Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~nihilenia/term3/BLAST/orf_2.fasta Дата изменения: Thu Oct 11 20:53:31 2007 Дата индексирования: Tue Oct 2 18:30:07 2012 Кодировка:

BLASTP 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= AALF01000002_2 [557 - 1276] AALF01000002.1 Yersinia intermedia
ATCC 29909 748, whole genome shotgun sequence.
(240 letters)

Database: ec
4930 sequences; 1,548,949 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

DCUR_ECOLI P0AD01 Transcriptional regulatory protein dcuR. 286 7e-79
DPIA_ECOLI P0AEF4 Transcriptional regulatory protein dpiA (Desta... 110 1e-25
ZRAR_ECOLI P14375 Transcriptional regulatory protein zraR. 58 7e-10
CPXR_ECOLI P0AE88 Transcriptional regulatory protein cpxR. 54 8e-09
YEHT_ECOLI P0AFT5 Uncharacterized response regulatory protein yehT. 53 2e-08
ATOC_ECOLI Q06065 Acetoacetate metabolism regulatory protein ato... 51 7e-08
HNR_ECOLI P0AEV1 Protein hnr. 48 6e-07
NTRC_ECOLI P0AFB8 Nitrogen regulation protein NR(I). 48 8e-07
BASR_ECOLI P30843 Transcriptional regulatory protein basR/pmrA. 48 8e-07
NARL_ECOLI P0AF28 Nitrate/nitrite response regulator protein narL. 47 1e-06
CUSR_ECOLI P0ACZ8 Transcriptional regulatory protein cusR. 47 1e-06
UVRY_ECOLI P0AED5 Response regulator uvrY. 46 3e-06
QSEB_ECOLI P52076 Transcriptional regulatory protein qseB. 45 4e-06
PCOR_ECOLI Q47456 Transcriptional regulatory protein pcoR. 45 4e-06
TORR_ECOLI P38684 TorCAD operon transcriptional regulatory prote... 43 2e-05
RSTA_ECOLI P52108 Transcriptional regulatory protein rstA. 43 2e-05
OMPR_ECOLI P0AA16 Transcriptional regulatory protein ompR. 43 2e-05
YEDW_ECOLI P76340 Probable transcriptional regulatory protein yedW. 42 4e-05
KDPE_ECOLI P21866 KDP operon transcriptional regulatory protein ... 42 4e-05
BAER_ECOLI P69228 Transcriptional regulatory protein baeR. 42 5e-05
BARA_ECOLI P0AEC5 Signal transduction histidine-protein kinase b... 41 9e-05
YFHA_ECOLI P0AFU4 Uncharacterized protein yfhA (ORF-2). 40 2e-04
ARCA_ECOLI P0A9Q1 Aerobic respiration control protein arcA (Dye ... 39 3e-04

>DCUR_ECOLI P0AD01 Transcriptional regulatory protein dcuR.
Length = 239

Score = 286 bits (733), Expect = 7e-79
Identities = 137/239 (57%), Positives = 183/239 (76%)

Query: 2 MINVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMR 61
MINVLI+DDDAMVAELN+ Y++Q+ GF CCGT S+L++AKE + ++ PIDL+LLD++M+
Sbjct: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60

Query: 62 QDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTY 121
++NGLDLLPVL +DVIVISSA D TIK +L YGVVDYLIKPFQ SRFEEAL+ +
Sbjct: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120

Query: 122 REKQSLLGQREYCAQEDVDSLLRRSNATPTERKKLPKGLTAQTLRTVCEWIQGMQDGEFS 181
R+K+ L + +Y Q ++D L+ S++ + ++LPKGLT QTLRT+C+WI QD EFS
Sbjct: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180

Query: 182 TEQMANAIGISRVSCRKYLIYLSDTEVLSTKVLYGATGRPVYLYKLLPSQQEVLKQYCQ 240
T+++AN + ISRVSCRKYLI+L + +L T + YG TGRPVY Y++ +LKQYCQ
Sbjct: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239


