400000000346ff804080400000000345ff80408040000000034
GDC 4ff804080400000000343ff804080400000000342ff80408040000000034
GDC 1ff80408040000000012eff80408040000000012fff80408040000000012
GDC dff80408040000000012cff80408040000000012bff80408040000000012
GDC aff804080400000000129ff804080400000000128ff80408040000000012
GDC 7ff804080400000000126ff804080400000000125ff80408040000000012
GDC 4ff804080400000000123ff804080400000000122ff80408040000000012
GDC 1ff804080400000000120ff804080400000000354ff80408040000000035
GDC 3ff804080400000000352ff804080400000000351ff80408040000000035
GDC 0ff804080400000000131ff804080400000000130ff80408040000000003
GDC fff80408040000000003eff80408040000000003dff80408040000000003
GDC cff80408040000000003bff80408040000000003aff80408040000000003
GDC 9ff804080400000000038ff80408040000000004c000000ffffff0000004
GDC bff80408040000000004aff804080400000000049ff80408040000000004
GDC 8ff804080400000000047ff804080400000000046ff80408040000000004
GDC 5ff804080400000000044ff804080400000000043ff80408040000000004
GDC 2ff804080400000000041ff804080400000000040ff80408040000000038
GDC fff80408040000000038eff80408040000000038dff80408040000000038
GDC cff80408040000000038bff80408040000000038aff80408040000000038
GDC 9ff804080400000000388ff804080400000000387ff80408040000000038
GDC 6ff804080400000000385ff804080400000000384ff80408040000000038
GDC 3ff804080400000000382ff804080400000000381ff80408040000000038
GDC 0ff80408040000000005fff80408040000000005eff80408040000000005
GDC dff80408040000000005cff80408040000000005bff80408040000000005
GDC aff804080400000000059ff804080400000000392ff80408040000000039
GDC 1ff804080400000000390ff804080400000000068ff80408040000000006
GDC 7ff804080400000000066ff804080400000000065ff80408040000000006
GDC 4ff804080400000000063ff804080400000000062ff80408040000000006
GDC 1ff804080400000000060ff8040804000000003afff8040804000000003a
GDC eff8040804000000003adff8040804000000003acff8040804000000003a
GDC bff8040804000000003aaff8040804000000003a9ff8040804000000003a
GDC 8ff8040804000000003a7ff8040804000000003a6ff8040804000000003a
GDC 5ff8040804000000003a4ff8040804000000003a3ff8040804000000003b
GDC 4ff8040804000000003b3ff8040804000000003b2ff8040804000000003b
GDC 1ff8040804000000003b0ff8040804000000003cfff8040804000000003c
GDC eff8040804000000003cdff8040804000000003ccff8040804000000003c
GDC bff8040804000000003caff8040804000000003c9ff8040804000000003c
GDC 8ff8040804000000003c7ff8040804000000003c6ff8040804000000003c
GDC 5ff8040804000000003daff8040804000000003d9ff8040804000000003d
GDC 8ff8040804000000003d7ff8040804000000003d6ff8040804000000003d
GDC 5ff8040804000000003d4ff8040804000000003d3ff8040804000000003d
GDC 2ff8040804000000003d1ff8040804000000003d0ff8040804000000002f
GDC fff8040804000000002feff8040804000000002fdff8040804000000002f
GDC cff8040804000000002fbff8040804000000002faff8040804000000002f
GDC 9ff80408040000000030bff80408040000000030aff80408040000000030
GDC 9ff804080400000000308ff804080400000000307ff80408040000000030
GDC 6ff804080400000000305ff804080400000000304ff80408040000000030
GDC 3ff804080400000000302ff804080400000000301ff80408040000000030
GDC 0ff80408040000000031eff80408040000000031fff80408040000000031
GDC dff80408040000000031cff80408040000000031bff80408040000000031
GDC aff804080400000000319ff804080400000000318ff80408040000000031
GDC 7ff804080400000000316ff804080400000000315ff80408040000000031
GDC 4ff804080400000000326ff804080400000000325ff80408040000000032
GDC 4ff804080400000000323ff804080400000000322ff80408040000000032
GDC 1ff804080400000000320ff80408040000000010fff80408040000000010
GDC eff80408040000000010dff80408040000000010cff80408040000000010
GDC bff80408040000000010aff804080400000000109ff80408040000000010
GDC 8ff804080400000000107ff804080400000000106ff80408040000000010
GDC 5ff804080400000000104ff804080400000000103ff80408040000002000
GDC 0005c000000ffffff0000005b000000ffffff0003000000000000BBAB000
GDC 641543241315f5241424954202d2070726163746963616c6c792068616e6
GDC 46c79206d61646520726573756c7400496e6e6572206c6f6f70732028776
GDC 9746820222b222920696e2048616e646c79204d616465205072656469637
GDC 4696f6e00526573756c74206f6620544d484d4d2070726564696374696f6
GDC e00496e73696465206c6f6f707320627920544d484d4d207072656469637
GDC 4696f6e2061726520706f696e74657220776974682022706c75732200496
GDC e666f726d6174696f6e2061626f757420544d2d706172747320696e20746
GDC 865204f504d20646174616261736500496e6e6572206c6f6f70732070726
GDC 5646963746564207573696e6720646174612066726f6d204f504d2064617
GDC 46162617365000201b7B0000000000005940000000000000544000000000
GDC 00004e4000AAAB000000ffffff0302014445484b524e5153540000ff00ff
GDC 0000024c49564d4659574147435000ff000000ff0004014445484b520000
GDC ff00ff0000024e5153540000ff00ff8000034c49564d46595700ff000000
GDC ff0004414700ff0000008000080144450000ff00ff000002484b5200ffff
GDC ffff0000034e510000ff00ff800004535400ffffffff8000054c495600ff
GDC 000000ff000646595700ffffff00ff0007414700ff0000008000084d4300
GDC ffffff0080000000000000Affffff80808000A
marking.msf MSF: 1001 Type: P March 26, 2006 20:53 Check: 9776 ..

