Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~lupus/addonfiles/p0a6y1.out Дата изменения: Thu Mar 4 22:47:23 2010 Дата индексирования: Tue Oct 2 11:16:11 2012 Кодировка:

TBLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= swissprot|P0A6Y1|IHFB_ECOLI Integration host factor subunit
beta;
(94 letters)

Database: xc
460 sequences; 5,103,728 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE012326 AE008922 Xanthomonas campestris pv. campestris str. ATC... 128 9e-32
AE012195 AE008922 Xanthomonas campestris pv. campestris str. ATC... 65 1e-12
AE012357 AE008922 Xanthomonas campestris pv. campestris str. ATC... 65 2e-12

>AE012326 AE008922 Xanthomonas campestris pv. campestris str. ATCC
33913, section 234 of 460 of the complete genome.
Length = 10551

Score = 128 bits (322), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 73/91 (80%)
Frame = -3

Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
MTKSELIE LA +Q+H+ + V+ AVK +LE M L+ G+RIEIRGFGSFSLHYR PR
Sbjct: 7801 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 7622

Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
GRNPKTG+ V L GK+VPHFKPGKELR+R +
Sbjct: 7621 GRNPKTGESVALPGKHVPHFKPGKELRERVS 7529


>AE012195 AE008922 Xanthomonas campestris pv. campestris str. ATCC
33913, section 103 of 460 of the complete genome.
Length = 10083

Score = 64.7 bits (156), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%)
Frame = +1

Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
M K+ELI+ +A + I AV ++ + L +G+ + + GFG+F + RA RT
Sbjct: 9334 MNKTELIDGVAAA-ADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERT 9510

Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
GRNPKTGD +++ P FK GK L+D N
Sbjct: 9511 GRNPKTGDSIKIAASKNPAFKAGKALKDAVN 9603


>AE012357 AE008922 Xanthomonas campestris pv. campestris str. ATCC
33913, section 265 of 460 of the complete genome.
Length = 10731

Score = 64.7 bits (156), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 56/94 (59%)
Frame = -3

Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
+TK+E+ ERL + + + ++ V + + L QG ++++ GFG+F L + R
Sbjct: 2002 LTKAEMAERL-FDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRP 1826

Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94
GRNPKTG+++ + + V F+PG++L++R Y
Sbjct: 1825 GRNPKTGEEIPISARTVVTFRPGQKLKERVEAYA 1724


Database: xc
Posted date: Mar 4, 2010 10:15 PM
Number of letters in database: 5,103,728
Number of sequences in database: 460

Lambda K H
0.315 0.133 0.376

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 460
Number of Hits to DB: 530,742
Number of extensions: 7117
Number of successful extensions: 38
Number of sequences better than 1.0e-03: 3
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 1,701,242
Length adjustment: 69
Effective length of query: 25
Effective length of database: 1,669,502
Effective search space: 41737550
Effective search space used: 41737550
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 41 (20.4 bits)