>DPIA_ECOLI P0AEF4 Transcriptional regulatory protein dpiA
(Destabilizer of plasmid inheritance).
Length = 226

Score = 110 bits (274), Expect = 1e-25
Identities = 65/225 (28%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 3 INVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQ 62
+ +LIV+D+ +AE++ Y+ + GF+ +L QA+ +M L+LLD ++
Sbjct: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQAR--MMIERFKPGLILLDNYLPD 62

Query: 63 DNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYR 122
G++LL L + DV+ ++A+D+ T+ +A++ GV DYLIKP + R + L+ +R
Sbjct: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122

Query: 123 EKQSLLGQREYCAQEDVDSLLRRSNATPTERKKLPKGLTAQTLRTVCEWIQ--GMQDGEF 180
+++ +L + +Q+ +D + + A + +LP G+ TL V + + G+Q
Sbjct: 123 QRKHMLESIDSASQKQIDEMF-NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ---H 178

Query: 181 STEQMANAIGISRVSCRKYLIYLSDTEVLSTKVLYGATGRPVYLY 225
+ E +A A+ ISR + R+YL Y + ++ ++++G GRP +Y
Sbjct: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223


>ZRAR_ECOLI P14375 Transcriptional regulatory protein zraR.
Length = 441

Score = 57.8 bits (138), Expect = 7e-10
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 12/120 (10%)

Query: 3 INVLIVDDDAMVAELNKCYLSQVA----GFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDV 58
I++L+VDDD ++ C + Q G+N +S +QA E + EQ DLVL DV
Sbjct: 6 IDILVVDDD-----ISHCTILQALLRGWGYNVA-LANSGRQALEQVR--EQVFDLVLCDV 57

Query: 59 FMRQDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEAL 118
M + +G+ L ++ + V+++++ + V T +AL+ G +DYLIKP F + L
Sbjct: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117


>CPXR_ECOLI P0AE88 Transcriptional regulatory protein cpxR.
Length = 232

Score = 54.3 bits (129), Expect = 8e-09
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 2 MINVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMR 61
M +L+VDDD + L K L ++ GFN V ++ L + IDL+LLDV M
Sbjct: 1 MNKILLVDDDRELTSLLK-ELLEMEGFN----VIVAHDGEQALDLLDDSIDLLLLDVMMP 55

Query: 62 QDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPF 109
+ NG+D L LR+ + T VI++++ L+ G DYL KPF
Sbjct: 56 KKNGIDTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPF 102


>YEHT_ECOLI P0AFT5 Uncharacterized response regulatory protein yehT.
Length = 239

Score = 52.8 bits (125), Expect = 2e-08
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)

Query: 2 MINVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMR 61
MI VLIVDD+ + E + +L + + G S+ + + D++ LD+ M
Sbjct: 1 MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRP--DVLFLDIQMP 58

Query: 62 QDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTY 121
+ +GL+++ +L EH IV +A D IK A + DYL+KP +R E+ L+
Sbjct: 59 RISGLEMVGMLDP--EHRPYIVFLTAFDEYAIK-AFEEHAFDYLLKPIDEARLEKTLARL 115

Query: 122 REKQS 126
R+++S
Sbjct: 116 RQERS 120


>ATOC_ECOLI Q06065 Acetoacetate metabolism regulatory protein atoC
(Ornithine/arginine decarboxylase inhibitor) (Ornithine
decarboxylase antizyme).
Length = 461

Score = 51.2 bits (121), Expect = 7e-08
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 5 VLIVDDDAMVAE-LNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQD 63
+LIVDD+ V L+ + Q +C + HL P D+VL+D+ M +
Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANN----GRTALHLFADIHP-DVVLMDIRMPEM 61

Query: 64 NGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYRE 123
+G+ L +R T VI++++ +V T +AL+ G DY+IKPF + +
Sbjct: 62 DGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121

Query: 124 KQSL 127
QS+
Sbjct: 122 LQSM 125


>HNR_ECOLI P0AEV1 Protein hnr.
Length = 337

Score = 48.1 bits (113), Expect = 6e-07
Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 52 DLVLLDVFMRQDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKP 108
DL++ D+ M + NGL LL +R + T V+VIS+ ++ I KAL+ GV D L+KP
Sbjct: 53 DLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109


