Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~mmetelev/Term3/fasta34.txt Дата изменения: Wed Oct 4 14:47:56 2006 Дата индексирования: Tue Oct 2 09:48:31 2012 Кодировка:

# fasta34 tRNK.fasta bs_genome.fasta
FASTA searches a protein or DNA sequence data bank version 3.4t25 Nov 12, 2004
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

U00096, 76 nt
vs bs_genome.fasta library

opt E()
< 20 0 0:
22 0 0: one = represents 1 library sequences
24 0 0:
26 0 0:
28 0 0:
30 0 0:
32 0 0:
34 1 1:*
36 3 1:*==
38 0 2: *
40 0 3: *
42 10 3:==*=======
44 4 4:===*
46 1 4:= *
48 6 4:===*==
50 2 3:==*
52 2 3:==*
54 2 3:==*
56 3 2:=*=
58 0 2: *
60 2 1:*=
62 2 1:*=
64 0 1:*
66 0 1:*
68 0 1:*
70 1 0:=
72 0 0:
74 1 0:=
76 1 0:=
78 0 0:
80 0 0:
82 0 0:
84 0 0:
86 0 0:
88 0 0:
90 0 0:
92 0 0:
94 0 0:
96 0 0:
98 0 0:
100 0 0:
102 0 0:
104 0 0:
106 0 0:
108 0 0:
110 0 0:
112 0 0:
114 0 0:
116 0 0:
118 0 0:
>120 1 0:=
474432 residues in 21 sequences
MLE_cen statistics: Lambda= 0.1636; K=0.006461 (cen=2)
Kolmogorov-Smirnov statistic: 0.0924 (N=15) at 44

FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6
join: 45, opt: 30, open/ext: -12/-4, width: 16
The best scores are: opt bits E(21)
Z99104 Z99104 Bacillus subtilis complete genom (213080) [f] 326 84.2 1.6e-18
Z99105 Z99105 Bacillus subtilis complete genom (202768) [f] 77 25.4 0.78
Z99106 Z99106 Bacillus subtilis complete genom (195912) [f] 75 25.0 1.1
Z99120 Z99120 Bacillus subtilis complete genom (201059) [r] 72 24.3 1.7
Z99118 Z99118 Bacillus subtilis complete genom (200707) [r] 66 22.9 4.5
Z99124 Z99124 Bacillus subtilis complete genom (203901) [f] 66 22.9 4.5
Z99111 Z99111 Bacillus subtilis complete genom (191980) [r] 65 22.6 5.2
Z99112 Z99112 Bacillus subtilis complete genom (204263) [r] 64 22.4 6.1
Z99113 Z99113 Bacillus subtilis complete genom (207829) [r] 62 21.9 8.2
Z99112 Z99112 Bacillus subtilis complete genom (204263) [r] 62 21.9 8.2
Z99107 Z99107 Bacillus subtilis complete genom (202089) [r] 61 21.7 9.5
Z99120 Z99120 Bacillus subtilis complete genom (201059) [f] 61 21.7 9.5
Z99113 Z99113 Bacillus subtilis complete genom (207829) [f] 60 21.4 11
Z99114 Z99114 Bacillus subtilis complete genom (192961) [f] 60 21.4 11
Z99121 Z99121 Bacillus subtilis complete genom (194692) [r] 60 21.4 11
Z99117 Z99117 Bacillus subtilis complete genom (199173) [r] 59 21.2 13
Z99111 Z99111 Bacillus subtilis complete genom (191980) [f] 57 20.7 16
Z99107 Z99107 Bacillus subtilis complete genom (202089) [f] 57 20.7 16
Z99122 Z99122 Bacillus subtilis complete genom (200690) [r] 56 20.5 19
Z99105 Z99105 Bacillus subtilis complete genom (202768) [f] 56 20.5 19
Z99124 Z99124 Bacillus subtilis complete genom (203901) [f] 56 20.5 19
Z99109 Z99109 Bacillus subtilis complete genom (198743) [r] 55 20.3 21
Z99123 Z99123 Bacillus subtilis complete genom (201139) [f] 55 20.3 21
Z99104 Z99104 Bacillus subtilis complete genom (213080) [f] 55 20.3 21
Z99107 Z99107 Bacillus subtilis complete genom (202089) [r] 55 20.3 21
Z99121 Z99121 Bacillus subtilis complete genom (194692) [r] 55 20.3 21
Z99108 Z99108 Bacillus subtilis complete genom (197409) [r] 55 20.3 21
Z99110 Z99110 Bacillus subtilis complete genom (201241) [r] 54 20.0 23
Z99122 Z99122 Bacillus subtilis complete genom (200690) [f] 54 20.0 23
Z99122 Z99122 Bacillus subtilis complete genom (200690) [f] 52 19.5 28