Name: HAND_MADE Len: 1001 Check: 35 Weight: 1.00
Name: IN_LOOP_HM Len: 1001 Check: 6749 Weight: 1.00
Name: TMHMM_MADE Len: 1001 Check: 35 Weight: 1.00
Name: IN_LOOP_TM Len: 1001 Check: 741 Weight: 1.00
Name: DATABASE_MADE Len: 1001 Check: 35 Weight: 1.00
Name: IN_LOOP_DM Len: 1001 Check: 2181 Weight: 1.00

//

1 50
HAND_MADE MEAAHSKSTE ECLAYFGVSE TTGLTPDQVK RHLEKYGHNE LPAEEGKSLW
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE MEAAHSKSTE ECLAYFGVSE TTGLTPDQVK RHLEKYGHNE LPAEEGKSLW
IN_LOOP_TM .......... .......... .......... .......... ..........
DATABASE_MADE MEAAHSKSTE ECLAYFGVSE TTGLTPDQVK RHLEKYGHNE LPAEEGKSLW
IN_LOOP_DM .......... .......... .......... .......... ..........

51 100
HAND_MADE ELVIEQFEDL LVRILLLAAC ISFVLAWFEE GEETITAFVE PFVILLILIA
IN_LOOP_HM .......... .......... ........++ +++++++... ..........
TMHMM_MADE ELVIEQFEDL LVRILLLAAC ISFVLAWFEE GEETITAFVE PFVILLILIA
IN_LOOP_TM .......... .......... .......... .......... ..........
DATABASE_MADE ELVIEQFEDL LVRILLLAAC ISFVLAWFEE GEETITAFVE PFVILLILIA
IN_LOOP_DM .......... .......... .......... .......... ..........

