Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~igogo/Term3/pa_asp_t.txt Дата изменения: Tue Oct 3 00:02:32 2006 Дата индексирования: Tue Oct 2 08:00:14 2012 Кодировка:

TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= ASPG2_ECOLI
(348 letters)

Database: pa
529 sequences; 6,296,083 total letters

Searching..done

Score E
Sequences producing significant alignments: (bits) Value

embl|AE004563|AE004563 Pseudomonas aeruginosa PAO1, section 124 ... 272 6e-74
embl|AE004651|AE004651 Pseudomonas aeruginosa PAO1, section 212 ... 48 2e-06
embl|AE004484|AE004484 Pseudomonas aeruginosa PAO1, section 45 o... 31 0.31
embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 ... 29 0.91
embl|AE004673|AE004673 Pseudomonas aeruginosa PAO1, section 234 ... 29 1.2
embl|AE004946|AE004946 Pseudomonas aeruginosa PAO1, section 507 ... 27 4.5
embl|AE004954|AE004954 Pseudomonas aeruginosa PAO1, section 515 ... 27 5.9
embl|AE004874|AE004874 Pseudomonas aeruginosa PAO1, section 435 ... 27 5.9

>embl|AE004563|AE004563 Pseudomonas aeruginosa PAO1, section 124 of
529 of the complete genome.
Length = 9937

Score = 272 bits (695), Expect = 6e-74
Identities = 144/311 (46%), Positives = 197/311 (63%), Gaps = 3/311 (0%)
Frame = -3

Query: 41 SATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKIN--TD 98
+A + YT KV V+ L+ +VPQLKDIANV+GEQV I S+ + L L K + D
Sbjct: 4436 AANSATYTAAKVPVDQLLASVPQLKDIANVRGEQVFQIASESFTNENLLELGKTVAKLAD 4257

Query: 99 CDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTA 158
D DG VITHGTDT+EETAYFL L +KP+V+VG+MRP T+MSADG NLYNAV A
Sbjct: 4256 SDDVDGIVITHGTDTLEETAYFLTLVEHTEKPIVVVGSMRPGTAMSADGMLNLYNAVAVA 4077

Query: 159 ADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK 218
DK++ +GVL+ MND +L GRD +K FKS +GPLG + GK + R P ++
Sbjct: 4076 GDKSARGKGVLITMNDEILSGRDASKMVNIKTEAFKS-PWGPLGMVVEGKSYWFRAPVKR 3900

Query: 219 HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDT 278
HT ++ FD+ +++ L V I Y+Y N SD KAL AG I+ AG GNG++ V T
Sbjct: 3899 HTVNSEFDIKQISALAPVEIAYSYGNVSDTAYKALAQAGAKAIIHAGTGNGSVPARVVPT 3720

Query: 279 LATAAKTGTAVVRSSRVPTGA-TTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKD 337
L K G ++RSS V G ++AE D K ++ + LNPQKAR+L +A+T+T+D
Sbjct: 3719 LQELRKQGVQIIRSSHVNAGGFVLRNAEQPDDKNDWIVAHDLNPQKARILAAVAMTKTQD 3540

Query: 338 PQQIQQIFNQY 348
+++Q+IF +Y
Sbjct: 3539 SKELQRIFWEY 3507


>embl|AE004651|AE004651 Pseudomonas aeruginosa PAO1, section 212 of
529 of the complete genome.
Length = 10728

Score = 48.1 bits (113), Expect = 2e-06
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 6/198 (3%)
Frame = +1

Query: 78 IGSQDMNDNVWLTLAKKINTDCDKT-DGFVITHGTDTMEETAYFLD-LTVKCDKPVVMVG 135
+ S +M WL + I D DG ++ HGTDT+ +A L L + PV++ G
Sbjct: 2803 LDSANMTQGNWLAMRDAIVAALDAGHDGVLLLHGTDTLAYSAAALSFLLLDLPIPVLLTG 2982

Query: 136 AMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKS 195
+M P+ + +D NL A+ + + RGV V ND +L G V+K + F
Sbjct: 2983 SMLPAGAPGSDAWDNLVGALRVLQEGHA--RGVQVYFNDALLHGARVSKLRSDAFDAFAE 3156

Query: 196 VNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPK----VGIVYNYANASDLPAK 251
+ P +H P + P+ + ++ Y +
Sbjct: 3157 L------------------PRPRHAEHAPVPAALGYRQPRREVNLAVLPLYPGLRAAHLR 3282