>>Z99104 Z99104 Bacillus subtilis complete genome (secti (213080 nt)
initn: 309 init1: 309 opt: 326 Z-score: 394.1 bits: 84.2 E(): 1.6e-18
banded Smith-Waterman score: 326; 92.105% identity (92.105% similar) in 76 nt overlap (1-76:11550-11625)

10 20 30
U00096 GGGGCTATAGCTCAGCTGGGAGAGCGCCTG
::::: :::::::::::::::::::::::
Z99104 AGTCCACTCAGGCCCACCATCTTATATAACGGGGCCTTAGCTCAGCTGGGAGAGCGCCTG
11520 11530 11540 11550 11560 11570

40 50 60 70
U00096 CTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCA
:::::::::::::::::: ::::::::::::::: :::::::::
Z99104 CTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAACGTGTTCTTTGAA
11580 11590 11600 11610 11620 11630

Z99104 AACTAGATAACAGTAGACATCACATTCAATTAGTAACACAAGATATCACATAGTGATTCT
11640 11650 11660 11670 11680 11690

>>Z99105 Z99105 Bacillus subtilis complete genome (secti (202768 nt)
initn: 50 init1: 50 opt: 77 Z-score: 76.5 bits: 25.4 E(): 0.78
banded Smith-Waterman score: 77; 67.442% identity (67.442% similar) in 43 nt overlap (13-55:17298-17338)

10 20 30 40
U00096 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAG
:::: :::: :: : :::: ::::
Z99105 GAAGTATAAGGAATGGCTGCGGTCTGGAAACAGCCGGGAAAGAGAAATGTTTG--TGCAG
17270 17280 17290 17300 17310 17320

50 60 70
U00096 GAGGTCTGCGGTTCGATCCCGCATAGCTCCACCA
:::::: :: : :
Z99105 GAGGTCCGCAGATATTATCCGTTCGGCCCGTTTTTAGGGGCGCTTGTCAAAAAAGATTTT
17330 17340 17350 17360 17370 17380

>>Z99106 Z99106 Bacillus subtilis complete genome (secti (195912 nt)
initn: 45 init1: 45 opt: 75 Z-score: 73.9 bits: 25.0 E(): 1.1
banded Smith-Waterman score: 75; 61.905% identity (61.905% similar) in 63 nt overlap (4-65:16312-16371)

10 20 30
U00096 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTT
:: :: : ::::: : : :: : ::
Z99106 GGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCATTGCGGGATT
16290 16300 16310 16320 16330 16340

40 50 60 70
U00096 TGCACGCAGGAG-GTCTGCGGTTCGATCCCGCATAGCTCCACCA
: ::: ::: ::::::::: ::: :::
Z99106 ---AAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTC
16350 16360 16370 16380 16390

Z99106 ACCGACGACGGCGGGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCT
16400 16410 16420 16430 16440 16450

>>Z99120 Z99120 Bacillus subtilis complete genome (secti (201059 nt)
rev-comp initn: 71 init1: 71 opt: 72 Z-score: 70.1 bits: 24.3 E(): 1.7
banded Smith-Waterman score: 72; 74.074% identity (74.074% similar) in 27 nt overlap (51-25:17246-17272)

70 60 50 40 30
U0009- TGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTC
: :::::: : : : :::: ::::::
Z99120 GTGAAAGCGGTTCTTACCCATCCCGCTCAGGGAGACCTTCATCATCCAAAACAGGCGGAT
17220 17230 17240 17250 17260 17270

20 10
U0009- TCCCAGCTGAGCTATAGCCCC

Z99120 GTGCCATTTTTTCATGAGAGAAAAGCGCTCGCATATGGTGAACAGACCAATATCCCCCAC
17280 17290 17300 17310 17320 17330

>>Z99118 Z99118 Bacillus subtilis complete genome (secti (200707 nt)
rev-comp initn: 100 init1: 50 opt: 66 Z-score: 62.4 bits: 22.9 E(): 4.5
banded Smith-Waterman score: 66; 59.649% identity (59.649% similar) in 57 nt overlap (58-2:12847-12902)

70 60 50 40 30
U0009- TGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCA
:: :: : : : : ::: :: : :::
Z99118 TGACCGTCACATGATATTCCTGACCCACATTCAAATCACCAATCGTCTG-ATGAATGGCA
12820 12830 12840 12850 12860 12870

20 10
U0009- GGCGCTCTCCCAGCTGAGCTATAGCCCC
::::::: : : ::: :: : : :
Z99118 GGCGCTCCCGCCTCTGCTTTACACCACTCTATAATCAAATCATCAAGGGCTGACTCGACC
12880 12890 12900 12910 12920 12930

