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Дата изменения: Thu Nov 13 12:52:34 2003
Дата индексирования: Fri Dec 21 21:42:18 2007
Кодировка:
Genebee DotHelix Motifs' Collection Map
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DotHelix: Motifs' Collection Map Results

References:



Contents:


Parameters

Name Value
Motif's power threshold - DotHelix0
Motif's power threshold - noise upper bound4
Motif's length threshold7
Maximum number of motifs to plot1000
Maximum number of motifs to output50
Threshold of motif's homology percentage_0.01
Accurate DothelixON
Motif frequences recalcON
Normalize weight matrixON
Weight matricesBLOSUM62

Sequences

>AL_DROME

MGISEEIKLEELPQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSGGAPSGASGAS GGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAM KIGLTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHL GFQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSF QSLLANMTAVPRGPPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHASQHQQHPTAHPP PPQAPPQMPVGVQPAQLSPQQLVGIALTQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQ APPPPPRAATPPEDRRTSSIAALRLKAREHELKLELLRQNGHGNDVVS

>AL_AG

YRFKIYNIARLANLDQPSRPMGISDEGSRLEDIGPHEARPPQGSPLERSASTGQLMGSSG GDPNSPLSDPHSDDGGDDFAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAM KIGLTEARIQVWFQNRRAKWRKQEKVGPQGHPYNPYLASAGQVPSATVVAPSLPPNPFSH LGFNLRKPFDAASLAAFRYPSLGGSHMLPSAYFNQFHRAPPPPLLPPGVGTFYTPSASFQ TLLANISAAQRAPPAMPSKPPTSGVDYMPPGPPGIPPPPPPGSQVPTSPASPPISPTALP PVVPVPQAALPAPPQPPPGSASPPQADRRSSSIAALRLKAREHELRLEMLRQNGHSDILS


Weight Matrix of BLOSUM62

BLOSUM62 AMINO ACIDS DISTANCE MATRIX
     A  C  D  E  F  G  H  I  K  L  M  N  P  Q  R  S  T  V  W  Y
A    8
C    4 13
D    2  1 10
E    3  0  6  9
F    2  2  1  1 10
G    4  1  3  2  1 10
H    2  1  3  4  3  2 12
I    3  3  1  1  4  0  1  8
K    3  1  3  5  1  2  3  1  9
L    3  3  0  1  4  0  1  6  2  8
M    3  3  1  2  4  1  2  5  3  6  9
N    2  1  5  4  1  4  5  1  4  1  2 10
P    3  1  3  3  0  2  2  1  3  1  2  2 11
Q    3  1  4  6  1  2  4  1  5  2  4  4  3  9
R    3  1  2  4  1  2  4  1  6  2  3  4  2  5  9
S    5  3  4  4  2  4  3  2  4  2  3  5  3  4  3  8
T    4  3  3  3  2  2  2  3  3  3  3  4  3  3  3  5  9
V    4  3  1  2  3  1  1  7  2  5  5  1  2  2  1  2  4  8
W    1  2  0  1  5  2  2  1  1  2  3  0  0  2  1  1  2  1 15
Y    2  2  1  2  7  1  6  3  2  3  3  2  1  3  2  2  2  3  6 11



BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix



BLOSUM62: List of Motifs

  

Motif 1-1, Power 18.7 Homology percent 90.4 Length 94

NSP+SD +SD .D**APKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG >AL_DROME ( 64) NSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG >AL_AG ( 64) NSPLSDPHSDDGGDDFAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG LTEARIQVWFQNRRAKWRKQEKVGPQ.HPYNPYL >AL_DROME ( 124) LTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYL >AL_AG ( 124) LTEARIQVWFQNRRAKWRKQEKVGPQGHPYNPYL

Motif 1-2, Power 10.2 Homology percent 73.8 Length 42

PPP A+ P DRR+SSIAALRLKAREHEL*LE*LRQNGH.+ >AL_DROME ( 363) PPPPRAATPPEDRRTSSIAALRLKAREHELKLELLRQNGHGN >AL_AG ( 316) PPPGSASPPQADRRSSSIAALRLKAREHELRLEMLRQNGHSD

Motif 1-3, Power 8.5 Homology percent 71.0 Length 31

AA+LAAFRYP L..+ M*PS.YFNQF.RAPP >AL_DROME ( 193) AANLAAFRYPHLSAAPMIPSGYFNQFQRAPP >AL_AG ( 191) AASLAAFRYPSLGGSHMLPSAYFNQFHRAPP

Motif 1-4, Power 8.5 Homology percent 80.0 Length 25

TVV. +LPPNPF+HLGF.LRKPFDA >AL_DROME ( 166) TVVGAALPPNPFTHLGFQLRKPFDA >AL_AG ( 167) TVVAPSLPPNPFSHLGFNLRKPFDA

Motif 1-5, Power 7.3 Homology percent 55.9 Length 34

PP *LP G+. .Y+PS+SFQ+LLAN++A. R.PP >AL_DROME ( 222) PPHMLPHGMAGMYSPSSSFQSLLANMTAVPRGPP >AL_AG ( 221) PPPLLPPGVGTFYTPSASFQTLLANISAAQRAPP

Motif 1-6, Power 4.0 Homology percent 24.2 Length 66

.S.+ + .SP + P +P + APP PP .+. P . S + L* * . >AL_DROME ( 331) ASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAATPPEDRRTSSIAALRLKAREH >AL_AG ( 282) GSQVPTSPASPPISPTALPPVVPVPQAALPAPPQPPPGSASPPQADRRSSSIAALRLKAR E +L.L >AL_DROME ( 391) ELKLEL >AL_AG ( 342) EHELRL
TopParametersSequences Matrix of BLOSUM62Collection MapMotifs


Designed by Valeri Kazatchenko. Last updated: April 20, 2001.
Comments and bug-reports send to Vladimir Nikolaev
Created: Wednesday, Oct-22-2003 17:26:04.