101 150
HAND_MADE NAIVGVWQER NAENAIEALK EYEPEMGKVY RADRKSVQRI KARDIVPGDI
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE NAIVGVWQER NAENAIEALK EYEPEMGKVY RADRKSVQRI KARDIVPGDI
IN_LOOP_TM ......++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE NAIVGVWQER NAENAIEALK EYEPEMGKVY RADRKSVQRI KARDIVPGDI
IN_LOOP_DM .....+++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

151 200
HAND_MADE VEVAVGDKVP ADIRILSIKS TTLRVDQSIL TGESVSVIKH TEPVPDPRAV
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE VEVAVGDKVP ADIRILSIKS TTLRVDQSIL TGESVSVIKH TEPVPDPRAV
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE VEVAVGDKVP ADIRILSIKS TTLRVDQSIL TGESVSVIKH TEPVPDPRAV
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

201 250
HAND_MADE NQDKKNMLFS GTNIAAGKAL GIVATTGVST EIGKIRDQMA ATEQDKTPLQ
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE NQDKKNMLFS GTNIAAGKAL GIVATTGVST EIGKIRDQMA ATEQDKTPLQ
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE NQDKKNMLFS GTNIAAGKAL GIVATTGVST EIGKIRDQMA ATEQDKTPLQ
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

251 300
HAND_MADE QKLDEFGEQL SKVISLICVA VWLINIGHFN DPVHGGSWIR GAIYYFKIAV
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE QKLDEFGEQL SKVISLICVA VWLINIGHFN DPVHGGSWIR GAIYYFKIAV
IN_LOOP_TM +++++++++. .......... .......... .......... ..........
DATABASE_MADE QKLDEFGEQL SKVISLICVA VWLINIGHFN DPVHGGSWIR GAIYYFKIAV
IN_LOOP_DM +++++++++. .......... .......... .......... ..........

301 350
HAND_MADE ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE TLGCTSVICS
IN_LOOP_HM .......... .......+++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE TLGCTSVICS
IN_LOOP_TM .......... .......... .+++++++++ ++++++++++ ++++++++++
DATABASE_MADE ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE TLGCTSVICS
IN_LOOP_DM ......++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

351 400
HAND_MADE DKTGTLTTNQ MSVCKMFIID KVDGDFCSLN EFSITGSTYA PEGEVLKNDK
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE DKTGTLTTNQ MSVCKMFIID KVDGDFCSLN EFSITGSTYA PEGEVLKNDK
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE DKTGTLTTNQ MSVCKMFIID KVDGDFCSLN EFSITGSTYA PEGEVLKNDK
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

401 450
HAND_MADE PIRSGQFDGL VELATICALC NDSSLDFNET KGVYEKVGEA TETALTTLVE
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE PIRSGQFDGL VELATICALC NDSSLDFNET KGVYEKVGEA TETALTTLVE
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE PIRSGQFDGL VELATICALC NDSSLDFNET KGVYEKVGEA TETALTTLVE
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

451 500
HAND_MADE KMNVFNTEVR NLSKVERANA CNSVIRQLMK KEFTLEFSRD RKSMSVYCSP
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE KMNVFNTEVR NLSKVERANA CNSVIRQLMK KEFTLEFSRD RKSMSVYCSP
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE KMNVFNTEVR NLSKVERANA CNSVIRQLMK KEFTLEFSRD RKSMSVYCSP
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

501 550
HAND_MADE AKSSRAAVGN KMFVKGAPEG VIDRCNYVRV GTTRVPMTGP VKEKILSVIK
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE AKSSRAAVGN KMFVKGAPEG VIDRCNYVRV GTTRVPMTGP VKEKILSVIK
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE AKSSRAAVGN KMFVKGAPEG VIDRCNYVRV GTTRVPMTGP VKEKILSVIK
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

551 600
HAND_MADE EWGTGRDTLR CLALATRDTP PKREEMVLDD SSRFMEYETD LTFVGVVGML
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE EWGTGRDTLR CLALATRDTP PKREEMVLDD SSRFMEYETD LTFVGVVGML
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE EWGTGRDTLR CLALATRDTP PKREEMVLDD SSRFMEYETD LTFVGVVGML
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

