Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~olya_zol/term6/text/scr01.pml Дата изменения: Sun Mar 11 00:29:34 2012 Дата индексирования: Tue Oct 2 17:31:35 2012 Кодировка:

bg_color white
set label_size, 16
set label_font_id, 10
load 1oko.pdb

select B_str, chain B
hide all
show cartoon, B_str and polymer
origin B_str
center B_str
color aquamarine, B_str

select calcium, B_str and name CA and not polymer
show spheres, calcium
color margent, calcium
label calcium, "%s" %resn
set label_position,(1,1,1)
alter elem ca, vdw=1.0
rebuild

select gal, B_str and resn gal

select ca_neigh, byres (calcium around 3.5) and not (resn gal or resn gla) and not calcium and not solvent
color blue, ca_neigh
label ca_neigh and name ca, "%s %s" %(resn, resi)
set label_position,(1,1,5)

select gal_neigh, byres (gal around 3.5) and not calcium and not (resn gal or resn gla) and not solvent
show sticks, gal_neigh
color blue, gal_neigh
label gal_neigh and name ca, "%s %s" %(resn, resi)
set label_position,(1,1,5)

center gal

hide sticks, gal
show lines, gal
label gal and name C1, "%s" %resn
set label_position,(1,1,5)
color tv_red, gal

set h_bond_cutoff_center, 3.6
set h_bond_cutoff_edge, 3.2

dist hh_gal, gal, gal_neigh, mode =2