Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~pavel_s/term3/pa_result.txt Дата изменения: Sun Oct 1 14:52:27 2006 Дата индексирования: Tue Oct 2 10:59:08 2012 Кодировка:

TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= aroE description
(272 letters)

Database: pa
529 sequences; 6,296,083 total letters

Searching..done

Score E
Sequences producing significant alignments: (bits) Value

embl|AE004442|AE004442 Pseudomonas aeruginosa PAO1, section 3 of... 241 6e-65
embl|AE004462|AE004462 Pseudomonas aeruginosa PAO1, section 23 o... 70 3e-13
embl|AE004486|AE004486 Pseudomonas aeruginosa PAO1, section 47 o... 28 1.1
embl|AE004822|AE004822 Pseudomonas aeruginosa PAO1, section 383 ... 28 1.5
embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 o... 27 3.3
embl|AE004481|AE004481 Pseudomonas aeruginosa PAO1, section 42 o... 27 4.3
embl|AE004943|AE004943 Pseudomonas aeruginosa PAO1, section 504 ... 26 7.3
embl|AE004537|AE004537 Pseudomonas aeruginosa PAO1, section 98 o... 26 7.3
embl|AE004622|AE004622 Pseudomonas aeruginosa PAO1, section 183 ... 25 9.5

>embl|AE004442|AE004442 Pseudomonas aeruginosa PAO1, section 3 of 529
of the complete genome.
Length = 10141

Score = 241 bits (616), Expect = 6e-65
Identities = 136/274 (49%), Positives = 165/274 (60%), Gaps = 3/274 (1%)
Frame = +3

Query: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60
M+ Y VFGNPI HSKSP IH+ FA+Q Y LAP++DF FF G KGANV
Sbjct: 1101 MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQG-KGANV 1277

Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDL-ERLSFXXXX 119
TVPFKEEA+ DEL+ERA AGAVNTL+RL DGRL GDNTDG GLL DL
Sbjct: 1278 TVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRG 1457

Query: 120 XXXXXXXXXXXSRGVLLPLL-SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEG 178
RGVL P L + I NRT +A +LA+ FA G++ E+EG
Sbjct: 1458 KRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEG 1637

Query: 179 HEFDLIINATSSGISGDIPAIPSSLIHPG-IYCYDMFYQKGKTPFLAWCEQRGSKRNADG 237
FDLI+N TS+ ++GD+P + S+I PG CYDM Y K T F W +RG+ R DG
Sbjct: 1638 -PFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDG 1814

Query: 238 LGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELS 271
LGMLV QAA AF LW GV P PV++ L+ +L+
Sbjct: 1815 LGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLA 1916


>embl|AE004462|AE004462 Pseudomonas aeruginosa PAO1, section 23 of 529
of the complete genome.
Length = 9953

Score = 70.5 bits (171), Expect = 3e-13
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 11/264 (4%)
Frame = -2

Query: 6 VFGNPIAHSKSPFIHQQFAQQLNIEHPYGRV-LAPINDFINTLNAFFSA----GGKGANV 60
+ G I S++P +H++ I + Y + L P+ + L +A G G NV
Sbjct: 7741 LIGAGIQASRTPALHEREGDAQGIRYLYRLIDLDPLGKSADDLEFLLAAASDLGFTGLNV 7562

Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120
T P K+ D+L+ A GAVNT++ L DGR +G NTD +G R
Sbjct: 7561 TFPCKQAIIPLLDDLSAEARGIGAVNTVV-LRDGRRIGHNTDCLGFAEGFRRGLADAPRQ 7385

Query: 121 XXXXXXXXXXSRGVLLPLLSLDC-AVTITNRTVSRAEELA-KLFAHTGSIQALSMDELEG 178
V LL+ + + + +RA+ LA L H G+ +AL+ +L G
Sbjct: 7384 RVVQMGAGGAGAAVAHALLAEGVERLVLFDVDPARAQALADNLNQHFGAPRALAGSDLAG 7205

