Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~igogo/Term4/PF00587_aln.txt Дата изменения: Sun Mar 25 13:59:55 2007 Дата индексирования: Tue Oct 2 11:01:11 2012 Кодировка:

########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
# [-asequence] SYSC_HUMAN_1.fasta
# [-bsequence] SYSM_HUMAN_1.fasta
# -gapopen 10
# -gapextend 0.5
# [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYSM_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 186
# Identity: 50/186 (26.9%)
# Similarity: 90/186 (48.4%)
# Gaps: 12/186 ( 6.5%)
# Score: 230.5
#
#
#=======================================

SYSC_HUMAN 1 FLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFD-EELYKV 49
|:..|:.:....|..||:.|:..|..:|..|.:........: .::|.:
SYSM_HUMAN 1 -LQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI 49

SYSC_HUMAN 50 IGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 99
|...:.:..|..|:|..:|....|..:...|||::....|||
SYSM_HUMAN 50 --------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTC 91

SYSC_HUMAN 100 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEE 149
:|.|..: |::.||::|||.|.|:|.|..:.|...:|.::.||.::...|
SYSM_HUMAN 92 YRAETNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQME 140

SYSC_HUMAN 150 FYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPG- 184
....||:.:.::::.:..|...|.:|.|:|||.||
SYSM_HUMAN 141 ILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGR 176


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
# [-asequence] SYSC_HUMAN_1.fasta
# [-bsequence] SYS_ECOLI_1.fasta
# -gapopen 10
# -gapextend 0.5
# [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYS_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 186
# Identity: 67/186 (36.0%)
# Similarity: 98/186 (52.7%)
# Gaps: 9/186 ( 4.8%)
# Score: 294.5
#
#
#=======================================

SYSC_HUMAN 1 FLEQALIQYALRT-LGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKV 49
:.:||.|:.|.. ....||...|.|:.:.::.:....||.:|..:|:..
SYS_ECOLI 1 -MHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHT 49

SYSC_HUMAN 50 IGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 99
....|::|.::| .||.|:|.|:..|.|.|.:..:|||||....:.|
SYS_ECOLI 50 -RPLEEEADTSNY---ALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPC 95

SYSC_HUMAN 100 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEE 149
||.|.||:||||||:.|:|||:|:|......|.| |....|||...||:
SYS_ECOLI 96 FRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPED--SMAALEEMTGHAEK 143

SYSC_HUMAN 150 FYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPG- 184
..|.||:||..:.:.:|.:...|.|..|||.|.|.
SYS_ECOLI 144 VLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQ 179


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
# [-asequence] SYSC_HUMAN_1.fasta
# [-bsequence] SYS_METJA_1.fasta
# -gapopen 10
# -gapextend 0.5
# [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYS_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 219
# Identity: 44/219 (20.1%)
# Similarity: 76/219 (34.7%)
# Gaps: 67/219 (30.6%)
# Score: 69.5
#
#
#=======================================

SYSC_HUMAN 1 ---FLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELY 47
.||:.:::..::.: |:.....|..:..|:|.::..|....|.:|
SYS_METJA 1 LFRALEELIVEEVVKKI---GFQECLFPKLIPLEIMYKMRYLEGLPEGMY 47

SYSC_HUMAN 48 KV------------------IGK--GSEKSDDNSYDEKYLIATSE-QPIA 76
.| |.| ..||..:...|..|::|.:: :|..
SYS_METJA 48 YVCPPKREPELFKEFVNEMMIKKEIPIEKLKNLLRDPGYVLAPAQCEPFY 97

SYSC_HUMAN 77 ALHRDEWLRPEDLPIKYAGLS-TCFRQEVGSHGRDTRGIFRVHQFEKIEQ 125
.....|.: ..|.||.:...| ..:|.| |...||:.||::|.::|.
SYS_METJA 98 QFFEGEVI-DVDKPIMFFDRSGWTYRWE----GGGARGLDRVNEFLRVEC 142

SYSC_HUMAN 126 FVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKK 175
....|| |..||......::.:.| ::|
SYS_METJA 143 VWIGSP------EFVEETRDKTLKYAEKL------------------AEK 168

SYSC_HUMAN 176 LDLEAWFPG---------- 184
||||.|...
SYS_METJA 169 LDLEYWVEVGDDPFYLEGR 187


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
# [-asequence] SYSM_HUMAN_1.fasta
# [-bsequence] SYS_ECOLI_1.fasta
# -gapopen 10
# -gapextend 0.5
# [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSM_HUMAN
# 2: SYS_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 182
# Identity: 53/182 (29.1%)
# Similarity: 86/182 (47.3%)
# Gaps: 9/182 ( 4.9%)
# Score: 198.0
#
#
#=======================================

