Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~is_rusinov/projects/NucleicSeq/yecd.out Дата изменения: Mon Nov 2 20:29:48 2009 Дата индексирования: Tue Nov 24 18:47:45 2009 Кодировка:

TBLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= YECD_ECOLI P0ADI7 RecName: Full=Isochorismatase family protein
yecD; EC=3.-.-.-;
(188 letters)

Database: stg
220 sequences; 4,870,572 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE008785 AE006468 Salmonella typhimurium LT2, section 89 of 220 ... 320 7e-89

>AE008785 AE006468 Salmonella typhimurium LT2, section 89 of 220 of
the complete genome.
Length = 24096

Score = 320 bits (820), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 152/188 (80%), Positives = 168/188 (89%)
Frame = +3

Query: 1 MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSA 60
ML+LNA TTALVVIDLQEGILPFAGGP+TA+EVV RA +LA K RA+G PV +VRVGWS
Sbjct: 195 MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKCRANGSPVVMVRVGWSD 374

Query: 61 DYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRG 120
DYAEALKQPVDA +PA LPENWW P ALG DSD+E+ KRQWGAFYGTDLELQLRRRG
Sbjct: 375 DYAEALKQPVDAATPAHALPENWWTWPTALGKKDSDLEVTKRQWGAFYGTDLELQLRRRG 554

Query: 121 IDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRS 180
IDTI+LCGISTNIGVESTARNAWELGFNL+IAEDACSAAS+EQH +S+ HI+PRI RVRS
Sbjct: 555 IDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAASSEQHQSSMTHIFPRIGRVRS 734

Query: 181 VEEILNAL 188
VE+ILNAL
Sbjct: 735 VEDILNAL 758


Database: stg
Posted date: Nov 2, 2009 8:21 PM
Number of letters in database: 4,870,572
Number of sequences in database: 220

Lambda K H
0.318 0.133 0.401

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 220
Number of Hits to DB: 1,141,072
Number of extensions: 18083
Number of successful extensions: 102
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 1,623,524
Length adjustment: 82
Effective length of query: 106
Effective length of database: 1,605,484
Effective search space: 170181304
Effective search space used: 170181304
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)