Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~lohmatikov/Images/root_node3.needle Дата изменения: Sat Dec 17 14:01:50 2005 Дата индексирования: Tue Oct 2 14:44:03 2012 Кодировка:

########################################
# Program: needle
# Rundate: Sat Dec 17 2005 15:01:17
# Align_format: srspair
# Report_file: root_node3.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: root
# 2: node3
# Matrix: EDNAFULL
# Gap_penalty: 100.0
# Extend_penalty: 0.5
#
# Length: 2244
# Identity: 1400/2244 (62.4%)
# Similarity: 1506/2244 (67.1%)
# Gaps: 0/2244 ( 0.0%)
# Score: 4154.0
#
#
#=======================================

root 1 atggcgcgttccaaaactgctcagccaaaacactcactgcgtaaaatcgc 50
|.:|||||.|.|||.|.:||.||||.||:|||||||.|...|.||.|..|
node3 1 AgkgCgCGaTGCAatagkgcacAgcgAAwAcAcTCaGTaaCtgaacTtcc 50

root 51 agttgtagtagccacagcggttagcggcatgtctgtttatgcacaggcag 100
.||.||||.|||..|...|....|.|.||.|...||:|||...||.|||.
node3 51 tGtcGTaGgAGCaGcgCGGaarCGkgaCACGcAsgtwtaTcgTCaygCAC 100

root 101 cggttgaaccgaaagaagacactatcaccgttaccgctgcacctgcgccg 150
..||.|.|:..:.||:|||.|.|||.|||..:.|:|||.||:||||.|||
node3 101 atGTaggaytamtAgmAgaGarTaTaacccgwcCyGcTacasCTgCTccg 150

root 151 caagaaagcgcatgggggcctgctgcaactattgcggcgcgacagtctgc 200
|.||||||.||..||.|||.:.|.|.||..|.|..||||||.|...|..|
node3 151 cCAGaAAgagCkrggagGcGktccgtAAwcaaTCagGCGcggcgaaCGaC 200

root 201 taccggcactaaaaccgatacgccgattcaaaaagtgccacagtctattt 250
|||:|.|.||||.|.||||.:..||||..|.||:.|.||..|.|||....
node3 201 taCsgmccctaataTcGatkytaCgaTAtAtAAraTtccCgaCTCtGAgg 250

root 251 ctgttgtgaccgccgaagagatggcgctgcatcagccgaagtcggtaaaa 300
:|||.||||.||.||||.||:||.|.|.|||||.|||||||.|||..||.
node3 251 mtGTcgtgAGCgtCGAAaaGwtgaccCcGcAtcCgccGaagGCgggcAat 300

root 301 gaagcgcttagctacacgccgggtgtctctgttggtacgcgtggcgcatc 350
|:|.|.|||.|.|||||||..|.|||||.|:||.||:|.|.||.||.|||
node3 301 GrAacCCTTggGTaCAcgcTTgyTgtctrTkTtagtrccCTTGacgAaTc 350

root 351 caacacctatgaccacctgatcattcgcggctttgcggcagaaggccaaa 400
|.|||..|.|...|||.|..||.:||:.|..||:.|.||..:|||:||||
node3 351 cgaCAaTtgtaggcacgtcgtcCytCsagagttkactGcgtmAGgmCaaA 400

root 401 gccagaataactatctgaatggcctgaagttgcagggcaacttctataac 450
|||.|.|.||||.|.|||||||....|.|..:.|...||||||.:.|:.|
node3 401 gcccGtacAacTtTgtgaATGGtaaaACgCCsaaccccAacttgwcTwcc 450

root 451 gatgcggtcattgacccgtatatgctggaacgcgctgaaattatgcgtgg 500
||..|.|||||||...|.|||.||.||||.|....||.|.|:.||.....
node3 451 gActCmgTCATTGgggCttatctgtTggAgcCgagTgtagtkgtGgCcyT 500

root 501 cccggtttccgtgctttacggtaaaagcagtcctggcggcctgttgaata 550
|.||:|||..:||.||..|:||||.||||||...|||....|.|||||.|
node3 501 CacGrTTTgasTgaTTgccrgTaAtagcagtAtGggCcagATtttgAACa 550

root 551 tggtcagcaagcgtccgaccaccgaaccgctgaaagaagttcagtttaaa 600
||..|||||||...||:||||.:..|||....|||:.||.||.|||.|:.
node3 551 tgcsCaGcaaGTcCccsAcCaasagaCcCkCcAAakgagatCggTTAawt 600

root 601 gccggtactgacagcctgttccagactggttttgactttagcgattcgtt 650
||||||.||||.|.|||.|||.|||:|.|.|...:||.||...|.|||||
node3 601 GccGGtccTGawAtccTwTtCaAGAyttGgTccCrCtcTAatcaatcGtT 650

root 651 ggatgatgacggtgtttactcttatcgcctgaccggtcttgcgcgttctg 700
.||||.||..|||||.||..|.||...||||||.||.||||||..|..||
node3 651 TgatGtTggtGgTgTcTatAcCTAagAccTGAcgGGCCttgcgtTtgtTg 700