>NTRC_ECOLI P0AFB8 Nitrogen regulation protein NR(I).
Length = 469

Score = 47.8 bits (112), Expect = 8e-07
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 12/127 (9%)

Query: 5 VLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHL--MTTEQPIDLVLLDVFMRQ 62
V +VDDD+ + + + L+ AG C ++ + E L + ++ P D++L D+ M
Sbjct: 6 VWVVDDDSSIRWVLERALAG-AGLTC----TTFENGAEVLEALASKTP-DVLLSDIRMPG 59

Query: 63 DNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSR----FEEAL 118
+GL LL +++ VI++++ +D++ A Q G DYL KPF E A+
Sbjct: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119

Query: 119 STYREKQ 125
S Y+E+Q
Sbjct: 120 SHYQEQQ 126


>BASR_ECOLI P30843 Transcriptional regulatory protein basR/pmrA.
Length = 222

Score = 47.8 bits (112), Expect = 8e-07
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 3 INVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQ 62
+ +LIV+DD ++ + +Q G+ C +V++ + A++ L LV+LD+ +
Sbjct: 1 MKILIVEDDTLLLQ-GLILAAQTEGY-ACDSVTTARMAEQSLEAGHY--SLVVLDLGLPD 56

Query: 63 DNGLDLLPVLREFSEHTDVIVISSATDVNTIKKA-LQYGVVDYLIKPFQFSRFEEALSTY 121
++GL L +R+ ++T ++I +A D T K A L G DYL+KPF +
Sbjct: 57 EDGLHFLARIRQ-KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRAL 115

Query: 122 REKQSLLGQRE 132
+ + G+ E
Sbjct: 116 LRRHNNQGESE 126


>NARL_ECOLI P0AF28 Nitrate/nitrite response regulator protein narL.
Length = 216

Score = 47.4 bits (111), Expect = 1e-06
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 5 VLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQDN 64
+L++DD M+ K +S G S+ +Q E L + P DL+LLD+ M N
Sbjct: 9 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIE-LAESLDP-DLILLDLNMPGMN 66

Query: 65 GLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYREK 124
GL+ L LRE S ++V S + + AL+ G YL+K + +AL
Sbjct: 67 GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 126

Query: 125 QSLLGQREYCAQEDVDSLLRRSNATPTER 153
+ +L + A V + R+N TER
Sbjct: 127 EMVLSE----ALTPVLAASLRANRATTER 151


>CUSR_ECOLI P0ACZ8 Transcriptional regulatory protein cusR.
Length = 227

Score = 47.0 bits (110), Expect = 1e-06
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 3 INVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAK---EHLMTTEQPIDLVLLDVF 59
+ +LIV+D+ E YL++ G G V L HL T DL++LD+
Sbjct: 1 MKLLIVEDEKKTGE----YLTK--GLTEAGFVVDLADNGLNGYHLAMTGD-YDLIILDIM 53

Query: 60 MRQDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFS 112
+ NG D++ +LR ++ ++++++ + K L+ G DYL+KPF F+
Sbjct: 54 LPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFA 106


>UVRY_ECOLI P0AED5 Response regulator uvrY.
Length = 218

Score = 45.8 bits (107), Expect = 3e-06
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 9/182 (4%)

Query: 2 MINVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMR 61
MINVL+VDD +V + L + G G S + A + T +D+VL+D+ M
Sbjct: 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNA--VDVVLMDMSMP 58

Query: 62 QDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTY 121
GL+ + + +I+++ T+ K +Q G YL K + +E +S
Sbjct: 59 GIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKG---AAPQEVVSAI 115

Query: 122 REKQSLLGQREYCAQEDVDSLLRRSNATPTERKKLPKGLTAQTLRTVCEWIQGMQDGEFS 181
R S GQR Y A D+ + S P + + L+ + L+ + +G + E S
Sbjct: 116 RSVYS--GQR-YIA-SDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEIS 171

