Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~lu.andreeva/edialign_read.fasta Дата изменения: Thu Apr 23 21:46:57 2009 Дата индексирования: Tue Oct 2 05:18:03 2012 Кодировка:

DIALIGN 2.2.1
*************

Program code written by Burkhard Morgenstern and Said Abdeddaim
e-mail contact: dialign (at) gobics (dot) de

Published research assisted by DIALIGN 2 should cite:

Burkhard Morgenstern (1999).
DIALIGN 2: improvement of the segment-to-segment
approach to multiple sequence alignment.
Bioinformatics 15, 211 - 218.

For more information, please visit the DIALIGN home page at

http://bibiserv.techfak.uni-bielefeld.de/dialign/

************************************************************



program call: edialign


Aligned sequences: length:
================== =======

1) BIOH_CITK8 256
2) BIOH_SALAR 256
3) BIOH_ERWCT 255
4) BIOH_SERMA 255
5) BIOH_YERPS 258
6) BIOH_VIBVY 255
7) BIOH_IDILO 255
8) BIOH_BUCBP 265
9) BIOH_WIGBR 259
10) BIOH_NITEU 252
11) BIOH_PHOLL 261
12) BIOH_SODGM 257

Average seq. length: 257.0


Please note that only upper-case letters are considered to be aligned.


Alignment (DIALIGN format):
===========================

BIOH_CITK8 1 M-NDIWWQTE GQGNCHLVLL HGWGLNAEVW NCIRE-ELSA HFTLHLVDLP
BIOH_SALAR 1 M-NDIWWQTY GEGNCHLVLL HGWGLNAEVW HCIRE-ELGS HFTLHLIDLP
BIOH_ERWCT 1 M-AALYWQTE GAGNTDLVLL HGWGLNAQVW QSMVV-RLAP HFRLHLVDLP
BIOH_SERMA 1 M-TALYWQTI GEGERDLVLL HGWGLNAEVW SCIQ--ALTP HFRLHLVDLP
BIOH_YERPS 1 M-KQLYWYTC GEGDCDLVLL HGWGLNSGVW HCIID-RLAP HFRLHLVDLP
BIOH_VIBVY 1 MSTDLHWQTQ GQG-PDLVLL HGWGMNGAVW QQVVE-RLEP HFRLHVVDLP
BIOH_IDILO 1 msisvtc--C GTG-TPIVVL HGWGMNSNIW QPVVP-ALSE HFQLYCVDLP
BIOH_BUCBP 1 MNKKLHWKSL GTGTTNLILI HGWGVNSKIW SILVQsQLYQ HFKLHFVDLP
BIOH_WIGBR 1 M-KPFFWRII GSGSVNLVFI HGWGLNSCIW NNIII-ILSN YFKLHLVDLP
BIOH_NITEU 1 M-ASIHIETT GNG-PDLVML HGWAMHSGVW DGVVE-SLSQ RFRLHQVDLP
BIOH_PHOLL 1 M-ADLFWQTS DEGSRDLVLL HGWGLNAEVW RSIEM-RCAP HFRLHLVDLP
BIOH_SODGM 1 M-VSLFWQTT GTGDRDLVLL HGWGLNAEVW SYIVP-RLAT HFRLHLVDLP