Query: 252 ALVDAGYDGIVSAGVGNG 269
L+D+G + ++ G+G
Sbjct: 3283 GLLDSGVEALLLECYGSG 3336


>embl|AE004484|AE004484 Pseudomonas aeruginosa PAO1, section 45 of 529
of the complete genome.
Length = 11863

Score = 30.8 bits (68), Expect = 0.31
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -1

Query: 262 VSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLN 320
V A VGN N + FD+ G + R S V + TQ +DD +Y S T N
Sbjct: 10990 VKAEVGNYNHKQVSFDSTGPLDDEGRFLYRVSGVVRDSNTQVDHIDDKRYNIAPSLTWN 10814


>embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 of 529
of the complete genome.
Length = 13121

Score = 29.3 bits (64), Expect = 0.91
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -1

Query: 267 GNGNLYKSVFDTLATAAKTGTAVVRSSRVPTG--ATTQDAEV---DDAKYGFVASGTLNP 321
GNG + ++ LAT+ T + R++ T A+T+ A V K G AS T +P
Sbjct: 12095 GNGQFWLPMYSRLATSTPTSSRTSRTTHCSTDSPASTKPARVL*TPGTKRGERASNTSSP 11916

Query: 322 QKARVLL 328
+ R ++
Sbjct: 11915 RVTRTIM 11895


>embl|AE004673|AE004673 Pseudomonas aeruginosa PAO1, section 234 of
529 of the complete genome.
Length = 24397

Score = 28.9 bits (63), Expect = 1.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -3

Query: 251 KALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGA 299
+A DAG+ G V+AGV G + L TA K G + ++++PT A
Sbjct: 8024 QAYEDAGWQGSVTAGVEGGRFAAELVGVL-TAVKGGAQI--TAKLPTAA 7887



Score = 26.9 bits (58), Expect = 4.5
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Frame = -3

Query: 256 AGYDGIVSAGVGNGNLYKSVFDTLATA-----AKTGTAVVRSSRVPTGATTQDAEVDDAK 310
AG +V AG G + TA A G ++R G +D DA
Sbjct: 9116 AGSTAMVQAGTAVGTAAAGWANAAGTAVAMGMASNGAISTINNRGNLGDVVKDVTSSDAL 8937

Query: 311 YGFVASGTLNPQKARVLLQLALTQT 335
G+V +GT A V + TQT
Sbjct: 8936 RGYVVAGTTAGLTAGVYDKWTSTQT 8862


>embl|AE004946|AE004946 Pseudomonas aeruginosa PAO1, section 507 of 529
of the complete genome.
Length = 13075

Score = 26.9 bits (58), Expect = 4.5
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3

Query: 110 GTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVL 169
G +T+++ + L L + V +GA+RP +G VV AD R L
Sbjct: 11004 GLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEG-------VVAGADVVMGRRRSL 11162

Query: 170 VV 171
+V
Sbjct: 11163 LV 11168


>embl|AE004954|AE004954 Pseudomonas aeruginosa PAO1, section 515 of
529 of the complete genome.
Length = 10058

Score = 26.6 bits (57), Expect = 5.9
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1

Query: 253 LVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAK 310
++ GY G V+AGVG G+ +V+ +A A G A S+R+ A +V+ +
Sbjct: 9298 ILPTGYHGAVTAGVGPGS---TVY--IAGAGPVGLAAAASARLLGAAVVIVGDVNPTR 9456


>embl|AE004874|AE004874 Pseudomonas aeruginosa PAO1, section 435 of
529 of the complete genome.
Length = 10602

Score = 26.6 bits (57), Expect = 5.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2

Query: 264 AGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQD 303
AGV S + A AA++G+ VR ++VP +TQD
Sbjct: 6818 AGVPTCTAPHSASNARAWAARSGSGCVRITQVPWANSTQD 6937


Database: pa
Posted date: Oct 2, 2006 11:51 PM
Number of letters in database: 6,296,083
Number of sequences in database: 529

Lambda K H
0.314 0.130 0.366

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,863,263
Number of Sequences: 529
Number of extensions: 22240
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 36
length of query: 348
length of database: 2,098,694
effective HSP length: 90
effective length of query: 258
effective length of database: 2,051,084
effective search space: 529179672
effective search space used: 529179672
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)