root 701 ccaatgcccagcagaaagggtcagaagagcagcgttatgctattgcaccg 750
|.|||:..||.|||.||||.||||.|||.|.:|:.|.|||...|.|||||
node3 701 cgAAtkkgCAccaGCAagGtTcaGcaGayCtrcsgTkTGcAggtccAcCg 750

root 751 gcgttcacctggcgtccggatgataaaaccaattttaccttcctttctta 800
:|||||||||..|.|||.|.||.|.||.||||||.|.|||.||:.|.||.
node3 751 rCGtTCacCtctcttcCtggtggtCAAcCcAAtTgTgCCTGcckgTaTTk 800

root 801 cttccagaacgagccggaaaccggttattacggctggttgccgaaagagg 850
..|...||||||||||||.||.|..|.|.||.|..|||||.|||||||||
node3 801 ggtgakgAAcGaGCCggagACtgcgTgtaAccGgsgGttgAcGaAaGAGG 850

root 851 gaaccgttgagccgctgccgaacggtaagcgtctgccgacagactttaat 900
.||||...|.||.||||.:..|.|||||||.|.|.||||||...||||||
node3 851 yAacCcgAgcGCTgCTGascgaaGGtAAgcctktcCCgacacggtttaat 900

root 901 gaaggggcgaagaacaacacctattctcgtaatgagaagatggtcggcta 950
|.|||||..|.|||||||||..:.||..:..|:|.|||.|.||.|.|.|.
node3 901 GcAgGgGgaAgGAAcAacAckcwgTCAgkCcawGcgAatagggrCtGttC 950

root 951 cagcttcgatcacgaatttaacgacacctttactgtgcgtcagaacctgc 1000
:|.|.||.|||..|||..|.|||||||||||.||.|:.||...||||:|.
node3 951 mATCatccATCgtGAaggtcaCGacaCcTTtgcTttkggTagCAACCkGg 1000

root 1001 gctttgctgaaaacaaaacctcgcaaaacagcgtttatggttacggcgtc 1050
|||...||.||.|.:|.||.|||||.|||.|.|..|..|||.|...|.||
node3 1001 GCTgmccttaacaamAcaCatcGcagaActgtggGtcGggtcAGaAcaTc 1050

root 1051 tgctccgatccggcgaatgcttacagcaaacagtgtgcggcattagcgcc 1100
||..|||.:|...|.|..||.||.|...|||..|||||||.:|.||...|
node3 1051 TgkgCcGgwCTcCcaataGCgtAgaCagAACCCTgTgCgGawTgAgaaAc 1100

root 1101 agcggataaaggccattatctggcacgtaaatacgtcgttgatgatgaga 1150
|..||.|.||.:||..||.|.:|..:||.||.|||.|.|||:.|||..|.
node3 1101 actgGGTTaAcrCCgAtAgCckgtcsGTtAaaAcGcCcTTGmcgATatgc 1150

root 1151 agctgcaaaacttctccgttgatacccagttgcagagcaagtttgccact 1200
|||..|.||..||||.|..|.:.|.||.|.|..:|.||||:|.|.||||.
node3 1151 agcAtctAataTTCttcaatcmCAgCCggCtcGmGggcAaktGtTcCAcg 1200

root 1201 ggcgatatcgaccacaccctgctgaccggtgtcgactttatgcgtatgcg 1250
|.|.|.:||||...|||.|||||..||||||.||:..||||||.|.:..|
node3 1201 GtctaarTcgaaGgCaCtctgctagCcGGTgacgwgGtTaTGcaTgycTg 1250

root 1251 taatgacatcaacgcctggtttggttacgacgactctgtgccactgctca 1300
:|.|..||||.|||.|.||.||||||||||..||.|.|||||:|.|....
node3 1251 kAgtwTCatctAcgGcCGGcTtgGtTacGaaaACccsgTGCCrcagGgag 1300

root 1301 atctgtacaatccggtgaataccgatttcgacttcaatgccaaagatccg 1350
...|..|||||.|.||||:|.||...|...||||||||.|..||||||||
node3 1301 gGtttgacaATgctGTGAmTtcctgsTgtcaCtTCaaTccrcAaGAtCcg 1350

root 1351 gcaaactccggcccttaccgcattctgaataaacagaaacaaacgggcgt 1400
||||||.|..||.|||.||||..|.|.|.|||||||||.||||||||||.
node3 1351 GcAaACaCacGctctTgcCGCgatgtcactaaACAgaacCaaaCgggCgc 1400

root 1401 ttatgttcaggatcaggcgcagtgggataaagtgctggtcaccctaggcg 1450
|||||..||||||.|.|..|||:|:.|....|.::||:||||.|:||..|
node3 1401 TTATGsgCaGGAtaaCggcCAGyGraaAgyggassTgstcACtckagctG 1450

