Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~golikov_v/practices/aj223173.out Дата изменения: Sun Nov 22 18:10:56 2009 Дата индексирования: Tue Oct 2 14:01:06 2012 Кодировка:

BLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= AJ223173 AJ223173.1 Escherichia coli Maltose Transacetylase orf
(maa)
(552 letters)

Database: index
204 sequences; 2,269,587 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE006074 Pasteurella multocida subsp. multocida str. Pm70 sectio... 34 0.062
AE006220 Pasteurella multocida subsp. multocida str. Pm70 sectio... 32 0.24
AE006094 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 0.97
AE006063 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 0.97
AE006054 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 0.97
AE006048 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 0.97
AE006204 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006180 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006168 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006147 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006110 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006103 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006096 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006078 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006064 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8
AE006047 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 3.8

>AE006074 Pasteurella multocida subsp. multocida str. Pm70 section 41
of 204 of the complete genome.
Length = 13083

Score = 34.2 bits (17), Expect = 0.062
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 531 cagaataattaaaaaat 547
|||||||||||||||||
Sbjct: 5990 cagaataattaaaaaat 5974


>AE006220 Pasteurella multocida subsp. multocida str. Pm70 section 187
of 204 of the complete genome.
Length = 13709

Score = 32.2 bits (16), Expect = 0.24
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 234 taattttttcgccaac 249
||||||||||||||||
Sbjct: 11988 taattttttcgccaac 11973


>AE006094 Pasteurella multocida subsp. multocida str. Pm70 section 61
of 204 of the complete genome.
Length = 11956

Score = 30.2 bits (15), Expect = 0.97
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 231 taataattttttcgc 245
|||||||||||||||
Sbjct: 9458 taataattttttcgc 9444


>AE006063 Pasteurella multocida subsp. multocida str. Pm70 section 30
of 204 of the complete genome.
Length = 10124

Score = 30.2 bits (15), Expect = 0.97
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 238 tttttcgccaacttc 252
|||||||||||||||
Sbjct: 4545 tttttcgccaacttc 4531


>AE006054 Pasteurella multocida subsp. multocida str. Pm70 section 21
of 204 of the complete genome.
Length = 11152

Score = 30.2 bits (15), Expect = 0.97
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 6 cacagaaaaagaaaa 20
|||||||||||||||
Sbjct: 7608 cacagaaaaagaaaa 7594


>AE006048 Pasteurella multocida subsp. multocida str. Pm70 section 15
of 204 of the complete genome.
Length = 12232

Score = 30.2 bits (15), Expect = 0.97
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 523 aatccagccagaata 537
|||||||||||||||
Sbjct: 6986 aatccagccagaata 6972


>AE006204 Pasteurella multocida subsp. multocida str. Pm70 section 171
of 204 of the complete genome.
Length = 13594

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 235 aattttttcgccaa 248
||||||||||||||
Sbjct: 2527 aattttttcgccaa 2514


>AE006180 Pasteurella multocida subsp. multocida str. Pm70 section 147
of 204 of the complete genome.
Length = 10287

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 214 tataacatttttct 227
||||||||||||||
Sbjct: 1724 tataacatttttct 1711


>AE006168 Pasteurella multocida subsp. multocida str. Pm70 section 135
of 204 of the complete genome.
Length = 11367

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 320 atatctacacggca 333
||||||||||||||
Sbjct: 11260 atatctacacggca 11273


>AE006147 Pasteurella multocida subsp. multocida str. Pm70 section 114
of 204 of the complete genome.
Length = 14766

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 23 tgattgctggtgag 36
||||||||||||||
Sbjct: 3830 tgattgctggtgag 3843


>AE006110 Pasteurella multocida subsp. multocida str. Pm70 section 77
of 204 of the complete genome.
Length = 10184

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 534 aataattaaaaaat 547
||||||||||||||
Sbjct: 7123 aataattaaaaaat 7110


>AE006103 Pasteurella multocida subsp. multocida str. Pm70 section
70 of 204 of the complete genome.
Length = 10736

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 377 tggggaaacccgtc 390
||||||||||||||
Sbjct: 131 tggggaaacccgtc 118



Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 232 aataattttttcgc 245
||||||||||||||
Sbjct: 5915 aataattttttcgc 5928


>AE006096 Pasteurella multocida subsp. multocida str. Pm70 section 63
of 204 of the complete genome.
Length = 10591

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 5 gcacagaaaaagaa 18
||||||||||||||
Sbjct: 1251 gcacagaaaaagaa 1264


>AE006078 Pasteurella multocida subsp. multocida str. Pm70 section 45
of 204 of the complete genome.
Length = 9809

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 233 ataattttttcgcc 246
||||||||||||||
Sbjct: 1117 ataattttttcgcc 1104


>AE006064 Pasteurella multocida subsp. multocida str. Pm70 section 31
of 204 of the complete genome.
Length = 10727

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 215 ataacatttttctc 228
||||||||||||||
Sbjct: 1328 ataacatttttctc 1315


>AE006047 Pasteurella multocida subsp. multocida str. Pm70 section
14 of 204 of the complete genome.
Length = 13792

Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 9 agaaaaagaaaaga 22
||||||||||||||
Sbjct: 512 agaaaaagaaaaga 525


Database: index
Posted date: Nov 22, 2009 4:18 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 204
Number of Hits to DB: 13,311
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 552
Length of database: 2,269,587
Length adjustment: 15
Effective length of query: 537
Effective length of database: 2,266,527
Effective search space: 1217124999
Effective search space used: 1217124999
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 14 (28.2 bits)
S2: 14 (28.2 bits)