Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~kut/term3/files/pmresult.txt Дата изменения: Fri Sep 29 04:07:00 2006 Дата индексирования: Tue Oct 2 17:03:02 2012 Кодировка:

TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= sw|P0A6Z6|NIKR_ECOLI Nickel-responsive regulator.
(133 letters)

Database: pm
204 sequences; 2,269,587 total letters

Searching.done

Score E
Sequences producing significant alignments: (bits) Value

embl|AE006150|AE006150 Pasteurella multocida subsp. multocida st... 27 0.51
embl|AE006192|AE006192 Pasteurella multocida subsp. multocida st... 25 1.1
embl|AE006094|AE006094 Pasteurella multocida subsp. multocida st... 24 2.5
embl|AE006111|AE006111 Pasteurella multocida subsp. multocida st... 23 5.6
embl|AE006095|AE006095 Pasteurella multocida subsp. multocida st... 23 5.6
embl|AE006208|AE006208 Pasteurella multocida subsp. multocida st... 22 9.6
embl|AE006084|AE006084 Pasteurella multocida subsp. multocida st... 22 9.6

>embl|AE006150|AE006150 Pasteurella multocida subsp. multocida str.
Pm70 section 117 of 204 of the complete genome.
Length = 10723

Score = 26.6 bits (57), Expect = 0.51
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3

Query: 76 HHHHDLSVATLHVHINHD 93
HHH L++ATLH + +D
Sbjct: 7956 HHHSKLALATLHAFLRND 8009


>embl|AE006192|AE006192 Pasteurella multocida subsp. multocida str.
Pm70 section 159 of 204 of the complete genome.
Length = 10029

Score = 25.4 bits (54), Expect = 1.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1

Query: 73 STQHHHHDLS 82
S QHHHHDLS
Sbjct: 4209 SMQHHHHDLS 4180


>embl|AE006094|AE006094 Pasteurella multocida subsp. multocida str.
Pm70 section 61 of 204 of the complete genome.
Length = 11956

Score = 24.3 bits (51), Expect = 2.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3

Query: 60 YEHEKRDLASRIVSTQHHHHDLSVATLHVHINH 92
++H+ D+ + ++ HHH LS+ L+ + H
Sbjct: 5447 FQHDG*DVNNLLMLHLVHHHKLSLVVLYHSLQH 5349


>embl|AE006111|AE006111 Pasteurella multocida subsp. multocida str.
Pm70 section 78 of 204 of the complete genome.
Length = 10062

Score = 23.1 bits (48), Expect = 5.6
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -2

Query: 54 AVLSYVYEHEKRDLASRIVSTQH-HHHD 80
+V+ Y+Y H S +H HHHD
Sbjct: 6887 SVIDYLYRHPLEFSPKGFSSCEHVHHHD 6804


>embl|AE006095|AE006095 Pasteurella multocida subsp. multocida str.
Pm70 section 62 of 204 of the complete genome.
Length = 11249

Score = 23.1 bits (48), Expect = 5.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3

Query: 108 VQHFADDVIAQRGVRHGHL 126
+Q DDV+ Q G+ H HL
Sbjct: 921 LQSVTDDVVFQSGLMHVHL 865


>embl|AE006208|AE006208 Pasteurella multocida subsp. multocida str.
Pm70 section 175 of 204 of the complete genome.
Length = 8850

Score = 22.3 bits (46), Expect = 9.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1

Query: 76 HHHHDLSVATLHVHINH 92
HHH L V+ H+H +
Sbjct: 1678 HHHGSLLVSIFHLHTKY 1728


>embl|AE006084|AE006084 Pasteurella multocida subsp. multocida str.
Pm70 section 51 of 204 of the complete genome.
Length = 10499

Score = 22.3 bits (46), Expect = 9.6
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2

Query: 71 IVSTQHHHHDLSVATLHVHINH 92
I S HH L T HINH
Sbjct: 8971 IYSRYHHRDVLQAGTNPFHINH 8906


Database: pm
Posted date: Sep 29, 2006 4:48 AM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
0.322 0.134 0.397

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,874
Number of Sequences: 204
Number of extensions: 5054
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 19
length of query: 133
length of database: 756,529
effective HSP length: 72
effective length of query: 61
effective length of database: 741,841
effective search space: 45252301
effective search space used: 45252301
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)