Query: 179 HEFDL--IINATSSGISGDIPA--IPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRN 234
D ++N T G++ +P +P+ L+ ++ ++ Y +T L G R
Sbjct: 7204 ALGDAQGLVNTTPVGMA-KLPGMPVPAELLRADLWVAEVIYFPLETELLRQARALGC-RT 7031

Query: 235 ADGLGMLVAQAAHAFLLWHGVLPD 258
DG M V QA AF L+ GV D
Sbjct: 7030 LDGGTMAVFQAVKAFELFSGVTAD 6959


>embl|AE004486|AE004486 Pseudomonas aeruginosa PAO1, section 47 of 529
of the complete genome.
Length = 12874

Score = 28.5 bits (62), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3

Query: 65 KEEAFARADELTERAALAGAVNTL 88
++EAFARA + ER LAG TL
Sbjct: 9729 RDEAFARARQALERTVLAGMATTL 9800


>embl|AE004822|AE004822 Pseudomonas aeruginosa PAO1, section 383 of
529 of the complete genome.
Length = 10935

Score = 28.1 bits (61), Expect = 1.5
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -3

Query: 151 TVSRAEELAKLFAHTGSI----QALSMDELEGHEFDLII 185
TV ELA+ AH GSI +L+++ + G EF+L I
Sbjct: 1510 TVRAPRELARYIAHKGSITVDGTSLTVNAVNGAEFELTI 1394


>embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 of
529 of the complete genome.
Length = 10832

Score = 26.9 bits (58), Expect = 3.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2

Query: 33 YGRVLAPINDFINTLNAFFSAGGKGANV-TVPFKEEAFARAD 73
YG L P+ND +SAG N+ +P +E AR D
Sbjct: 277 YGEKLKPVNDEAKAWKTVWSAGQGAGNIDDLPGVDELVARLD 152


>embl|AE004481|AE004481 Pseudomonas aeruginosa PAO1, section 42 of 529
of the complete genome.
Length = 11276

Score = 26.6 bits (57), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1

Query: 194 GDIPAIPSSLIHPG 207
GD+P +P +L HPG
Sbjct: 8360 GDVPPVPGTLFHPG 8319


>embl|AE004943|AE004943 Pseudomonas aeruginosa PAO1, section 504 of
529 of the complete genome.
Length = 12834

Score = 25.8 bits (55), Expect = 7.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Frame = -2

Query: 187 ATSSGISGDI-----------PAIPSSLIHPGIYCYDMFYQKGKTPF 222
A S G+ G+I P +PS + PGI Y G TPF
Sbjct: 2006 AASQGLEGEISLRNSPAVLGWPKVPSDWVRPGILLY------GATPF 1884


>embl|AE004537|AE004537 Pseudomonas aeruginosa PAO1, section 98 of 529
of the complete genome.
Length = 13946

Score = 25.8 bits (55), Expect = 7.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2

Query: 143 CAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDL--IINATSSGISG 194
C ++T T SR E G+IQAL ++EG + + I A G++G
Sbjct: 7373 CQSSLTGDTYSREEARTVQTVRMGTIQALRPVKIEGTKTPIGSIAGAGVGGVAG 7534


>embl|AE004622|AE004622 Pseudomonas aeruginosa PAO1, section 183 of
529 of the complete genome.
Length = 10163

Score = 25.4 bits (54), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3

Query: 229 RGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQ 265
R S+ AD +LVA+ AHA H ++ V+P + Q
Sbjct: 8832 RRSQAPADQRRVLVAEFAHAQCHVHPLVEQVDPAVGQ 8942


Database: pa
Posted date: Oct 1, 2006 1:36 PM
Number of letters in database: 6,296,083
Number of sequences in database: 529

Lambda K H
0.320 0.136 0.401

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,853,782
Number of Sequences: 529
Number of extensions: 27457
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 70
length of query: 272
length of database: 2,098,694
effective HSP length: 87
effective length of query: 185
effective length of database: 2,052,671
effective search space: 379744135
effective search space used: 379744135
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)