Query: 182 TE 183
+
Sbjct: 172 EQ 173


>QSEB_ECOLI P52076 Transcriptional regulatory protein qseB.
Length = 219

Score = 45.4 bits (106), Expect = 4e-06
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 3 INVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQ 62
+ +L+++DD ++ + K LS++ GF+ +Q KE L + P D V+LD+ +
Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKM-GFSVDWFTQG-RQGKEALYSA--PYDAVILDLTLPG 56

Query: 63 DNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPF 109
+G D+L RE + V+++++ + + L+ G DYL KPF
Sbjct: 57 MDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPF 103


>PCOR_ECOLI Q47456 Transcriptional regulatory protein pcoR.
Length = 226

Score = 45.4 bits (106), Expect = 4e-06
Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 52 DLVLLDVFMRQDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQF 111
DL++LDV + +G ++ LRE V+ +++ +V K L+ G DYLIKPF F
Sbjct: 47 DLIILDVMLPFLDGWQIISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDF 106

Query: 112 SRFEEALST 120
+ + T
Sbjct: 107 TELVARVRT 115


>TORR_ECOLI P38684 TorCAD operon transcriptional regulatory protein
torR.
Length = 230

Score = 42.7 bits (99), Expect = 2e-05
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 4 NVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQD 63
+++IV+D+ + + Y +Q G+ T S A + Q +DL+LLD+ + +
Sbjct: 4 HIVIVEDEPVTQARLQSYFTQ-EGYTVSVTASG---AGLREIMQNQSVDLILLDINLPDE 59

Query: 64 NGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQ 110
NGL L LRE S +I+++ +D L+ G DY+ KP +
Sbjct: 60 NGLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLE 105


>RSTA_ECOLI P52108 Transcriptional regulatory protein rstA.
Length = 239

Score = 42.7 bits (99), Expect = 2e-05
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 2 MINVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMR 61
M ++ V+DDA V L YL++ + TV E + E P DLVLLD+ +
Sbjct: 1 MNTIVFVEDDAEVGSLIAAYLAK---HDMQVTVEPRGDQAEETILRENP-DLVLLDIMLP 56

Query: 62 QDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIK 107
+G+ + LR V++ S +D+N I AL+ G DY++K
Sbjct: 57 GKDGMTICRDLRAKWSGPIVLLTSLDSDMNHI-LALEMGACDYILK 101


>OMPR_ECOLI P0AA16 Transcriptional regulatory protein ompR.
Length = 239

Score = 42.7 bits (99), Expect = 2e-05
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 5 VLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQDN 64
+L+VDDD + L + YL++ GF ++ Q + + T + L++LD+ + ++
Sbjct: 7 ILVVDDDMRLRALLERYLTE-QGFQVRSVANAEQMDR---LLTRESFHLMVLDLMLPGED 62

Query: 65 GLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPF 109
GL + LR S +I++++ + L+ G DY+ KPF
Sbjct: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPF 107


>YEDW_ECOLI P76340 Probable transcriptional regulatory protein yedW.
Length = 223

Score = 42.0 bits (97), Expect = 4e-05
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 3 INVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHL-MTTEQPIDLVLLDVFMR 61
+ +L+++D+ E LS+ AG+ + ++ ++ L + + L++LD+ +
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSE-AGY----VIDAVSDGRDGLYLALKDDYALIILDIMLP 55

Query: 62 QDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFS 112
+G +L LR ++ T VI +++ V+ + L G DYL+KPF FS
Sbjct: 56 GMDGWQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFS 105


>KDPE_ECOLI P21866 KDP operon transcriptional regulatory protein
kdpE.
Length = 225

Score = 42.0 bits (97), Expect = 4e-05
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 17/150 (11%)

Query: 2 MINVLIVDDDAMVAELNKCYLSQ--VAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVF 59
M NVLIV+D+ + + L + F L +A T +P DL++LD+
Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA-----ATRKP-DLIILDLG 54

Query: 60 MRQDNGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALS 119
+ +G++ + LR++S VIV+S+ ++ + AL G DYL KPF + L
Sbjct: 55 LPDGDGIEFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLR 113