3033444444 4454578888 8888888888 7665405777 8878888888

BIOH_CITK8 49 GFGRSQGFGA --MSLEQMAK HVLKQAPDKA VWLGWSLGGL VASQVALTHP
BIOH_SALAR 49 GYGRSTGFGA --MTLEEMTA QVAKNAPDQA IWLGWSLGGL VASQMALIHP
BIOH_ERWCT 49 GYGRSQGFGP --MPLNDMAN IVLTQAPERA VWLGWSLGGL VASQIALSAP
BIOH_SERMA 48 GYGRSQGFGA --LSLAQMTE IVLAAAPPQA WWLGWSLGGL VASQAALMQP
BIOH_YERPS 49 GYGRSQDYGA --MSLADMAE RVAQQAPKQA LWLGWSMGGL VASQIALSQP
BIOH_VIBVY 49 GYGHSAHLHA --ASLEEIAQ QLLEHAPKQA IWVGWSLGGL VATHMALHHA
BIOH_IDILO 47 GFGDSVwsse ndVSLESFIE QIMPALPPRF HLLGWSLGGL IATQIALTHS
BIOH_BUCBP 51 GFGHSNQLLP --MTLNDTAE LLSVYIPKNS ILLGWSMGGL IASKIALNYP
BIOH_WIGBR 49 GYGKNIlYKE --YSFSKITE IIACKSPKKS ILIGWSLGGL IATNISIVYP
BIOH_NITEU 48 GHGASRDCAL --DSLDQMTE VIADRLPGRY SVcGWSLGGQ VAIRLALQAP
BIOH_PHOLL 49 GYGRSQKYGP --MNLADMAD EVWRYAPENA LWLGWSLGGL VASRIALDHQ
BIOH_SODGM 49 GYGRSRGYGA --LTLEEMAE EVASRAPHGA LWLGWSLGGL VATTVARRCP

8887743334 0044555544 3333345545 5567777777 7777777666

BIOH_CITK8 97 ERVQALVTVA SSPCFSAREA WP-GIKPDIL AGFQQQLSED FQRTVERFLA
BIOH_SALAR 97 ERVQALVTVA SSPCFSAREG WP-GIKPEVL AGFQQQLSDD FERTVERFLA
BIOH_ERWCT 97 LRVEKLITVA SSPCFSAQDD WP-GIKPDVL QGFQQQLSED FQRTVERFLA
BIOH_SERMA 96 QRVSGLITVA SSPCFAARDE WP-GIRPDVL SGFQHQLSLD FQRTVERFLA
BIOH_YERPS 97 ECVRGLITVS SSPCFTARDE WP-GIKPEVL AGFQHQLSDD FHRTVERFLA
BIOH_VIBVY 97 DYVSKLVTVA SSPKFAAEAR WR-GIQPQVL SAFTEQLSED FHITVERFMA
BIOH_IDILO 97 DRVMSLTTVA SSPHFVESND WA-GIKPDIL EQFQQQLDSN FKKTIERFLA
BIOH_BUCBP 99 QKIKGIISVC SSPCFIVRPN WP-GIPKKIF LKFYNKLNIN FDRTISEFIT
BIOH_WIGBR 97 EKFKGLIIVS SSPCFCEKKD WP-GIKKEIL NNFSFQLKND FHNTVKKFFN
BIOH_NITEU 96 ERVQQLVLVA STPCFVRRAD WPwGMEDSTL TLFMENLARD YTQTLNRFLT
BIOH_PHOLL 97 DKVAGLITVA SSPHFSAESD WP-GIKPEVL HDFEHQLSKD FQRTVERFLA
BIOH_SODGM 97 HAVAGLVTVA SSPRFCADGD WP-GIRPEVL EGFARELRQD FTRTVSRFLG

6677788899 9998877667 8807777777 7777777767 7667766666

BIOH_CITK8 146 LQTLGTETAR QDARTLKSAV LALPMPEVAV LNGGLEILKT ADLREPLKSL
BIOH_SALAR 146 LQTLGTETAR QDARTLKSVV LAQSMPDVEV LNGGLEILKT VDLREPLKSV
BIOH_ERWCT 146 LQTLGTENAR QDARLLKGVV LEQPMPSVDV LNGGLEILRE ADLRQPLADL
BIOH_SERMA 145 LQTLGTESAR QDARQLKAVV LNQPTPSVEV LNGGLEILRT ADLRAPLAEL
BIOH_YERPS 146 LQTLGTESSR QDARLLKSVV LQHQMPDVEV LTGGLEILRT ADLRTALSGF
BIOH_VIBVY 146 LQAMGSPSAR QDVKNLKQAV FSRPQPNPQS LLAGLQMLAE VDLRDHLPHL
BIOH_IDILO 146 IQAMGSEDAR EQVKQVKQLI FTKPMPDQGV LKQSLTILQT ADLRQQLPNI
BIOH_BUCBP 148 LQSHNTNyl- -EIKNLKQQI LSQPYPTIYT LKKNLETIFK TDLRTKIKKL
BIOH_WIGBR 146 IQFLGTKKNN NEIKKLKNIF FRQKEPSYKT LSSGLKILKN IDIRNYLKYI
BIOH_NITEU 146 LQVSGSEDQA RVLAWLRKSI LRGQPPTPAT LQAGLKILQT SDLRAELNQV
BIOH_PHOLL 146 LQTLGTDSAR QDARLLKSVV LAQPMPSVEV LHVGLEILRT EDLRQPLAEL
BIOH_SODGM 146 LQTLGTASAR QDTRWLKSVV LAHPAPAIEV LTGGLALLRT SDVRKALDQL