root 1451 gtcgttatgactgggcagatcaagaatctcttaaccgcgttgccgggacg 1500
.||||:|||.....||||||||||.||...||....|||.|||||..||.
node3 1451 tTcGtyAtGtTaTTgcAGATcAaGTattCattccatgcGgTgCCgaaAcm 1500

root 1501 accgataaacgtgatgacaaacagtttacctggcgtggtggtgttaacta 1550
|.||||||...||:||.||||..||.|||..|.:.:|||.||.|||.|.|
node3 1501 aTCGATAacactGmtggCAaAttgtcTActGgwmtkgGTTgTcTtatCCA 1550

root 1551 cctgtttgataatggtgtaacaccttacttcagctatagcgaatcgtttg 1600
.|..|.||||||.:||.|||||.|||.|...|||||||.|:..||.||.|
node3 1551 gCsaTctGatAACsgTaTaaCAtcTTTCCagAGcTATaccrGttcCtTcg 1600

root 1601 aaccttcttcgcaagttgggaaggatggtaatattttcgcaccgtctaaa 1650
||:.||.|:..|||||....|||||.||:||.||.|.|...|||||:||.
node3 1601 AasgTTttwtAcaAGTctytaagGaGgGwAaGatCtgCctccCgTckAag 1650

root 1651 ggtaagcagtatgaagtcggcgtgaaatatgtaccggaagatcgtccgat 1700
|.|..||.||:|||||||.||.||||.:|.||||.||||||||..||.|.
node3 1651 gtTttGCtgTwTgAagtCmgcCtgAAgyAsGtacggGAaGatctgcCcaC 1700

root 1701 tgtagttactggtgccgtgtataatctcactaaaaccaacaacctgatgg 1750
||||..|:|||||||.|||.|.|.|:||.|....|.|||..|||..|.|:
node3 1701 tGtAtaTwCtggtGcagTggAaagtmtCcCccgtawCaAacacCcaaGGk 1750

root 1751 cggaccctgagggttccttcttctcggttgaaggtggcgagatccgcgca 1800
.|||:.||||||||.|||||||.|||.|||.|...|.|..|.||.||||.
node3 1751 tGgAskCTGagggTaCcTtCTTaTcgattGgaccAGaCttgtTcgGCgcc 1800

root 1801 cgtggcgtagaaatcgaagcgaaacggccgctgtcggcgagtgttaacgt 1850
||..|..|||..||.|||||||.||.||||:.|..||:|||||||:|.||
node3 1801 CGaaggttAgtcattGAagcGagaCcgCcgyaggAggmgAGtGtTmagGt 1850

root 1851 agtcggttcttatacttacaccgatgcggaatacaccaccgatactacct 1900
||.||.||..||.|.||..|||||||.|||||||.:.|||.||||||...
node3 1851 agAcGtTTtgtAgatttstaccGatgaggAatAcTmtaCccAtActattA 1900

root 1901 ataaaggcaatacgcctgcacaggtgccaaaacacatggcttcgttgtgg 1950
||||.|.|||||.|||.|.|.||:...|||.||.|..|||..|.|...|.
node3 1901 aTaAcGmCaAtaaGccAGaatagkgTGcaAgaCTctcGgCccCatgtaGc 1950

root 1951 gctgactacaccttctttgacggtccgctttcaggtctgacgctgggcac 2000
.|||||:|.:||.||.:|.||||.||.||.||||||.|.....|...|||
node3 1951 ACTgaCyaawccCtCgytTAcGgCcCcCTstCAgGTrTygtctTAtcCAC 2000

root 2001 cggtggtcgttatactggctccagttatggtgatccggctaactccttta 2050
||.||.||||||.|||..|||||||...|.||||.||.||||.||:||..
node3 2001 cgTTgctcgttaGactccCTccagtgCcgaTgaTacGtCTaAgtcmtTgg 2050

root 2051 aagtgggaagttatacggtcgtggatgcgttagtacgttatgatctggcg 2100
.||.||.|.|..||...|||..|.|||.||.|||:|||||.||||||||.
node3 2051 caGGGGTacgcGAtyatGTCcagaatgggTcaGTwcgTTaggatctgGCt 2100

root 2101 cgagtcggcatggctggctccaacgtggcgctgcatgttaacaacctgtt 2150
|||||:....|||.|||||||.|||||.|....:...|:|...|...|||
node3 2101 cGAgTycagtTggrTgGctCCtAcgTgaCtaGtsTctTyacGtAatmgTT 2150

root 2151 cgatcgtgaatacgtcgccagctgctttaacacttatggctgcttctggg 2200
.||||||||..||||||:|.|.|:.|.||.||.|||||.:|..|||..||
node3 2151 tGAtCGtgACsacgTcGmCCgwTkatAtAccAatTATGamtaattCGagg 2200

root 2201 gcgcagaacgtcaggtcgttgcaaccgcaaccttccgtttctaa 2244
||:|:|||||..|||||.||||||:|||..||||||...||.||
node3 2201 gCrCmgaACgcaaGgtcttTGcaayCgcttcctTCctactcAaa 2244


#---------------------------------------
#---------------------------------------