SYSM_HUMAN 1 LQHGLVNFTFN-KLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI 49
:...|..|..: ...:.|::...||.|:......|.|..|.. ...:::.
SYS_ECOLI 1 MHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKF-AGDLFHT 49

SYSM_HUMAN 50 DP----ARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAE 95
.| |...:..|..||||.|........:...|||::|...:.|:|:|
SYS_ECOLI 50 RPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSE 99

SYSM_HUMAN 96 TNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTE 144
..: |::.|||.|:|.|.||||..:..| |.|...|||......::|..
SYS_ECOLI 100 AGSYGRDTRGLIRMHQFDKVEMVQIVRP--EDSMAALEEMTGHAEKVLQL 147

SYSM_HUMAN 145 LGLHFRVLDMPTQELGLPAYRKFDIEAWMPGR 176
|||.:|.:.:.|.::|..|.:.:|:|.|:|.:
SYS_ECOLI 148 LGLPYRKIILCTGDMGFGACKTYDLEVWIPAQ 179


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
# [-asequence] SYSM_HUMAN_1.fasta
# [-bsequence] SYS_METJA_1.fasta
# -gapopen 10
# -gapextend 0.5
# [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSM_HUMAN
# 2: SYS_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 228
# Identity: 42/228 (18.4%)
# Similarity: 68/228 (29.8%)
# Gaps: 93/228 (40.8%)
# Score: 53.5
#
#
#=======================================

SYSM_HUMAN 1 LQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQI---- 46
|.|....:.|.::::...|:.| :.|...|.:|
SYS_METJA 1 -------------LFRALEELIVEEVVKKIGFQEC-LFPKLIPLEIMYKM 36

SYSM_HUMAN 47 ----------YNI-----DPARFKDL--NLAGTAEVGL---------AGY 70
|.: :|..||:. .:....|:.: .||
SYS_METJA 37 RYLEGLPEGMYYVCPPKREPELFKEFVNEMMIKKEIPIEKLKNLLRDPGY 86

SYSM_HUMAN 71 ------------FMDHTVAFRDLPVRMV-CSSTCYRAETNTGQEPRGLYR 107
|.:..|...|.|:... .|...||.| |...|||.|
SYS_METJA 87 VLAPAQCEPFYQFFEGEVIDVDKPIMFFDRSGWTYRWE---GGGARGLDR 133

SYSM_HUMAN 108 VHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQ 157
|:.|.:||...:..| :.:||.....::...:|.
SYS_METJA 134 VNEFLRVECVWIGSP------EFVEETRDKTLKYAEKLA----------- 166

SYSM_HUMAN 158 ELGLPAYRKFDIEAW---------MPGR 176
.|.|:|.| :.||
SYS_METJA 167 -------EKLDLEYWVEVGDDPFYLEGR 187


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
# [-asequence] SYS_ECOLI_1.fasta
# [-bsequence] SYS_METJA_1.fasta
# -gapopen 10
# -gapextend 0.5
# [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYS_ECOLI
# 2: SYS_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 216
# Identity: 44/216 (20.4%)
# Similarity: 72/216 (33.3%)
# Gaps: 66/216 (30.6%)
# Score: 112.0
#
#
#=======================================

SYS_ECOLI 1 MHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTR 50
:.|||.:.:::...::.|:.|...|.|:..:.:|....|......:::..
SYS_METJA 1 LFRALEELIVEEVVKKIGFQECLFPKLIPLEIMYKMRYLEGLPEGMYYVC 50

SYS_ECOLI 51 PLEEEAD-------------------------TSNYALIPTAEVPLTNLV 75
|.:.|.: ...|.|.|....|.....
SYS_METJA 51 PPKREPELFKEFVNEMMIKKEIPIEKLKNLLRDPGYVLAPAQCEPFYQFF 100

SYS_ECOLI 76 RGEIIDEDDLPIKMTAHTPCFRSEAGSY---GRDTRGLIRMHQFDKVEMV 122
.||:||.|. ||.. |.....:| |...|||.|:::|.:||.|
SYS_METJA 101 EGEVIDVDK-PIMF------FDRSGWTYRWEGGGARGLDRVNEFLRVECV 143

SYS_ECOLI 123 QIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDL 172
.|..||......::...:|||:.:.| ||
SYS_METJA 144 WIGSPEFVEETRDKTLKYAEKLAEKL----------------------DL 171

SYS_ECOLI 173 EVWIPAQ--------- 179
|.|:...
SYS_METJA 172 EYWVEVGDDPFYLEGR 187


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