601 650
HAND_MADE DPPRKEVMGS IQLCRDAGIR VIMITGDNKG TAIAICRRIG IFGENEEVAD
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE DPPRKEVMGS IQLCRDAGIR VIMITGDNKG TAIAICRRIG IFGENEEVAD
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE DPPRKEVMGS IQLCRDAGIR VIMITGDNKG TAIAICRRIG IFGENEEVAD
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

651 700
HAND_MADE RAYTGREFDD LPLAEQREAC RRACCFARVE PSHKSKIVEY LQSYDEITAM
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE RAYTGREFDD LPLAEQREAC RRACCFARVE PSHKSKIVEY LQSYDEITAM
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE RAYTGREFDD LPLAEQREAC RRACCFARVE PSHKSKIVEY LQSYDEITAM
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

701 750
HAND_MADE TGDGVNDAPA LKKAEIGIAM GSGTAVAKTA SEMVLADDNF STIVAAVEEG
IN_LOOP_HM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
TMHMM_MADE TGDGVNDAPA LKKAEIGIAM GSGTAVAKTA SEMVLADDNF STIVAAVEEG
IN_LOOP_TM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE TGDGVNDAPA LKKAEIGIAM GSGTAVAKTA SEMVLADDNF STIVAAVEEG
IN_LOOP_DM ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++

751 800
HAND_MADE RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV QLLWVNLVTD
IN_LOOP_HM ++++++++++ ++++++++++ +......... .......... ..........
TMHMM_MADE RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV QLLWVNLVTD
IN_LOOP_TM +++++++++. .......... .......... .......... ..........
DATABASE_MADE RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV QLLWVNLVTD
IN_LOOP_DM ++++++++++ +......... .......... .......... ..........

801 850
HAND_MADE GLPATALGFN PPDLDIMDRP PRSPKEPLIS GWLFFRYMAI GGYVGAATVG
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE GLPATALGFN PPDLDIMDRP PRSPKEPLIS GWLFFRYMAI GGYVGAATVG
IN_LOOP_TM .......... .......... .......... .......... ..........
DATABASE_MADE GLPATALGFN PPDLDIMDRP PRSPKEPLIS GWLFFRYMAI GGYVGAATVG
IN_LOOP_DM .......+++ ++++++++++ ++++++++++ +++....... ..........

851 900
HAND_MADE AAAWWFMYAE DGPGVTYHQL THFMQCTEDH PHFEGLDCEI FEAPEPMTMA
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE AAAWWFMYAE DGPGVTYHQL THFMQCTEDH PHFEGLDCEI FEAPEPMTMA
IN_LOOP_TM ......++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++
DATABASE_MADE AAAWWFMYAE DGPGVTYHQL THFMQCTEDH PHFEGLDCEI FEAPEPMTMA
IN_LOOP_DM .......... .......... .......... .......... ..........

901 950
HAND_MADE LSVLVTIEMC NALNSLSENQ SLMRMPPWVN IWLLGSICLS MSLHFLILYV
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE LSVLVTIEMC NALNSLSENQ SLMRMPPWVN IWLLGSICLS MSLHFLILYV
IN_LOOP_TM ++++++++++ ++++++++++ +++++++... .......... ..........
DATABASE_MADE LSVLVTIEMC NALNSLSENQ SLMRMPPWVN IWLLGSICLS MSLHFLILYV
IN_LOOP_DM .......... .....+++++ ++++++++++ +......... ..........

951 1000
HAND_MADE DPLPMIFKLK ALDLTQWLMV LKISLPVIGL DEILKFIARN YLEDPEDERR
IN_LOOP_HM .......... .......... .......... .......... ..........
TMHMM_MADE DPLPMIFKLK ALDLTQWLMV LKISLPVIGL DEILKFIARN YLEDPEDERR
IN_LOOP_TM .......... .......... .......... .......... ..........
DATABASE_MADE DPLPMIFKLK ALDLTQWLMV LKISLPVIGL DEILKFIARN YLEDPEDERR
IN_LOOP_DM .......... .......... .......... .......... ..........

1001 1001
HAND_MADE K
IN_LOOP_HM .
TMHMM_MADE K
IN_LOOP_TM .
DATABASE_MADE K
IN_LOOP_DM .