6666665555 5445555545 5445555445 5446666666 6666666666

BIOH_CITK8 196 TMPFLRLYGY LDGLVPRKVV PMLDAAWPE- -SESQVFAKA AHAPFISHPG
BIOH_SALAR 196 NMPFLRLYGY LDGLVPRKIA PLLDTLWPH- -STSQIIVKA AHAPFISHPA
BIOH_ERWCT 196 TVPLLRLYGA LDGLVPRKVA GRLDDEWPN- -STSVVMPKA AHAPFISHPD
BIOH_SERMA 195 NLPLLRIYGY LDGLVPRKVA ELLDAAWPN- -STSQIVAKA AHAPFISHPD
BIOH_YERPS 196 TLPFMRVYGH LDSLVPRKVA SLLDSAWPQ- -TQSVVMQGA AHAPFISHPN
BIOH_VIBVY 196 TMPMLRLYGR LDGLVPIKVA QDLEKALPA- -SEQFIFTQS SHAPFITEPE
BIOH_IDILO 196 EVPFNRFYGR LDSLVPERAI DDISALAPE- -SKAVVFTKS AHAPFISEPE
BIOH_BUCBP 196 KIPMLRIYGS LDTFVPKKIR EILDILWPK- -TKSITIAHA SHIPFVSHQK
BIOH_WIGBR 196 KIPTLRIYGN LDVIVPVKII PIIKKLqnfn iNKNIIIPSA SHAPFLSHPF
BIOH_NITEU 196 SQPVLLIHGR NDVITPAGAA DWMQQHLPR- -ARLVLFPHC GHAPFLSFPE
BIOH_PHOLL 196 AIPFLRIYGY LDGLVPRKII NILDEKWPR- -SVSAMMRHA AHAPFISHPD
BIOH_SODGM 196 DVPLLRLYGY LDGLVPRKVV PLVDELSTA- -SHSIVFAGA AHAPFISHPV

6666666666 6767776664 4454444440 0444444445 5555555554

BIOH_CITK8 244 EFCQALMALK QKi------- --
BIOH_SALAR 244 AFCQALAALK ssl------- --
BIOH_ERWCT 244 AFTEQVIAFA QA-------- --
BIOH_SERMA 243 EFVTMIEAFI AAh------- --
BIOH_YERPS 244 DFAKLILNFA EEnkk----- --
BIOH_VIBVY 244 SFCHQLLSFA GK-------- --
BIOH_IDILO 244 RFISELLkvv en-------- --
BIOH_BUCBP 244 EFYESIINFK nylntlkitc qk
BIOH_WIGBR 246 LFCKIIKYFI KKfn------ --
BIOH_NITEU 244 QFVSCFDAL- ---------- --
BIOH_PHOLL 244 EFVGLLTEFA SREvlqgr-- --
BIOH_SODGM 244 PFCQALCDFS QLEs------ --

4422221111 0000000000 00




Sequence tree:
==============

Tree constructed using UPGMA based on DIALIGN fragment weight scores

((((((((((BIOH_CITK8 :0.003038BIOH_SALAR :0.003038):0.000986(BIOH_ERWCT :0.003810BIOH_SERMA :0.003810):0.000213):0.000110BIOH_YERPS :0.004134):0.000209BIOH_PHOLL :0.004343):0.000561BIOH_SODGM :0.004903):0.001386BIOH_VIBVY :0.006289):0.001444BIOH_IDILO :0.007733):0.000817BIOH_WIGBR :0.008550):0.000148BIOH_BUCBP :0.008698):0.002420BIOH_NITEU :0.011118);