Query: 120 TYREKQSLLGQREYCAQEDVDSLLRRSNAT 149
+ R + A D L++ S+ T
Sbjct: 114 --------VALRRHSATTAPDPLVKFSDVT 135


>BAER_ECOLI P69228 Transcriptional regulatory protein baeR.
Length = 240

Score = 41.6 bits (96), Expect = 5e-05
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 5 VLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQDN 64
+LIV+D+ + +L YL A +S Q ++ T P DL+LLD+ + +
Sbjct: 13 ILIVEDEPKLGQLLIDYLR--AASYAPTLISHGDQVLPYVRQT--PPDLILLDLMLPGTD 68

Query: 65 GLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPF 109
GL L +R FS+ V+V + +++ + L+ G DY+ KP+
Sbjct: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRL-LGLEIGADDYICKPY 112


>BARA_ECOLI P0AEC5 Signal transduction histidine-protein kinase barA
(EC 2.7.13.3).
Length = 918

Score = 40.8 bits (94), Expect = 9e-05
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 1 MMINVLIVDDDAMVAELNKCYLSQVAGFN--CCGTVSSLQQAKEHLMTTEQPIDLVLLDV 58
+ + V+ VDD+ +L L + C ++++AK+ P DL+L+D+
Sbjct: 666 LAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQ------MPFDLILMDI 719

Query: 59 FMRQDNGLDLLPVLREF--SEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEE 116
M +G+ ++ + + T VI +++ +K L G+ DYL KP + R
Sbjct: 720 QMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHN 779

Query: 117 ALSTYREKQSLLGQREYCAQEDVDSLLRRSNAT 149
L Y+ + + +V+ ++ NAT
Sbjct: 780 LLLRYKPGSGISSR---VVTPEVNEIVVNPNAT 809


>YFHA_ECOLI P0AFU4 Uncharacterized protein yfhA (ORF-2).
Length = 444

Score = 40.0 bits (92), Expect = 2e-04
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 24/169 (14%)

Query: 4 NVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQD 63
++L+VDDD + +L L+ G++ V++ A+ + + +DLV+ D+ M +
Sbjct: 7 HLLLVDDDPGLLKLLGLRLTS-EGYS---VVTAESGAEGLRVLNREKVDLVISDLRMDEM 62

Query: 64 NGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYRE 123
+G+ L +++ VI++++ + A Q GV +L KP +A+ E
Sbjct: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122

Query: 124 KQS--------------------LLGQREYCAQEDVDSLLRRSNATPTE 152
+ + LL Q AQ DV L+ + T E
Sbjct: 123 QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171


>ARCA_ECOLI P0A9Q1 Aerobic respiration control protein arcA (Dye
resistance protein).
Length = 238

Score = 39.3 bits (90), Expect = 3e-04
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 4 NVLIVDDDAMVAELNKCYLSQVAGFNCCGTVSSLQQAKEHLMTTEQPIDLVLLDVFMRQD 63
++LIV+D+ + K + + G++ + A+ H + +E I+LV++D+ +
Sbjct: 5 HILIVEDELVTRNTLKS-IFEAEGYD---VFEATDGAEMHQILSEYDINLVIMDINLPGK 60

Query: 64 NGLDLLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPF 109
NGL L LRE + + + +V+ I L+ G DY+ KPF
Sbjct: 61 NGLLLARELREQANVALMFLTGRDNEVDKI-LGLEIGADDYITKPF 105


Database: ec
Posted date: Oct 10, 2007 12:10 AM
Number of letters in database: 1,548,949
Number of sequences in database: 4930

Lambda K H
0.320 0.134 0.382

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4930
Number of Hits to DB: 636,016
Number of extensions: 23068
Number of successful extensions: 126
Number of sequences better than 1.0e-03: 23
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 23
Length of query: 240
Length of database: 1,548,949
Length adjustment: 82
Effective length of query: 158
Effective length of database: 1,144,689
Effective search space: 180860862
Effective search space used: 180860862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 86 (37.7 bits)