>>Z99124 Z99124 Bacillus subtilis complete genome (secti (203901 nt)
initn: 45 init1: 45 opt: 66 Z-score: 62.4 bits: 22.9 E(): 4.5
banded Smith-Waterman score: 66; 75.000% identity (75.000% similar) in 24 nt overlap (52-75:11587-11610)

30 40 50 60 70
U00096 GAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCA
: ::::::::: ::: : ::::
Z99124 CTGATACTGTCTTGATTTCCTTTTATCATAGTTTCGATCCCAGATATCAACACCTTATAT
11560 11570 11580 11590 11600 11610

Z99124 TCACTTTCTAATAAAACAGCAGAAAAATCGCGAACGACGGCTTTCTTATTTTCCAACAAT
11620 11630 11640 11650 11660 11670

>>Z99111 Z99111 Bacillus subtilis complete genome (secti (191980 nt)
rev-comp initn: 50 init1: 50 opt: 65 Z-score: 61.2 bits: 22.6 E(): 5.2
banded Smith-Waterman score: 65; 61.194% identity (61.194% similar) in 67 nt overlap (72-8:10081-10146)

70 60 50
U0009- TGGTGGAGCTATGCGGGATCGAACCGCAGACCTC
: :::::::: :::: :::: : ::
Z99111 CGCTGGAGAGGATTCCATATGGCGAATCCCGAAGCTATGC-GGATATTGCCGCTGCTGTC
10060 10070 10080 10090 10100

40 30 20 10
U0009- CTGCGTGC-AAAGCAG-GCGCTCTCCCAGCTGAGCTATAGCCCC
:: : ::::: : :::: :: : : ::::
Z99111 GGCAGTCCGAAAGCGGTGCGCGCTGTCGGGCAGGCTAATAAACGTAACGACCTGCCGATT
10110 10120 10130 10140 10150 10160

Z99111 TTTGTCCCGTGCCACAGAGTGATCGGCAAAAACAGTGCGTTAACAGGATACGCCGGAAGC
10170 10180 10190 10200 10210 10220

>>Z99112 Z99112 Bacillus subtilis complete genome (secti (204263 nt)
rev-comp initn: 64 init1: 64 opt: 64 Z-score: 59.9 bits: 22.4 E(): 6.1
banded Smith-Waterman score: 64; 80.000% identity (80.000% similar) in 20 nt overlap (72-53:7016-7035)

70 60 50
U0009- TGGTGGAGCTATGCGGGATCGAACCGCAGACCTC
:::::: : ::: ::::::
Z99112 GAAAAAAGAAGAAGTCATTCCATTCATACAGGAGCTTTCCGGTTTCGAACATATCCTTGT
6990 7000 7010 7020 7030 7040

40 30 20 10
U0009- CTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCC

Z99112 TGCCGGGCTGATGACAATGGCTCCGCTGACTGATGATCAAGATCAGATCAGAAGCTGTTT
7050 7060 7070 7080 7090 7100

>>Z99113 Z99113 Bacillus subtilis complete genome (secti (207829 nt)
rev-comp initn: 55 init1: 55 opt: 62 Z-score: 57.3 bits: 21.9 E(): 8.2
banded Smith-Waterman score: 62; 87.500% identity (87.500% similar) in 16 nt overlap (25-10:18094-18109)

50 40 30 20 10
U0009- AACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCC
:: ::::::::::: :
Z99113 GGCTGCACATGGCCGGTAAATCACATGTTTGCGCTCCCAGCTGACCGCCTTGGCCATGCT
18070 18080 18090 18100 18110 18120

Z99113 TGGGCCTATCGTAATCAGCAATGGCATCAGCAGCAATTGATCCCATATCGGTCCTCACTG
18130 18140 18150 18160 18170 18180

>>Z99112 Z99112 Bacillus subtilis complete genome (secti (204263 nt)
rev-comp initn: 50 init1: 50 opt: 62 Z-score: 57.3 bits: 21.9 E(): 8.2
banded Smith-Waterman score: 62; 60.465% identity (60.465% similar) in 43 nt overlap (68-26:20234-20276)

70 60 50 40
U0009- TGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGC
:::::::::: : : : : : : ::
Z99112 GATCATCATCGGCCAAGCAGCAGAATTTGACTATGCGGGAACACAAGCCTGTCTTGCTTT
20210 20220 20230 20240 20250 20260

30 20 10
U0009- GTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCC
: ::: ::::
Z99112 GAAAGAAGAAGGCTATGAAGTCATCCTTGTCAACTCAAACCCTGCAACGATCATGACAGA
20270 20280 20290 20300 20310 20320




76 residues in 1 query sequences
474432 residues in 21 library sequences
Scomplib [34t25]
start: Wed Oct 4 14:44:21 2006 done: Wed Oct 4 14:45:56 2006
Total Scan time: 0.050 Total Display time: 0.000

Function used was FASTA [version 3.4t25 Nov 12, 2004]